CsGy1G030370 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G030370
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	60S ribosomal protein L10a
Location	Chr1 : 28645498 .. 28647569 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAACAAACTTCATAGTGATGCGTTGAGAGAAGCCATTTCATCTATATTTGCTGATAGCGGTGAAAAGAAGCGCAAATTCACCGAGACCATTGAACTTCATATTGGACTGAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGCCGCATATCCCTCGCCCTAAGATGAAGATCTGCATTCTTGGAGATGTTTCACATGTTGAAGAGGTAACTTAATCTCCTCTTTTACATCTTCACTTAATCACTTGTTATGCTCAGTTACTGTTTTCCTTGGTTTTTTTTCCGTAGAGGAGATGATTACTAGTTTGTATGTTGCTTGCTTATTTCGTTATGCTCGATGATGTGCGATGAAATTTATGAAAAATCTCAATAGTTGGAGTTAAAAGTTAAAGGTCAGAGTTTTAATGTTATTCTTATTTCATTTGTAGATTTCAAGGAGTTGAGGACAACAATCGGTGAGACTTTGATCAGTTTGGAGTTATCTAAGAGTGTTGTGGTACTTGGAGGAAGGTGATGTCTCCGTTTCTTATTATTACATATACTTTGTGTTTATGATTAAGAACAATGTTCATAACTCATTTTGTAATATGAATAAGAACGATATGTTTCCATGTTGTAAGTATATTGTAATGACAAACTATATGTATATGTTCAATGATATATATGCAATTTGTTAGTTATTTGATTGAAGTTTGGGGTTGATTAAAGAAATGTAAATAGTTCAATTGATCGTGTTGTATACAATTGTTGGACTTCAAAACAGGTGCAAAATATAATTATATGGGTGTTTTAAATTGTACAATTTTTCATTTGAAAAAAAAAATTCTTGACATGTAAAACGTGTCAAGAATAAACAAATTCTTGACGTTTATAAACTGTCAAGTATATATTTACTTGACGCATAAAAATTGTCAAACAAAAAACTCTCTTATTCTTGACACTGGATTACTTGACGCGTGAAAAGAGTCAAGTAATCTTATATATTTTATTACTTGACGCTTTTTACCTGTCAAGTAGAATTGTACTTAACGCTTAAAAACTGTCAAGTAAACCTCCATTATTCTTAACACTGGATTACTTGACACATTGAAAAGCGTTAAGTAAACAGATACTTGACAGTTTTTAAGTGTCAAGTATTGCCAGTTTTATAGTAGTGTTTATCGAGTTTTTCTTCTGCAAATTCTACTTTTGATAGTACAACTGCTATTTCCATTGATCGAAGACTTCTAGCCACAACATTTTATTGCAAACATCTTTTTACGTGTGAGAACCACGTTGGTTTAACACTTTTTTTTTCTAGATTCACAAGTTAAATCACAGCTATAGCTAATCCTTTAACAAACATAGGATGTAACCTATTCCTATCTTTTTCGATAGGTTGGAGATCAAAGTATTACAAATTTATTTTTTAGTTTTAAGAATTAAACAACTACACTCACGAATCAAACTCTCATAATAAGTTAGATGTAGAAAAGTTTAACTCCAAACGATAACAAATGTAATTCATAAAGATAACAAATGAATCCTGAGGTAATTAATACTGAGCATTTGGAGGAATTGAAATCATCGTTGATTTTTAAAAGGAAATTACATCAAACGACAAAAACATTTAGAAAAGAACAGTTCAATGGCACCAAGTTTTTGCATATTACGAATATGGCAAAATTAGCGTTATTAGACGACCATCAGACGATAATTATAGGACCATCAGACGGTAGTTATAGGACTATCAAAGAGTCATCACTTTTAAATTTGCTACTTTTGTAAATTTAGAAGATGTTGATAACATGGACTCTATTACCATAATTTTTTCTTTGCTATTTTTACTAAAACTTCATTTTCAAATAGGTAATTATTGAAATTTAAAAAGAATTTTCAACTAGTTACAAAGACTAATACTATTAAAACGCACCATTCTATCAGAATAGAACAACTTTTTAGGTGCTTAAAAATATATTAACACTTGAAAAACTGTTCTAAATATGACAGACATCTAATTCTAAAATCAACAGTCTAATAATAAACTCAACTTTTCTATACAGATGAAGTAA

mRNA sequence

ATGTACAACAAACTTCATAGTGATGCGTTGAGAGAAGCCATTTCATCTATATTTGCTGATAGCGGTGAAAAGAAGCGCAAATTCACCGAGACCATTGAACTTCATATTGGACTGAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGCCGCATATCCCTCGCCCTAAGATGAAGATCTGCATTCTTGGAGATGTTTCACATGTTGAAGAGATGAAGTAA

