CsGy2G003670 (gene) Cucumber (Gy14) v2

NameCsGy2G003670
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionTMV resistance protein N-like isoform X1
LocationChr2 : 2491022 .. 2491751 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCTAATGTATTATTAATTTTAAATCATTGGAATATCTTATTATGAGGGATTGTACGTTGCTTGAAGAAATTCCAAAGGTTCCAGAAGGAGTAGTTTGTATGGATGCTGGAGGGTGCGTATTATTGACCAGATTTCCTGACTACATACCTGATTTCATATCTTGTGAGGGTAATTTGGTGTGTATCATTTCTTTCTCATGACCTCATCTCTCATGTATTTCGTTTATATAAGAATTAAGTTTACTCTTATTTTGCAGGAAGATGAAAAAAGTTTTGGAGAATTCAAACAACTCATATTAATGAATTATGATATTCCAGATTGGTGCAGGTACAAGAGTATGAACAACTCAATAACATTTAATTTTCCAACTGATTGTCTAAGTGGGAAAAGGAAGGCTTTTATTGTTCCTTGTGTCAAATTTCAATCTAATACTGGTCACACGAGGTGTTGGCTTCATTGTACCGTGTTTGTCAACGATATTGAAGTATGGTGTCGAATGTTAATGCCCAGATCTGACATATTGTGTCTAGATTTGAAGTAATATCATCAGGTGAGTATCTATGGATGCCAGTAGTTGATATTAAGTCCTCAAGAGATATTTTGGATAGAGTTACAGTGTTATTTGATGTTCGTGTTCCAAAGAGGCAACTACTTCATGTTTGTGATCCAAAGTGGGAAGATGAAGTAAGTATAAAAATGTATGGTGTTCACGTGATCATGGAGGAATAA

mRNA sequence

CCCTAATGTATTATTAATTTTAAATCATTGGAATATCTTATTATGAGGGATTGTACGTTGCTTGAAGAAATTCCAAAGGTTCCAGAAGGAGTAGTTTGTATGGATGCTGGAGGGTGCGTATTATTGACCAGATTTCCTGACTACATACCTGATTTCATATCTTGTGAGGGTAATTTGGTGTACAAGAGTATGAACAACTCAATAACATTTAATTTTCCAACTGATTGTCTAAGTGGGAAAAGGAAGGCTTTTATTGTTCCTTGTGTCAAATTTCAATCTAATACTGGTCACACGAGGTGTTGGCTTCATTGTACCGTGTTTGTCAACGATATTGAAGTATGGTGTCGAATGTTAATGCCCAGATCTGACATATTATTTGAAGTAATATCATCAGGTGAGTATCTATGGATGCCAGTAGTTGATATTAAGTCCTCAAGAGATATTTTGGATAGAGTTACAGTGTTATTTGATGTTCGTGTTCCAAAGAGGCAACTACTTCATGTTTGTGATCCAAAGTGGGAAGATGAAGTAAGTATAAAAATGTATGGTGTTCACGTGATCATGGAGGAATAA

Coding sequence (CDS)

ATGAGGGATTGTACGTTGCTTGAAGAAATTCCAAAGGTTCCAGAAGGAGTAGTTTGTATGGATGCTGGAGGGTGCGTATTATTGACCAGATTTCCTGACTACATACCTGATTTCATATCTTGTGAGGGTAATTTGGTGTACAAGAGTATGAACAACTCAATAACATTTAATTTTCCAACTGATTGTCTAAGTGGGAAAAGGAAGGCTTTTATTGTTCCTTGTGTCAAATTTCAATCTAATACTGGTCACACGAGGTGTTGGCTTCATTGTACCGTGTTTGTCAACGATATTGAAGTATGGTGTCGAATGTTAATGCCCAGATCTGACATATTATTTGAAGTAATATCATCAGGTGAGTATCTATGGATGCCAGTAGTTGATATTAAGTCCTCAAGAGATATTTTGGATAGAGTTACAGTGTTATTTGATGTTCGTGTTCCAAAGAGGCAACTACTTCATGTTTGTGATCCAAAGTGGGAAGATGAAGTAAGTATAAAAATGTATGGTGTTCACGTGATCATGGAGGAATAA

