CSPI01G33310 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G33310
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 28193303 .. 28193874 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATTCCCCATTCTTCTTGGCTTGCACATGCAAAGTGGCGAAAAGTTATACATTGTCGTAGAGCATCCATTTGAACTATGATTCTCACAAAATCGTACAAGCTTGCATCTCATACTAAAATACACTTAACCCCACAGCTGTTCGTCAAAACTCACGACGGAACCCAACTTCTGGGGCCTGAACTAACCACCGAGAATGCATGTTCTCGCCCTTCAAACATCACAATCTCTTCGAAAACACTCATGCGCACTCTAGCTTTCATGTGCACTTCGTCTTGTTGTGTTGAACGATGTATCGTCCTCCTCGATAACATTGTGGCCATTCTCATGGCCCTTTCCTCGACCAGTGTCAACGTGCTTGCTTATGCACGTCAAGGTCCTTGCCCTCTTCATGTCAACATGCTTTATCATGCGTGTCGACGTGTTTTTCTATGTGTATCGACGTGCTTTCTTCTTCTCTGCCCTTAGTGGGGTCACAATCTATATCTCTCATGTATGATTGTAACACTATGGTAGGAGTTATGGTGGTGTCAACCACTCCCGAGTGCATAATCCTTAAGTTCCTTTGA

mRNA sequence

ATGGCCATTCCCCATTCTTCTTGGCTTGCACATGCAAAGTGGCGAAAACTGTTCGTCAAAACTCACGACGGAACCCAACTTCTGGGGCCTGAACTAACCACCGAGAATGCATGTTCTCGCCCTTCAAACATCACAATCTCTTCGAAAACACTCATGCGCACTCTAGCTTTCATGTGCACTTCGTCTTGTTGTGTTGAACGATGTATCGTCCTCCTCGATAACATTGTGGCCATTCTCATGGCCCTTTCCTCGACCAGTGTCAACGTGCTTGCTTATGCACGTCAAGTGGGGTCACAATCTATATCTCTCATGTATGATTGTAACACTATGGTAGGAGTTATGGTGGTGTCAACCACTCCCGAGTGCATAATCCTTAAGTTCCTTTGA

Coding sequence (CDS)

ATGGCCATTCCCCATTCTTCTTGGCTTGCACATGCAAAGTGGCGAAAACTGTTCGTCAAAACTCACGACGGAACCCAACTTCTGGGGCCTGAACTAACCACCGAGAATGCATGTTCTCGCCCTTCAAACATCACAATCTCTTCGAAAACACTCATGCGCACTCTAGCTTTCATGTGCACTTCGTCTTGTTGTGTTGAACGATGTATCGTCCTCCTCGATAACATTGTGGCCATTCTCATGGCCCTTTCCTCGACCAGTGTCAACGTGCTTGCTTATGCACGTCAAGTGGGGTCACAATCTATATCTCTCATGTATGATTGTAACACTATGGTAGGAGTTATGGTGGTGTCAACCACTCCCGAGTGCATAATCCTTAAGTTCCTTTGA

Homology

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BLAST of CSPI01G33310 vs. TrEMBL
Match: A0A0A0M3F1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G680080 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-63
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MAIPHSSWLAHAKWRKLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCT 60
           MAIPHSSWLAHAKWRKLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCT
Sbjct: 1   MAIPHSSWLAHAKWRKLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCT 60

Query: 61  SSCCVERCIVLLDNIVAILMALSSTSVNVLAYARQVGSQSISLMYDCNTMVGVMVVSTTP 120
           SSCCVERCIVLLDNIVAILMALSSTSVNVLAYARQVGSQSISLMYDCNTMVGVMVVSTTP
Sbjct: 61  SSCCVERCIVLLDNIVAILMALSSTSVNVLAYARQVGSQSISLMYDCNTMVGVMVVSTTP 120

Query: 121 ECIILKFL 129
           ECIILKFL
Sbjct: 121 ECIILKFL 128

[Close]

BLAST of CSPI01G33310 vs. NCBI nr
Match: gi|700211665|gb|KGN66761.1| (hypothetical protein Csa_1G680080 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 1.7e-63
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MAIPHSSWLAHAKWRKLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCT 60
           MAIPHSSWLAHAKWRKLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCT
Sbjct: 1   MAIPHSSWLAHAKWRKLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCT 60

Query: 61  SSCCVERCIVLLDNIVAILMALSSTSVNVLAYARQVGSQSISLMYDCNTMVGVMVVSTTP 120
           SSCCVERCIVLLDNIVAILMALSSTSVNVLAYARQVGSQSISLMYDCNTMVGVMVVSTTP
Sbjct: 61  SSCCVERCIVLLDNIVAILMALSSTSVNVLAYARQVGSQSISLMYDCNTMVGVMVVSTTP 120

Query: 121 ECIILKFL 129
           ECIILKFL
Sbjct: 121 ECIILKFL 128

The following BLAST results are available for this feature:

BLAST of CSPI01G33310 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G33310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M3F1_CUCSA	1.2e-63	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G680080 PE=4 SV=1	[more]

BLAST of CSPI01G33310 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G33310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211665\|gb\|KGN66761.1\|	1.7e-63	100.00	hypothetical protein Csa_1G680080 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G33310.1	CSPI01G33310.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G33310	Csa1G680080	Cucumber (Chinese Long) v2	cpicuB001
CSPI01G33310	CsGy1G032010	Cucumber (Gy14) v2	cgybcpiB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G33310	Cucumber (Gy14) v1	cgycpiB441
CSPI01G33310	Cucurbita maxima (Rimu)	cmacpiB090
CSPI01G33310	Cucurbita moschata (Rifu)	cmocpiB083
CSPI01G33310	Melon (DHL92) v3.5.1	cpimeB044
CSPI01G33310	Watermelon (Charleston Gray)	cpiwcgB081
CSPI01G33310	Watermelon (Charleston Gray)	cpiwcgB087
CSPI01G33310	Cucurbita pepo (Zucchini)	cpecpiB644
CSPI01G33310	Bottle gourd (USVL1VR-Ls)	cpilsiB059
CSPI01G33310	Melon (DHL92) v3.6.1	cpimedB038
CSPI01G33310	Silver-seed gourd	carcpiB0948
CSPI01G33310	Cucumber (Chinese Long) v3	cpicucB000
CSPI01G33310	Watermelon (97103) v2	cpiwmbB083