Coding sequence (CDS)

ATGTACAACAAACTTCATAGTGATGCGTTGAGAGAAGCCATTTCATCTATATTTGCTGATAGCGGTGAAAAGAAGCGCAAATTCACCGAGACCATTGAACTTCATATTGGACTGAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGCCGCATATCCCTCGCCCTAAGATGAAGATCTGCATTCTTGGAGATGTTTCACATGTTGAAGAGATGAAGTAA

Protein sequence

MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEEMK

Homology

[Close]

BLAST of CsGy1G030370 vs. NCBI nr
Match: KGN66562.1 (hypothetical protein Csa_1G629190 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 8.1e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPR 60
          MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPR
Sbjct: 1  MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPR 60

Query: 61 PKMKICILGDVSHVEEM 78
          PKMKICILGDVSHVEE+
Sbjct: 61 PKMKICILGDVSHVEEV 77

[Close]

BLAST of CsGy1G030370 vs. NCBI nr
Match: XP_008458587.1 (PREDICTED: 60S ribosomal protein L10a [Cucumis melo] >XP_011657068.1 PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis sativus] >KGN46947.1 hypothetical protein Csa_6G152330 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 4.6e-31
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL SDALREAISSIFADSGEKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD SHVEE
Sbjct: 62 MKICMLGDASHVEE 75

[Close]

BLAST of CsGy1G030370 vs. NCBI nr
Match: XP_004139485.1 (PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus] >KGN64929.1 hypothetical protein Csa_1G163140 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 8.7e-30
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL SDALREAISSIF DS EKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD SH+EE
Sbjct: 62 MKICMLGDASHIEE 75

[Close]

BLAST of CsGy1G030370 vs. NCBI nr
Match: XP_008461453.1 (PREDICTED: 60S ribosomal protein L10a [Cucumis melo])

HSP 1 Score: 138.7 bits (348), Expect = 8.7e-30
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL SDALREAISSIF DS EKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD SH+EE
Sbjct: 62 MKICMLGDASHIEE 75

[Close]

BLAST of CsGy1G030370 vs. NCBI nr
Match: XP_022142655.1 (60S ribosomal protein L10a [Momordica charantia] >XP_022142656.1 60S ribosomal protein L10a [Momordica charantia])

HSP 1 Score: 136.0 bits (341), Expect = 5.6e-29
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL SDALREAI+SIF+DS EKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSDALREAITSIFSDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD  HVEE
Sbjct: 62 MKICMLGDALHVEE 75

[Close]

BLAST of CsGy1G030370 vs. TAIR10
Match: AT2G27530.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 121.3 bits (303), Expect = 2.6e-28
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL S+A+REAI++I   S EKKR F ET+EL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD  HVEE
Sbjct: 62 MKICMLGDAQHVEE 75

[Close]

BLAST of CsGy1G030370 vs. TAIR10
Match: AT1G08360.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 119.8 bits (299), Expect = 7.6e-28
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL S+A+REAI++I   S  KKR F ETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD  HVEE
Sbjct: 62 MKICMLGDAQHVEE 75

[Close]

BLAST of CsGy1G030370 vs. TAIR10
Match: AT5G22440.1 (Ribosomal protein L1p/L10e family)

HSP 1 Score: 117.9 bits (294), Expect = 2.9e-27
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 3  NKLHSDALREAISSIFADSGE-KKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRP 62
          +KL S+A+REAISSI     E K R FTETIEL IGLKNYDPQKDKRFSGSVKLPH+PRP
Sbjct: 2  SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61

Query: 63 KMKICILGDVSHVEE 77
          KMKIC+LGD  HVEE
Sbjct: 62 KMKICMLGDAQHVEE 76

[Close]