Protein sequence

MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLVYKSMNNSITFNFPTDCLSGKRKAFIVPCVKFQSNTGHTRCWLHCTVFVNDIEVWCRMLMPRSDILFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDEVSIKMYGVHVIMEE
BLAST of CsGy2G003670 vs. NCBI nr
Match: KGN60865.1 (hypothetical protein Csa_2G020880 [Cucumis sativus])

HSP 1 Score: 219.2 bits (557), Expect = 1.1e-53
Identity = 119/176 (67.61%), Postives = 123/176 (69.89%), Query Frame = 0

Query: 1   MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLVYKSMNNSITFNFPT 60
           MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNL      +  +F    
Sbjct: 1   MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNL-----EDEKSF---- 60

Query: 61  DCLSGKRKAFIVPCVKFQSNTGHTRCWLHCTVFVNDIEVWCRMLMPRSDILFEVISSGEY 120
               G+ K  I                    +   DI  WCR         FEVISSGEY
Sbjct: 61  ----GEFKQLI--------------------LMNYDIPDWCR---------FEVISSGEY 120

Query: 121 LWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDEVSIKMYGVHVIMEE 177
           LWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDEVSIKMYGVHVIMEE
Sbjct: 121 LWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDEVSIKMYGVHVIMEE 134

BLAST of CsGy2G003670 vs. NCBI nr
Match: XP_011650100.1 (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 3.1e-35
Identity = 98/201 (48.76%), Postives = 117/201 (58.21%), Query Frame = 0

Query: 6   LLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGN---------LVYKSMNNSITF 65
           LLEEIPK+PEGVV M+ GGC+   RFPD I DFISC+ N         L+YKSMNNS+TF
Sbjct: 514 LLEEIPKLPEGVVRMNVGGCISFVRFPDNIVDFISCDDNVVCILMTSSLMYKSMNNSLTF 573

Query: 66  NF-PTDCLSGKRKAFIVPCVKFQSNT-GHTRCWLHCTVFVNDIEVWCRMLMPRSD--ILF 125
            F   D LS K+K FI PCVKFQ  T  H R  + C VF+NDIEVW  M     D  ++ 
Sbjct: 574 LFLVIDYLSWKKKTFIAPCVKFQVTTIDHERVQIECRVFINDIEVWGGMSSSIFDLRLIS 633

Query: 126 EVISSGEYLWMPVV------------DI-----KSSRDILDRVTVLFDVRVPKRQLLHVC 177
             IS GEYLWM V+            DI      SS  +LD++ VLF++           
Sbjct: 634 GKISRGEYLWMTVLHPCRHRLNSCGDDIMDSSPNSSIGMLDKIRVLFEINY--------- 693

BLAST of CsGy2G003670 vs. NCBI nr
Match: XP_016901487.1 (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 149.8 bits (377), Expect = 8.5e-33
Identity = 102/220 (46.36%), Postives = 114/220 (51.82%), Query Frame = 0

Query: 3   DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCE-------------GNLV--- 62
           DC LLEEIPK+PEG V M+A GCV L RFPD IPDFISC+              NLV   
Sbjct: 776 DCKLLEEIPKIPEGAVTMNASGCVSLARFPDNIPDFISCKFYEEVEYTKHGVFKNLVLMN 835

Query: 63  --------YKSMNNSITFNFPT-DCLSGKRKAFIVPCVKFQSNTGHTRCWLHCTVFVNDI 122
                   YKS NNSITF FP  D LS KRKAFI PCVK Q         L   VF+ND 
Sbjct: 836 CDIPDWCKYKSTNNSITFLFPVIDYLSWKRKAFIAPCVKIQVTAYPFH--LAYRVFINDF 895

