CsGy1G032010.1 (mRNA) Cucumber (Gy14) v2

Overview
NameCsGy1G032010.1
TypemRNA
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 31126780 .. 31127270 (-)
Sequence length444
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTCTCACAAAATCGTACAAGCTTGCATCTCATACTAAAATACACTTAACCCCACAGCTGTTCGTCAAAACTCACGACGGAACCCAACTTCTGGGGCCTGAACTAACCACCGAGAATGCATGTTCTCGCCCTTCAAACATCACAATCTCTTCGAAAACACTCATGCGCACTCTAGCTTTCATGTGCACTTCGTCTTGTTGTGTTGAACGATGTATCGTCCTCCTCGATAACATTGTGGCCATTCTCATGGCCCTTTCCTCGACCAGTGTCAACGTGCTTGCTTATGCACGTCAAGGTCCTTGCCCTCTTCATGTCAACATGCTTTATCATGCGTGTCGACGTGTTTTTCTATGTGTATCGACGTGCTTTCTTCTTCTCTGCCCTTAGTGGGGTCACAATCTATATCTCTCATGTATGATTGTAACACTATGGTAGGAGTTATGGTGGTGTCAACCACTCCCGAGTGCATAATCCTTAAGTTCCTTTGA

mRNA sequence

ATGATTCTCACAAAATCGTACAAGCTTGCATCTCATACTAAAATACACTTAACCCCACAGCTGTTCGTCAAAACTCACGACGGAACCCAACTTCTGGGGCCTGAACTAACCACCGAGAATGCATGTTCTCGCCCTTCAAACATCACAATCTCTTCGAAAACACTCATGCGCACTCTAGCTTTCATGTGCACTTCGTCTTGTTGTGTTGAACGATGTATCGTCCTCCTCGATAACATTGTGGCCATTCTCATGGCCCTTTCCTCGACCAGTGTCAACGTGCTTGCTTATGCACGTCAAGGTCCTTGCCCTCTTCATGTCAACATGCTTTATCATGCGTGTCGACTGGGGTCACAATCTATATCTCTCATGTATGATTGTAACACTATGGTAGGAGTTATGGTGGTGTCAACCACTCCCGAGTGCATAATCCTTAAGTTCCTTTGA

Coding sequence (CDS)

ATGATTCTCACAAAATCGTACAAGCTTGCATCTCATACTAAAATACACTTAACCCCACAGCTGTTCGTCAAAACTCACGACGGAACCCAACTTCTGGGGCCTGAACTAACCACCGAGAATGCATGTTCTCGCCCTTCAAACATCACAATCTCTTCGAAAACACTCATGCGCACTCTAGCTTTCATGTGCACTTCGTCTTGTTGTGTTGAACGATGTATCGTCCTCCTCGATAACATTGTGGCCATTCTCATGGCCCTTTCCTCGACCAGTGTCAACGTGCTTGCTTATGCACGTCAAGGTCCTTGCCCTCTTCATGTCAACATGCTTTATCATGCGTGTCGACTGGGGTCACAATCTATATCTCTCATGTATGATTGTAACACTATGGTAGGAGTTATGGTGGTGTCAACCACTCCCGAGTGCATAATCCTTAAGTTCCTTTGA

Protein sequence

MILTKSYKLASHTKIHLTPQLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCTSSCCVERCIVLLDNIVAILMALSSTSVNVLAYARQGPCPLHVNMLYHACRLGSQSISLMYDCNTMVGVMVVSTTPECIILKFL
Homology
[Close]
BLAST of CsGy1G032010.1 vs. NCBI nr
Match: KGN66761.1 (hypothetical protein Csa_1G680080 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 5.4e-49
Identity = 111/128 (86.72%), Postives = 113/128 (88.28%), Query Frame = 0 

Query: 20  QLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCTSSCCVERCIVLLDNI 79
           +LFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCTSSCCVERCIVLLDNI
Sbjct: 16  KLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCTSSCCVERCIVLLDNI 75

Query: 80  VAILMALSSTSVNVLAYARQGPCPLHVNMLYHACRLGSQSISLMYDCNTMVGVMVVSTTP 139
           VAILMALSSTSVNVLAYARQ               +GSQSISLMYDCNTMVGVMVVSTTP
Sbjct: 76  VAILMALSSTSVNVLAYARQ---------------VGSQSISLMYDCNTMVGVMVVSTTP 128

Query: 140 ECIILKFL 148
           ECIILKFL
Sbjct: 136 ECIILKFL 128

[Close]
BLAST of CsGy1G032010.1 vs. TrEMBL
Match: tr|A0A0A0M3F1|A0A0A0M3F1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G680080 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.6e-49
Identity = 111/128 (86.72%), Postives = 113/128 (88.28%), Query Frame = 0 

Query: 20  QLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCTSSCCVERCIVLLDNI 79
           +LFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCTSSCCVERCIVLLDNI
Sbjct: 16  KLFVKTHDGTQLLGPELTTENACSRPSNITISSKTLMRTLAFMCTSSCCVERCIVLLDNI 75

Query: 80  VAILMALSSTSVNVLAYARQGPCPLHVNMLYHACRLGSQSISLMYDCNTMVGVMVVSTTP 139
           VAILMALSSTSVNVLAYARQ               +GSQSISLMYDCNTMVGVMVVSTTP
Sbjct: 76  VAILMALSSTSVNVLAYARQ---------------VGSQSISLMYDCNTMVGVMVVSTTP 128

Query: 140 ECIILKFL 148
           ECIILKFL
Sbjct: 136 ECIILKFL 128

The following BLAST results are available for this feature:
BLAST of CsGy1G032010.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66761.15.4e-4986.72hypothetical protein Csa_1G680080 [Cucumis sativus][more]
BLAST of CsGy1G032010.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G032010.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G032010.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0M3F1|A0A0A0M3F1_CUCSA3.6e-4986.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G680080 PE=4 SV=1[more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CsGy1G032010CsGy1G032010gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G032010.1.CDS.2CsGy1G032010.1.CDS.2CDS
CsGy1G032010.1.CDS.1CsGy1G032010.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CsGy1G032010.1.exon.2CsGy1G032010.1.exon.2exon
CsGy1G032010.1.exon.1CsGy1G032010.1.exon.1exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CsGy1G032010.1CsGy1G032010.1-proteinpolypeptide