CSPI01G33310.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G33310.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr1 : 28193303 .. 28193874 (-)
Sequence length	387

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATTCCCCATTCTTCTTGGCTTGCACATGCAAAGTGGCGAAAAGTTATACATTGTCGTAGAGCATCCATTTGAACTATGATTCTCACAAAATCGTACAAGCTTGCATCTCATACTAAAATACACTTAACCCCACAGCTGTTCGTCAAAACTCACGACGGAACCCAACTTCTGGGGCCTGAACTAACCACCGAGAATGCATGTTCTCGCCCTTCAAACATCACAATCTCTTCGAAAACACTCATGCGCACTCTAGCTTTCATGTGCACTTCGTCTTGTTGTGTTGAACGATGTATCGTCCTCCTCGATAACATTGTGGCCATTCTCATGGCCCTTTCCTCGACCAGTGTCAACGTGCTTGCTTATGCACGTCAAGGTCCTTGCCCTCTTCATGTCAACATGCTTTATCATGCGTGTCGACGTGTTTTTCTATGTGTATCGACGTGCTTTCTTCTTCTCTGCCCTTAGTGGGGTCACAATCTATATCTCTCATGTATGATTGTAACACTATGGTAGGAGTTATGGTGGTGTCAACCACTCCCGAGTGCATAATCCTTAAGTTCCTTTGA

mRNA sequence

ATGGCCATTCCCCATTCTTCTTGGCTTGCACATGCAAAGTGGCGAAAACTGTTCGTCAAAACTCACGACGGAACCCAACTTCTGGGGCCTGAACTAACCACCGAGAATGCATGTTCTCGCCCTTCAAACATCACAATCTCTTCGAAAACACTCATGCGCACTCTAGCTTTCATGTGCACTTCGTCTTGTTGTGTTGAACGATGTATCGTCCTCCTCGATAACATTGTGGCCATTCTCATGGCCCTTTCCTCGACCAGTGTCAACGTGCTTGCTTATGCACGTCAAGTGGGGTCACAATCTATATCTCTCATGTATGATTGTAACACTATGGTAGGAGTTATGGTGGTGTCAACCACTCCCGAGTGCATAATCCTTAAGTTCCTTTGA

Coding sequence (CDS)

ATGGCCATTCCCCATTCTTCTTGGCTTGCACATGCAAAGTGGCGAAAACTGTTCGTCAAAACTCACGACGGAACCCAACTTCTGGGGCCTGAACTAACCACCGAGAATGCATGTTCTCGCCCTTCAAACATCACAATCTCTTCGAAAACACTCATGCGCACTCTAGCTTTCATGTGCACTTCGTCTTGTTGTGTTGAACGATGTATCGTCCTCCTCGATAACATTGTGGCCATTCTCATGGCCCTTTCCTCGACCAGTGTCAACGTGCTTGCTTATGCACGTCAAGTGGGGTCACAATCTATATCTCTCATGTATGATTGTAACACTATGGTAGGAGTTATGGTGGTGTCAACCACTCCCGAGTGCATAATCCTTAAGTTCCTTTGA

Homology

[Close]

BLAST of CSPI01G33310.1 vs. TrEMBL
Match: A0A0A0M3F1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G680080 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-63
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MAIPHSSWLAHAKWRKLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCT 60
           MAIPHSSWLAHAKWRKLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCT
Sbjct: 1   MAIPHSSWLAHAKWRKLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCT 60

Query: 61  SSCCVERCIVLLDNIVAILMALSSTSVNVLAYARQVGSQSISLMYDCNTMVGVMVVSTTP 120
           SSCCVERCIVLLDNIVAILMALSSTSVNVLAYARQVGSQSISLMYDCNTMVGVMVVSTTP
Sbjct: 61  SSCCVERCIVLLDNIVAILMALSSTSVNVLAYARQVGSQSISLMYDCNTMVGVMVVSTTP 120

Query: 121 ECIILKFL 129
           ECIILKFL
Sbjct: 121 ECIILKFL 128

[Close]

BLAST of CSPI01G33310.1 vs. NCBI nr
Match: gi|700211665|gb|KGN66761.1| (hypothetical protein Csa_1G680080 [Cucumis sativus])

HSP 1 Score: 250.4 bits (638), Expect = 1.7e-63
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 1


Query: 1   MAIPHSSWLAHAKWRKLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCT 60
           MAIPHSSWLAHAKWRKLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCT
Sbjct: 1   MAIPHSSWLAHAKWRKLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCT 60

Query: 61  SSCCVERCIVLLDNIVAILMALSSTSVNVLAYARQVGSQSISLMYDCNTMVGVMVVSTTP 120
           SSCCVERCIVLLDNIVAILMALSSTSVNVLAYARQVGSQSISLMYDCNTMVGVMVVSTTP
Sbjct: 61  SSCCVERCIVLLDNIVAILMALSSTSVNVLAYARQVGSQSISLMYDCNTMVGVMVVSTTP 120

Query: 121 ECIILKFL 129
           ECIILKFL
Sbjct: 121 ECIILKFL 128

The following BLAST results are available for this feature:

BLAST of CSPI01G33310.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI01G33310.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M3F1_CUCSA	1.2e-63	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G680080 PE=4 SV=1	[more]

BLAST of CSPI01G33310.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI01G33310.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211665\|gb\|KGN66761.1\|	1.7e-63	100.00	hypothetical protein Csa_1G680080 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI01G33310	CSPI01G33310	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI01G33310.1	CSPI01G33310.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI01G33310.1.cds3	CSPI01G33310.1.cds3	CDS
CSPI01G33310.1.cds2	CSPI01G33310.1.cds2	CDS
CSPI01G33310.1.cds1	CSPI01G33310.1.cds1	CDS