Query: 123 EVWCRMLMPRSDILFEVISSGEYLWMPVVD------------------IKSSRDILDRVT 177
           EV       R     +  S GEYLWM V+D                  I SSR ILD++T
Sbjct: 896 EV-------RKSFWMDDRSRGEYLWMQVLDPCVHFNPYGDDLNQPRFRINSSRGILDKIT 955

BLAST of CsGy2G003670 vs. NCBI nr
Match: XP_011649005.1 (PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis sativus] >KGN61274.1 hypothetical protein Csa_2G075330 [Cucumis sativus])

HSP 1 Score: 147.5 bits (371), Expect = 4.2e-32
Identity = 93/209 (44.50%), Postives = 113/209 (54.07%), Query Frame = 0

Query: 3    DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNL----------------- 62
            +C LLEEIPKVP+GVV M+A GC+ LTRFPD IPDFI C+ N+                 
Sbjct: 858  ECKLLEEIPKVPKGVVYMNAIGCISLTRFPDNIPDFICCDDNVEYDKKDQVIKQLILMNC 917

Query: 63   ------VYKSMNNSITFNFP-TDCLSGKRKAFIVPCVKFQSNTGHTRCWLHCTVFVNDIE 122
                   YKSMNNS+TF FP  D LS KRKAFI PCVKFQ +         C VF+NDIE
Sbjct: 918  DIPDWFSYKSMNNSVTFLFPLIDYLSWKRKAFITPCVKFQVSIDQP-VEFKCRVFINDIE 977

Query: 123  V-----WCRMLMPRSDILFEVISSGEYLWMPVVDI-------KSSRDILDRVTVLFDVRV 176
            V      C +      + +  +S GEYLWM V  +        SS   LD++TVLF V  
Sbjct: 978  VKYDRRKCSIFSLELLLKYRKVSRGEYLWMAVYPMHVMDSSPNSSIGSLDKITVLFKVN- 1037

BLAST of CsGy2G003670 vs. NCBI nr
Match: KGN61139.1 (hypothetical protein Csa_2G059700 [Cucumis sativus])

HSP 1 Score: 141.4 bits (355), Expect = 3.0e-30
Identity = 91/203 (44.83%), Postives = 113/203 (55.67%), Query Frame = 0

Query: 7    LEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNL--------------------- 66
            LEEI KVP+GVV MD  GCV L RFP+ IPDFISC+ N+                     
Sbjct: 825  LEEILKVPKGVVRMDTRGCVSLARFPNNIPDFISCDDNVEYDKKDGVIKQLILMNCDIPD 884

Query: 67   --VYKSMNNSITFNFPTDCLSGKRKAFIVPCVKFQSNTGHTRCWLHCTV-FVNDIEVWCR 126
               YKSMN+S+TF+F  D LS KRKAFI  CVKF     H    L+C V F+NDIEVW R
Sbjct: 885  WCKYKSMNDSVTFDFLADYLSWKRKAFIALCVKFHVTNDHELVKLNCRVLFINDIEVWSR 944

Query: 127  MLMPRSDILFEVISSGEYLWMPVVDIKSSR-------DILDRVTVLFDVRV--PKRQLLH 177
            M +   +     +S GE LWM V+     R       DI+D ++  F + +   K  LL 
Sbjct: 945  MSISNFNFW---LSRGECLWMAVLHPCMHRLINPYGDDIMD-ISPNFSIGILDDKITLLF 1004

BLAST of CsGy2G003670 vs. TrEMBL
Match: tr|A0A0A0LFN6|A0A0A0LFN6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020880 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 7.6e-54
Identity = 119/176 (67.61%), Postives = 123/176 (69.89%), Query Frame = 0

