CsGy1G032010 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G032010
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 31126780 .. 31127270 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCTCACAAAATCGTACAAGCTTGCATCTCATACTAAAATACACTTAACCCCACAGCTGTTCGTCAAAACTCACGACGGAACCCAACTTCTGGGGCCTGAACTAACCACCGAGAATGCATGTTCTCGCCCTTCAAACATCACAATCTCTTCGAAAACACTCATGCGCACTCTAGCTTTCATGTGCACTTCGTCTTGTTGTGTTGAACGATGTATCGTCCTCCTCGATAACATTGTGGCCATTCTCATGGCCCTTTCCTCGACCAGTGTCAACGTGCTTGCTTATGCACGTCAAGGTCCTTGCCCTCTTCATGTCAACATGCTTTATCATGCGTGTCGACGTGTTTTTCTATGTGTATCGACGTGCTTTCTTCTTCTCTGCCCTTAGTGGGGTCACAATCTATATCTCTCATGTATGATTGTAACACTATGGTAGGAGTTATGGTGGTGTCAACCACTCCCGAGTGCATAATCCTTAAGTTCCTTTGA

mRNA sequence

ATGATTCTCACAAAATCGTACAAGCTTGCATCTCATACTAAAATACACTTAACCCCACAGCTGTTCGTCAAAACTCACGACGGAACCCAACTTCTGGGGCCTGAACTAACCACCGAGAATGCATGTTCTCGCCCTTCAAACATCACAATCTCTTCGAAAACACTCATGCGCACTCTAGCTTTCATGTGCACTTCGTCTTGTTGTGTTGAACGATGTATCGTCCTCCTCGATAACATTGTGGCCATTCTCATGGCCCTTTCCTCGACCAGTGTCAACGTGCTTGCTTATGCACGTCAAGGTCCTTGCCCTCTTCATGTCAACATGCTTTATCATGCGTGTCGACTGGGGTCACAATCTATATCTCTCATGTATGATTGTAACACTATGGTAGGAGTTATGGTGGTGTCAACCACTCCCGAGTGCATAATCCTTAAGTTCCTTTGA

Coding sequence (CDS)

ATGATTCTCACAAAATCGTACAAGCTTGCATCTCATACTAAAATACACTTAACCCCACAGCTGTTCGTCAAAACTCACGACGGAACCCAACTTCTGGGGCCTGAACTAACCACCGAGAATGCATGTTCTCGCCCTTCAAACATCACAATCTCTTCGAAAACACTCATGCGCACTCTAGCTTTCATGTGCACTTCGTCTTGTTGTGTTGAACGATGTATCGTCCTCCTCGATAACATTGTGGCCATTCTCATGGCCCTTTCCTCGACCAGTGTCAACGTGCTTGCTTATGCACGTCAAGGTCCTTGCCCTCTTCATGTCAACATGCTTTATCATGCGTGTCGACTGGGGTCACAATCTATATCTCTCATGTATGATTGTAACACTATGGTAGGAGTTATGGTGGTGTCAACCACTCCCGAGTGCATAATCCTTAAGTTCCTTTGA

Protein sequence

MILTKSYKLASHTKIHLTPQLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCTSSCCVERCIVLLDNIVAILMALSSTSVNVLAYARQGPCPLHVNMLYHACRLGSQSISLMYDCNTMVGVMVVSTTPECIILKFL

Homology

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BLAST of CsGy1G032010 vs. NCBI nr
Match: KGN66761.1 (hypothetical protein Csa_1G680080 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 5.4e-49
Identity = 111/128 (86.72%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 20  QLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCTSSCCVERCIVLLDNI 79
           +LFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCTSSCCVERCIVLLDNI
Sbjct: 16  KLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCTSSCCVERCIVLLDNI 75

Query: 80  VAILMALSSTSVNVLAYARQGPCPLHVNMLYHACRLGSQSISLMYDCNTMVGVMVVSTTP 139
           VAILMALSSTSVNVLAYARQ               +GSQSISLMYDCNTMVGVMVVSTTP
Sbjct: 76  VAILMALSSTSVNVLAYARQ---------------VGSQSISLMYDCNTMVGVMVVSTTP 128

Query: 140 ECIILKFL 148
           ECIILKFL
Sbjct: 136 ECIILKFL 128

[Close]

BLAST of CsGy1G032010 vs. TrEMBL
Match: tr|A0A0A0M3F1|A0A0A0M3F1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G680080 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.6e-49
Identity = 111/128 (86.72%), Postives = 113/128 (88.28%), Query Frame = 0


Query: 20  QLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCTSSCCVERCIVLLDNI 79
           +LFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCTSSCCVERCIVLLDNI
Sbjct: 16  KLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCTSSCCVERCIVLLDNI 75

Query: 80  VAILMALSSTSVNVLAYARQGPCPLHVNMLYHACRLGSQSISLMYDCNTMVGVMVVSTTP 139
           VAILMALSSTSVNVLAYARQ               +GSQSISLMYDCNTMVGVMVVSTTP
Sbjct: 76  VAILMALSSTSVNVLAYARQ---------------VGSQSISLMYDCNTMVGVMVVSTTP 128

Query: 140 ECIILKFL 148
           ECIILKFL
Sbjct: 136 ECIILKFL 128

The following BLAST results are available for this feature:

BLAST of CsGy1G032010 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66761.1	5.4e-49	86.72	hypothetical protein Csa_1G680080 [Cucumis sativus]	[more]

BLAST of CsGy1G032010 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G032010 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G032010 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M3F1\|A0A0A0M3F1_CUCSA	3.6e-49	86.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G680080 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G032010.1	CsGy1G032010.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G032010	Csa1G680080	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G032010	CSPI01G33310	Wild cucumber (PI 183967)	cgybcpiB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G032010	Watermelon (97103) v2	cgybwmbB079
CsGy1G032010	Wax gourd	cgybwgoB100
CsGy1G032010	Cucurbita maxima (Rimu)	cgybcmaB019
CsGy1G032010	Cucurbita maxima (Rimu)	cgybcmaB027
CsGy1G032010	Cucurbita moschata (Rifu)	cgybcmoB018
CsGy1G032010	Cucurbita moschata (Rifu)	cgybcmoB027
CsGy1G032010	Cucurbita pepo (Zucchini)	cgybcpeB112
CsGy1G032010	Cucurbita pepo (Zucchini)	cgybcpeB135
CsGy1G032010	Bottle gourd (USVL1VR-Ls)	cgyblsiB055
CsGy1G032010	Melon (DHL92) v3.5.1	cgybmeB040
CsGy1G032010	Melon (DHL92) v3.6.1	cgybmedB034
CsGy1G032010	Watermelon (Charleston Gray)	cgybwcgB075
CsGy1G032010	Watermelon (Charleston Gray)	cgybwcgB081
CsGy1G032010	Silver-seed gourd	carcgybB0899
CsGy1G032010	Cucumber (Chinese Long) v3	cgybcucB001