BLAST of CsGy1G030370 vs. Swiss-Prot
Match: sp|B8B9K6|R10A_ORYSI (60S ribosomal protein L10a OS=Oryza sativa subsp. indica OX=39946 GN=RPL10A PE=3 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-27
Identity = 56/74 (75.68%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL S+ L+EAIS +  +S EK RKFTET+EL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MK+C+LGD  HVEE
Sbjct: 62 MKVCMLGDAQHVEE 75

[Close]

BLAST of CsGy1G030370 vs. Swiss-Prot
Match: sp|B7F845|R10A_ORYSJ (60S ribosomal protein L10a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL10A PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-27
Identity = 56/74 (75.68%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL S+ L+EAIS +  +S EK RKFTET+EL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MK+C+LGD  HVEE
Sbjct: 62 MKVCMLGDAQHVEE 75

[Close]

BLAST of CsGy1G030370 vs. Swiss-Prot
Match: sp|P59230|R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.7e-27
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL S+A+REAI++I   S EKKR F ET+EL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD  HVEE
Sbjct: 62 MKICMLGDAQHVEE 75

[Close]

BLAST of CsGy1G030370 vs. Swiss-Prot
Match: sp|Q8VZB9|R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.4e-26
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 0


Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL S+A+REAI++I   S  KKR F ETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD  HVEE
Sbjct: 62 MKICMLGDAQHVEE 75

[Close]

BLAST of CsGy1G030370 vs. Swiss-Prot
Match: sp|P59231|R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL10AC PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.2e-26
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 0


Query: 3  NKLHSDALREAISSIFADSGE-KKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRP 62
          +KL S+A+REAISSI     E K R FTETIEL IGLKNYDPQKDKRFSGSVKLPH+PRP
Sbjct: 2  SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61

Query: 63 KMKICILGDVSHVEE 77
          KMKIC+LGD  HVEE
Sbjct: 62 KMKICMLGDAQHVEE 76

[Close]

BLAST of CsGy1G030370 vs. TrEMBL
Match: tr|A0A0A0M0B3|A0A0A0M0B3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629190 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.4e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPR 60
          MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPR
Sbjct: 1  MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPR 60

Query: 61 PKMKICILGDVSHVEEM 78
          PKMKICILGDVSHVEE+
Sbjct: 61 PKMKICILGDVSHVEEV 77

[Close]

BLAST of CsGy1G030370 vs. TrEMBL
Match: tr|A0A1S3C7Q8|A0A1S3C7Q8_CUCME (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103497946 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.0e-31
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL SDALREAISSIFADSGEKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD SHVEE
Sbjct: 62 MKICMLGDASHVEE 75

[Close]

BLAST of CsGy1G030370 vs. TrEMBL
Match: tr|A0A0A0KEW8|A0A0A0KEW8_CUCSA (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_6G152330 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.0e-31
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0


Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL SDALREAISSIFADSGEKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD SHVEE
Sbjct: 62 MKICMLGDASHVEE 75

[Close]

BLAST of CsGy1G030370 vs. TrEMBL
Match: tr|A0A1S3CEF7|A0A1S3CEF7_CUCME (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500042 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.7e-30
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL SDALREAISSIF DS EKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD SH+EE
Sbjct: 62 MKICMLGDASHIEE 75

[Close]

BLAST of CsGy1G030370 vs. TrEMBL
Match: tr|A0A0A0LVE6|A0A0A0LVE6_CUCSA (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_1G163140 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 5.7e-30
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL SDALREAISSIF DS EKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD SH+EE
Sbjct: 62 MKICMLGDASHIEE 75

The following BLAST results are available for this feature:

BLAST of CsGy1G030370 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66562.1	8.1e-36	98.70	hypothetical protein Csa_1G629190 [Cucumis sativus]	[more]
XP_008458587.1	4.6e-31	93.24	PREDICTED: 60S ribosomal protein L10a [Cucumis melo] >XP_011657068.1 PREDICTED: ...	[more]
XP_004139485.1	8.7e-30	89.19	PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus] >KGN64929.1 hypothetic...	[more]
XP_008461453.1	8.7e-30	89.19	PREDICTED: 60S ribosomal protein L10a [Cucumis melo]	[more]
XP_022142655.1	5.6e-29	87.84	60S ribosomal protein L10a [Momordica charantia] >XP_022142656.1 60S ribosomal p...	[more]