Query: 1   MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLVYKSMNNSITFNFPT 60
           MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNL      +  +F    
Sbjct: 1   MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNL-----EDEKSF---- 60

Query: 61  DCLSGKRKAFIVPCVKFQSNTGHTRCWLHCTVFVNDIEVWCRMLMPRSDILFEVISSGEY 120
               G+ K  I                    +   DI  WCR         FEVISSGEY
Sbjct: 61  ----GEFKQLI--------------------LMNYDIPDWCR---------FEVISSGEY 120

Query: 121 LWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDEVSIKMYGVHVIMEE 177
           LWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDEVSIKMYGVHVIMEE
Sbjct: 121 LWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDEVSIKMYGVHVIMEE 134

BLAST of CsGy2G003670 vs. TrEMBL
Match: tr|A0A1S4DZR7|A0A1S4DZR7_CUCME (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103499509 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.6e-33
Identity = 102/220 (46.36%), Postives = 114/220 (51.82%), Query Frame = 0

Query: 3   DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCE-------------GNLV--- 62
           DC LLEEIPK+PEG V M+A GCV L RFPD IPDFISC+              NLV   
Sbjct: 776 DCKLLEEIPKIPEGAVTMNASGCVSLARFPDNIPDFISCKFYEEVEYTKHGVFKNLVLMN 835

Query: 63  --------YKSMNNSITFNFPT-DCLSGKRKAFIVPCVKFQSNTGHTRCWLHCTVFVNDI 122
                   YKS NNSITF FP  D LS KRKAFI PCVK Q         L   VF+ND 
Sbjct: 836 CDIPDWCKYKSTNNSITFLFPVIDYLSWKRKAFIAPCVKIQVTAYPFH--LAYRVFINDF 895

Query: 123 EVWCRMLMPRSDILFEVISSGEYLWMPVVD------------------IKSSRDILDRVT 177
           EV       R     +  S GEYLWM V+D                  I SSR ILD++T
Sbjct: 896 EV-------RKSFWMDDRSRGEYLWMQVLDPCVHFNPYGDDLNQPRFRINSSRGILDKIT 955

BLAST of CsGy2G003670 vs. TrEMBL
Match: tr|A0A0A0LJK8|A0A0A0LJK8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G075330 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.8e-32
Identity = 93/209 (44.50%), Postives = 113/209 (54.07%), Query Frame = 0

Query: 3    DCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNL----------------- 62
            +C LLEEIPKVP+GVV M+A GC+ LTRFPD IPDFI C+ N+                 
Sbjct: 858  ECKLLEEIPKVPKGVVYMNAIGCISLTRFPDNIPDFICCDDNVEYDKKDQVIKQLILMNC 917

Query: 63   ------VYKSMNNSITFNFP-TDCLSGKRKAFIVPCVKFQSNTGHTRCWLHCTVFVNDIE 122
                   YKSMNNS+TF FP  D LS KRKAFI PCVKFQ +         C VF+NDIE
Sbjct: 918  DIPDWFSYKSMNNSVTFLFPLIDYLSWKRKAFITPCVKFQVSIDQP-VEFKCRVFINDIE 977

Query: 123  V-----WCRMLMPRSDILFEVISSGEYLWMPVVDI-------KSSRDILDRVTVLFDVRV 176
            V      C +      + +  +S GEYLWM V  +        SS   LD++TVLF V  
Sbjct: 978  VKYDRRKCSIFSLELLLKYRKVSRGEYLWMAVYPMHVMDSSPNSSIGSLDKITVLFKVN- 1037

BLAST of CsGy2G003670 vs. TrEMBL
Match: tr|A0A0A0LJ96|A0A0A0LJ96_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G059700 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 2.0e-30
Identity = 91/203 (44.83%), Postives = 113/203 (55.67%), Query Frame = 0

