CsaV3_1G043550 (gene) Cucumber (Chinese Long) v3
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGTACAACAAACTTCATAGTGATGCGTTGAGAGAAGCCATTTCATCTATATTTGCTGATAGCGGTGAAAAGAAGCGCAAATTCACCGAGACCATTGAACTTCATATTGGACTGAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGCCGCATATCCCTCGCCCTAAGATGAAGATCTGCATTCTTGGAGATGTTTCACATGTTGAAGAGGTAACTTAATCTCCTCTTTTACATCTTCACTTAATCACTTGTTATGCTCAGTTACTGTTTTCCTTGGTTTTTTTTCCGTAGAGGAGATGA ATGTACAACAAACTTCATAGTGATGCGTTGAGAGAAGCCATTTCATCTATATTTGCTGATAGCGGTGAAAAGAAGCGCAAATTCACCGAGACCATTGAACTTCATATTGGACTGAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGCCGCATATCCCTCGCCCTAAGATGAAGATCTGCATTCTTGGAGATGTTTCACATGTTGAAGAGAGGAGATGA ATGTACAACAAACTTCATAGTGATGCGTTGAGAGAAGCCATTTCATCTATATTTGCTGATAGCGGTGAAAAGAAGCGCAAATTCACCGAGACCATTGAACTTCATATTGGACTGAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGCCGCATATCCCTCGCCCTAAGATGAAGATCTGCATTCTTGGAGATGTTTCACATGTTGAAGAGAGGAGATGA MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEERR
BLAST of CsaV3_1G043550 vs. NCBI nr
Match: KGN66562.1 (hypothetical protein Csa_1G629190 [Cucumis sativus]) HSP 1 Score: 159.1 bits (401), Expect = 6.3e-36 Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0
BLAST of CsaV3_1G043550 vs. NCBI nr
Match: XP_008458587.1 (PREDICTED: 60S ribosomal protein L10a [Cucumis melo] >XP_011657068.1 PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis sativus] >KGN46947.1 hypothetical protein Csa_6G152330 [Cucumis sativus]) HSP 1 Score: 143.7 bits (361), Expect = 2.7e-31 Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0
BLAST of CsaV3_1G043550 vs. NCBI nr
Match: XP_004139485.1 (PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus] >KGN64929.1 hypothetical protein Csa_1G163140 [Cucumis sativus]) HSP 1 Score: 139.4 bits (350), Expect = 5.2e-30 Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0
BLAST of CsaV3_1G043550 vs. NCBI nr
Match: XP_008461453.1 (PREDICTED: 60S ribosomal protein L10a [Cucumis melo]) HSP 1 Score: 139.4 bits (350), Expect = 5.2e-30 Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0
BLAST of CsaV3_1G043550 vs. NCBI nr
Match: XP_022142655.1 (60S ribosomal protein L10a [Momordica charantia] >XP_022142656.1 60S ribosomal protein L10a [Momordica charantia]) HSP 1 Score: 136.7 bits (343), Expect = 3.3e-29 Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 0
BLAST of CsaV3_1G043550 vs. TAIR10
Match: AT2G27530.1 (Ribosomal protein L1p/L10e family) HSP 1 Score: 122.1 bits (305), Expect = 1.5e-28 Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0
BLAST of CsaV3_1G043550 vs. TAIR10
Match: AT1G08360.1 (Ribosomal protein L1p/L10e family) HSP 1 Score: 120.6 bits (301), Expect = 4.5e-28 Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 0
BLAST of CsaV3_1G043550 vs. TAIR10
Match: AT5G22440.1 (Ribosomal protein L1p/L10e family) HSP 1 Score: 118.6 bits (296), Expect = 1.7e-27 Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 0
BLAST of CsaV3_1G043550 vs. Swiss-Prot
Match: sp|B8B9K6|R10A_ORYSI (60S ribosomal protein L10a OS=Oryza sativa subsp. indica OX=39946 GN=RPL10A PE=3 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 9.6e-28 Identity = 56/74 (75.68%), Postives = 64/74 (86.49%), Query Frame = 0
BLAST of CsaV3_1G043550 vs. Swiss-Prot
Match: sp|B7F845|R10A_ORYSJ (60S ribosomal protein L10a OS=Oryza sativa subsp. japonica OX=39947 GN=RPL10A PE=1 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 9.6e-28 Identity = 56/74 (75.68%), Postives = 64/74 (86.49%), Query Frame = 0
BLAST of CsaV3_1G043550 vs. Swiss-Prot
Match: sp|P59230|R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana OX=3702 GN=RPL10AB PE=1 SV=1) HSP 1 Score: 122.1 bits (305), Expect = 2.8e-27 Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 0
BLAST of CsaV3_1G043550 vs. Swiss-Prot
Match: sp|Q8VZB9|R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana OX=3702 GN=RPL10AA PE=1 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 8.1e-27 Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = 0
BLAST of CsaV3_1G043550 vs. Swiss-Prot
Match: sp|P59231|R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana OX=3702 GN=RPL10AC PE=1 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 3.1e-26 Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 0
BLAST of CsaV3_1G043550 vs. TrEMBL
Match: tr|A0A0A0M0B3|A0A0A0M0B3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629190 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 4.2e-36 Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0
BLAST of CsaV3_1G043550 vs. TrEMBL
Match: tr|A0A1S3C7Q8|A0A1S3C7Q8_CUCME (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103497946 PE=3 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 1.8e-31 Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0
BLAST of CsaV3_1G043550 vs. TrEMBL
Match: tr|A0A0A0KEW8|A0A0A0KEW8_CUCSA (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_6G152330 PE=3 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 1.8e-31 Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 0
BLAST of CsaV3_1G043550 vs. TrEMBL
Match: tr|A0A1S3CEF7|A0A1S3CEF7_CUCME (Ribosomal protein OS=Cucumis melo OX=3656 GN=LOC103500042 PE=3 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 3.4e-30 Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0
BLAST of CsaV3_1G043550 vs. TrEMBL
Match: tr|A0A0A0LVE6|A0A0A0LVE6_CUCSA (Ribosomal protein OS=Cucumis sativus OX=3659 GN=Csa_1G163140 PE=3 SV=1) HSP 1 Score: 139.4 bits (350), Expect = 3.4e-30 Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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