BLAST of CsGy1G030370 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27530.1	2.6e-28	77.03	Ribosomal protein L1p/L10e family	[more]
AT1G08360.1	7.6e-28	77.03	Ribosomal protein L1p/L10e family	[more]
AT5G22440.1	2.9e-27	77.33	Ribosomal protein L1p/L10e family	[more]

BLAST of CsGy1G030370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|B8B9K6\|R10A_ORYSI	1.6e-27	75.68	60S ribosomal protein L10a OS=Oryza sativa subsp. indica OX=39946 GN=RPL10A PE=3...	[more]
sp\|B7F845\|R10A_ORYSJ	1.6e-27	75.68	60S ribosomal protein L10a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL10A PE...	[more]
sp\|P59230\|R10A2_ARATH	4.7e-27	77.03	60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=...	[more]
sp\|Q8VZB9\|R10A1_ARATH	1.4e-26	77.03	60S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=...	[more]
sp\|P59231\|R10A3_ARATH	5.2e-26	77.33	60S ribosomal protein L10a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL10AC PE=1 SV=...	[more]

BLAST of CsGy1G030370 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0M0B3\|A0A0A0M0B3_CUCSA	5.4e-36	98.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629190 PE=4 SV=1	[more]
tr\|A0A1S3C7Q8\|A0A1S3C7Q8_CUCME	3.0e-31	93.24	Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103497946 PE=3 SV=1	[more]
tr\|A0A0A0KEW8\|A0A0A0KEW8_CUCSA	3.0e-31	93.24	Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_6G152330 PE=3 SV=1	[more]
tr\|A0A1S3CEF7\|A0A1S3CEF7_CUCME	5.7e-30	89.19	Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500042 PE=3 SV=1	[more]
tr\|A0A0A0LVE6\|A0A0A0LVE6_CUCSA	5.7e-30	89.19	Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_1G163140 PE=3 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023674	Ribosomal_L1-like
IPR028364	Ribosomal_L1/biogenesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G030370.1	CsGy1G030370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein	PFAM	PF00687	Ribosomal_L1	coord: 24..73 e-value: 1.1E-7 score: 31.7
None	No IPR available	GENE3D	G3DSA:3.30.190.20		coord: 2..78 e-value: 1.7E-27 score: 97.7
None	No IPR available	PANTHER	PTHR23105:SF98	60S RIBOSOMAL PROTEIN L10A-1-RELATED	coord: 3..77
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 3..77
IPR023674	Ribosomal protein L1-like	SUPERFAMILY	SSF56808	Ribosomal protein L1	coord: 2..78

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G030370	Csa1G629190	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G030370	CSPI01G31180	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G030370	CsaV3_1G043550	Cucumber (Chinese Long) v3	cgybcucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G030370	Cucurbita maxima (Rimu)	cgybcmaB013
CsGy1G030370	Cucurbita maxima (Rimu)	cgybcmaB027
CsGy1G030370	Cucurbita maxima (Rimu)	cgybcmaB120
CsGy1G030370	Cucurbita moschata (Rifu)	cgybcmoB013
CsGy1G030370	Cucurbita moschata (Rifu)	cgybcmoB027
CsGy1G030370	Cucurbita moschata (Rifu)	cgybcmoB110
CsGy1G030370	Cucurbita pepo (Zucchini)	cgybcpeB039
CsGy1G030370	Cucurbita pepo (Zucchini)	cgybcpeB125
CsGy1G030370	Cucurbita pepo (Zucchini)	cgybcpeB137
CsGy1G030370	Bottle gourd (USVL1VR-Ls)	cgyblsiB055
CsGy1G030370	Melon (DHL92) v3.5.1	cgybmeB038
CsGy1G030370	Melon (DHL92) v3.6.1	cgybmedB032
CsGy1G030370	Watermelon (Charleston Gray)	cgybwcgB043
CsGy1G030370	Watermelon (97103) v1	cgybwmB024
CsGy1G030370	Silver-seed gourd	carcgybB0878
CsGy1G030370	Silver-seed gourd	carcgybB0905
CsGy1G030370	Silver-seed gourd	carcgybB0955
CsGy1G030370	Watermelon (97103) v2	cgybwmbB041
CsGy1G030370	Wax gourd	cgybwgoB094