Query: 7    LEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNL--------------------- 66
            LEEI KVP+GVV MD  GCV L RFP+ IPDFISC+ N+                     
Sbjct: 825  LEEILKVPKGVVRMDTRGCVSLARFPNNIPDFISCDDNVEYDKKDGVIKQLILMNCDIPD 884

Query: 67   --VYKSMNNSITFNFPTDCLSGKRKAFIVPCVKFQSNTGHTRCWLHCTV-FVNDIEVWCR 126
               YKSMN+S+TF+F  D LS KRKAFI  CVKF     H    L+C V F+NDIEVW R
Sbjct: 885  WCKYKSMNDSVTFDFLADYLSWKRKAFIALCVKFHVTNDHELVKLNCRVLFINDIEVWSR 944

Query: 127  MLMPRSDILFEVISSGEYLWMPVVDIKSSR-------DILDRVTVLFDVRV--PKRQLLH 177
            M +   +     +S GE LWM V+     R       DI+D ++  F + +   K  LL 
Sbjct: 945  MSISNFNFW---LSRGECLWMAVLHPCMHRLINPYGDDIMD-ISPNFSIGILDDKITLLF 1004

BLAST of CsGy2G003670 vs. TrEMBL
Match: tr|A0A1S4E019|A0A1S4E019_CUCME (LOW QUALITY PROTEIN: TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103495230 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.2e-28
Identity = 89/210 (42.38%), Postives = 107/210 (50.95%), Query Frame = 0

Query: 2    RDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLV--------------- 61
            RDC LLEEIPKVP+G V M+A GC+LL RFPD I DFISC  N +               
Sbjct: 856  RDCKLLEEIPKVPKGAVTMNASGCILLARFPDNILDFISCYDNYMEEKHEYKVIKELILM 915

Query: 62   ---------YKSMNNSITFNFPTDCLSGKRKAFIVPCVKFQSNTGHTRCWLHCTVFVNDI 121
                     YKS NNSITF FP D  + +RKAFI  CVKFQ      +  +   VF+ND 
Sbjct: 916  NCDIPDWCQYKSTNNSITFLFPADYPTWERKAFIAFCVKFQVIDEEFK--VDSRVFINDF 975

Query: 122  EVWCRMLMPRSDILFEVISSGEYLWMPVVDIKSSRD-----------ILDRVTVLFDVRV 177
            EV+       ++I+      GEYLW+ V+D     D           I DRVTVLF+V  
Sbjct: 976  EVYNGHFW-TNEIVGRKRPRGEYLWIEVIDPDILLDPYDDCEQNQPIIFDRVTVLFEVIT 1035

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN60865.11.1e-5367.61hypothetical protein Csa_2G020880 [Cucumis sativus][more]
XP_011650100.13.1e-3548.76PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis sativus][more]
XP_016901487.18.5e-3346.36PREDICTED: TMV resistance protein N-like [Cucumis melo][more]
XP_011649005.14.2e-3244.50PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis sativus] >KGN61274.... [more]
KGN61139.13.0e-3044.83hypothetical protein Csa_2G059700 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LFN6|A0A0A0LFN6_CUCSA7.6e-5467.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020880 PE=4 SV=1[more]
tr|A0A1S4DZR7|A0A1S4DZR7_CUCME5.6e-3346.36TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103499509 PE=4 SV=1[more]
tr|A0A0A0LJK8|A0A0A0LJK8_CUCSA2.8e-3244.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G075330 PE=4 SV=1[more]
tr|A0A0A0LJ96|A0A0A0LJ96_CUCSA2.0e-3044.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G059700 PE=4 SV=1[more]
tr|A0A1S4E019|A0A1S4E019_CUCME3.2e-2842.38LOW QUALITY PROTEIN: TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LO... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G003670.1CsGy2G003670.1mRNA


Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 173..176

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G003670Cla97C02G041940Watermelon (97103) v2cgybwmbB114
The following gene(s) are paralogous to this gene:

None