CsGy2G003670.1 (mRNA) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.CCCTAATGTATTATTAATTTTAAATCATTGGAATATCTTATTATGAGGGATTGTACGTTGCTTGAAGAAATTCCAAAGGTTCCAGAAGGAGTAGTTTGTATGGATGCTGGAGGGTGCGTATTATTGACCAGATTTCCTGACTACATACCTGATTTCATATCTTGTGAGGGTAATTTGGTGTGTATCATTTCTTTCTCATGACCTCATCTCTCATGTATTTCGTTTATATAAGAATTAAGTTTACTCTTATTTTGCAGGAAGATGAAAAAAGTTTTGGAGAATTCAAACAACTCATATTAATGAATTATGATATTCCAGATTGGTGCAGGTACAAGAGTATGAACAACTCAATAACATTTAATTTTCCAACTGATTGTCTAAGTGGGAAAAGGAAGGCTTTTATTGTTCCTTGTGTCAAATTTCAATCTAATACTGGTCACACGAGGTGTTGGCTTCATTGTACCGTGTTTGTCAACGATATTGAAGTATGGTGTCGAATGTTAATGCCCAGATCTGACATATTGTGTCTAGATTTGAAGTAATATCATCAGGTGAGTATCTATGGATGCCAGTAGTTGATATTAAGTCCTCAAGAGATATTTTGGATAGAGTTACAGTGTTATTTGATGTTCGTGTTCCAAAGAGGCAACTACTTCATGTTTGTGATCCAAAGTGGGAAGATGAAGTAAGTATAAAAATGTATGGTGTTCACGTGATCATGGAGGAATAA CCCTAATGTATTATTAATTTTAAATCATTGGAATATCTTATTATGAGGGATTGTACGTTGCTTGAAGAAATTCCAAAGGTTCCAGAAGGAGTAGTTTGTATGGATGCTGGAGGGTGCGTATTATTGACCAGATTTCCTGACTACATACCTGATTTCATATCTTGTGAGGGTAATTTGGTGTACAAGAGTATGAACAACTCAATAACATTTAATTTTCCAACTGATTGTCTAAGTGGGAAAAGGAAGGCTTTTATTGTTCCTTGTGTCAAATTTCAATCTAATACTGGTCACACGAGGTGTTGGCTTCATTGTACCGTGTTTGTCAACGATATTGAAGTATGGTGTCGAATGTTAATGCCCAGATCTGACATATTATTTGAAGTAATATCATCAGGTGAGTATCTATGGATGCCAGTAGTTGATATTAAGTCCTCAAGAGATATTTTGGATAGAGTTACAGTGTTATTTGATGTTCGTGTTCCAAAGAGGCAACTACTTCATGTTTGTGATCCAAAGTGGGAAGATGAAGTAAGTATAAAAATGTATGGTGTTCACGTGATCATGGAGGAATAA ATGAGGGATTGTACGTTGCTTGAAGAAATTCCAAAGGTTCCAGAAGGAGTAGTTTGTATGGATGCTGGAGGGTGCGTATTATTGACCAGATTTCCTGACTACATACCTGATTTCATATCTTGTGAGGGTAATTTGGTGTACAAGAGTATGAACAACTCAATAACATTTAATTTTCCAACTGATTGTCTAAGTGGGAAAAGGAAGGCTTTTATTGTTCCTTGTGTCAAATTTCAATCTAATACTGGTCACACGAGGTGTTGGCTTCATTGTACCGTGTTTGTCAACGATATTGAAGTATGGTGTCGAATGTTAATGCCCAGATCTGACATATTATTTGAAGTAATATCATCAGGTGAGTATCTATGGATGCCAGTAGTTGATATTAAGTCCTCAAGAGATATTTTGGATAGAGTTACAGTGTTATTTGATGTTCGTGTTCCAAAGAGGCAACTACTTCATGTTTGTGATCCAAAGTGGGAAGATGAAGTAAGTATAAAAATGTATGGTGTTCACGTGATCATGGAGGAATAA MRDCTLLEEIPKVPEGVVCMDAGGCVLLTRFPDYIPDFISCEGNLVYKSMNNSITFNFPTDCLSGKRKAFIVPCVKFQSNTGHTRCWLHCTVFVNDIEVWCRMLMPRSDILFEVISSGEYLWMPVVDIKSSRDILDRVTVLFDVRVPKRQLLHVCDPKWEDEVSIKMYGVHVIMEE
BLAST of CsGy2G003670.1 vs. NCBI nr
Match: KGN60865.1 (hypothetical protein Csa_2G020880 [Cucumis sativus]) HSP 1 Score: 219.2 bits (557), Expect = 1.1e-53 Identity = 119/176 (67.61%), Postives = 123/176 (69.89%), Query Frame = 0
BLAST of CsGy2G003670.1 vs. NCBI nr
Match: XP_011650100.1 (PREDICTED: LOW QUALITY PROTEIN: TMV resistance protein N-like [Cucumis sativus]) HSP 1 Score: 157.9 bits (398), Expect = 3.1e-35 Identity = 98/201 (48.76%), Postives = 117/201 (58.21%), Query Frame = 0
BLAST of CsGy2G003670.1 vs. NCBI nr
Match: XP_016901487.1 (PREDICTED: TMV resistance protein N-like [Cucumis melo]) HSP 1 Score: 149.8 bits (377), Expect = 8.5e-33 Identity = 102/220 (46.36%), Postives = 114/220 (51.82%), Query Frame = 0
BLAST of CsGy2G003670.1 vs. NCBI nr
Match: XP_011649005.1 (PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis sativus] >KGN61274.1 hypothetical protein Csa_2G075330 [Cucumis sativus]) HSP 1 Score: 147.5 bits (371), Expect = 4.2e-32 Identity = 93/209 (44.50%), Postives = 113/209 (54.07%), Query Frame = 0
BLAST of CsGy2G003670.1 vs. NCBI nr
Match: KGN61139.1 (hypothetical protein Csa_2G059700 [Cucumis sativus]) HSP 1 Score: 141.4 bits (355), Expect = 3.0e-30 Identity = 91/203 (44.83%), Postives = 113/203 (55.67%), Query Frame = 0
BLAST of CsGy2G003670.1 vs. TrEMBL
Match: tr|A0A0A0LFN6|A0A0A0LFN6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G020880 PE=4 SV=1) HSP 1 Score: 219.2 bits (557), Expect = 7.6e-54 Identity = 119/176 (67.61%), Postives = 123/176 (69.89%), Query Frame = 0
BLAST of CsGy2G003670.1 vs. TrEMBL
Match: tr|A0A1S4DZR7|A0A1S4DZR7_CUCME (TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103499509 PE=4 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 5.6e-33 Identity = 102/220 (46.36%), Postives = 114/220 (51.82%), Query Frame = 0
BLAST of CsGy2G003670.1 vs. TrEMBL
Match: tr|A0A0A0LJK8|A0A0A0LJK8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G075330 PE=4 SV=1) HSP 1 Score: 147.5 bits (371), Expect = 2.8e-32 Identity = 93/209 (44.50%), Postives = 113/209 (54.07%), Query Frame = 0
BLAST of CsGy2G003670.1 vs. TrEMBL
Match: tr|A0A0A0LJ96|A0A0A0LJ96_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G059700 PE=4 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 2.0e-30 Identity = 91/203 (44.83%), Postives = 113/203 (55.67%), Query Frame = 0
BLAST of CsGy2G003670.1 vs. TrEMBL
Match: tr|A0A1S4E019|A0A1S4E019_CUCME (LOW QUALITY PROTEIN: TMV resistance protein N-like OS=Cucumis melo OX=3656 GN=LOC103495230 PE=4 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 3.2e-28 Identity = 89/210 (42.38%), Postives = 107/210 (50.95%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
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