Csa1G629190 (gene) Cucumber (Chinese Long) v2

NameCsa1G629190
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionRibosomal protein; contains IPR002143 (Ribosomal protein L1), IPR023674 (Ribosomal protein L1, superfamily)
LocationChr1 : 24982638 .. 24982874 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAACAAACTTCATAGTGATGCGTTGAGAGAAGCCATTTCATCTATATTTGCTGATAGCGGTGAAAAGAAGCGCAAATTCACCGAGACCATTGAACTTCATATTGGACTGAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGCCGCATATCCCTCGCCCTAAGATGAAGATCTGCATTCTTGGAGATGTTTCACATGTTGAAGAGGTAACTTAA

mRNA sequence

ATGTACAACAAACTTCATAGTGATGCGTTGAGAGAAGCCATTTCATCTATATTTGCTGATAGCGGTGAAAAGAAGCGCAAATTCACCGAGACCATTGAACTTCATATTGGACTGAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGCCGCATATCCCTCGCCCTAAGATGAAGATCTGCATTCTTGGAGATGTTTCACATGTTGAAGAGGTAACTTAA

Coding sequence (CDS)

ATGTACAACAAACTTCATAGTGATGCGTTGAGAGAAGCCATTTCATCTATATTTGCTGATAGCGGTGAAAAGAAGCGCAAATTCACCGAGACCATTGAACTTCATATTGGACTGAAGAACTATGATCCACAAAAGGACAAGCGTTTCAGTGGTTCAGTGAAGTTGCCGCATATCCCTCGCCCTAAGATGAAGATCTGCATTCTTGGAGATGTTTCACATGTTGAAGAGGTAACTTAA

Protein sequence

MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICILGDVSHVEEVT*
BLAST of Csa1G629190 vs. Swiss-Prot
Match: R10A_ORYSI (60S ribosomal protein L10a OS=Oryza sativa subsp. indica GN=RPL10A PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.6e-27
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 1

Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL S+ L+EAIS +  +S EK RKFTET+EL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MK+C+LGD  HVEE
Sbjct: 62 MKVCMLGDAQHVEE 75

BLAST of Csa1G629190 vs. Swiss-Prot
Match: R10A_ORYSJ (60S ribosomal protein L10a OS=Oryza sativa subsp. japonica GN=RPL10A PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 3.6e-27
Identity = 56/74 (75.68%), Postives = 62/74 (83.78%), Query Frame = 1

Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL S+ L+EAIS +  +S EK RKFTET+EL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSEVLKEAISQVVGESKEKGRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MK+C+LGD  HVEE
Sbjct: 62 MKVCMLGDAQHVEE 75

BLAST of Csa1G629190 vs. Swiss-Prot
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.0e-26
Identity = 57/74 (77.03%), Postives = 62/74 (83.78%), Query Frame = 1

Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL S+A+REAI++I   S EKKR F ET+EL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD  HVEE
Sbjct: 62 MKICMLGDAQHVEE 75

BLAST of Csa1G629190 vs. Swiss-Prot
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.0e-26
Identity = 57/74 (77.03%), Postives = 61/74 (82.43%), Query Frame = 1

Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL S+A+REAI++I   S  KKR F ETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD  HVEE
Sbjct: 62 MKICMLGDAQHVEE 75

BLAST of Csa1G629190 vs. Swiss-Prot
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-25
Identity = 58/75 (77.33%), Postives = 61/75 (81.33%), Query Frame = 1

Query: 3  NKLHSDALREAISSIFADSGEKK-RKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRP 62
          +KL S+A+REAISSI     E K R FTETIEL IGLKNYDPQKDKRFSGSVKLPH+PRP
Sbjct: 2  SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61

Query: 63 KMKICILGDVSHVEE 77
          KMKIC+LGD  HVEE
Sbjct: 62 KMKICMLGDAQHVEE 76

BLAST of Csa1G629190 vs. TrEMBL
Match: A0A0A0M0B3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629190 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 7.7e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1

Query: 1  MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPR 60
          MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPR
Sbjct: 1  MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPR 60

Query: 61 PKMKICILGDVSHVEEVT 79
          PKMKICILGDVSHVEEVT
Sbjct: 61 PKMKICILGDVSHVEEVT 78

BLAST of Csa1G629190 vs. TrEMBL
Match: A0A0A0KEW8_CUCSA (Ribosomal protein OS=Cucumis sativus GN=Csa_6G152330 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.7e-31
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 1

Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL SDALREAISSIFADSGEKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD SHVEE
Sbjct: 62 MKICMLGDASHVEE 75

BLAST of Csa1G629190 vs. TrEMBL
Match: A0A0A0LVE6_CUCSA (Ribosomal protein OS=Cucumis sativus GN=Csa_1G163140 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 7.0e-30
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 1

Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL SDALREAISSIF DS EKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD SH+EE
Sbjct: 62 MKICMLGDASHIEE 75

BLAST of Csa1G629190 vs. TrEMBL
Match: A0A059DAY2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03850 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-28
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 1

Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL SDALREAIS IF+D  EKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSDALREAISGIFSDCNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MK+C+LGD  HVEE
Sbjct: 62 MKVCMLGDAQHVEE 75

BLAST of Csa1G629190 vs. TrEMBL
Match: A0A059D9G4_EUCGR (Ribosomal protein OS=Eucalyptus grandis GN=EUGRSUZ_B03850 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-28
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 1

Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL SDALREAIS IF+D  EKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSDALREAISGIFSDCNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MK+C+LGD  HVEE
Sbjct: 62 MKVCMLGDAQHVEE 75

BLAST of Csa1G629190 vs. TAIR10
Match: AT2G27530.1 (AT2G27530.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 120.2 bits (300), Expect = 5.9e-28
Identity = 57/74 (77.03%), Postives = 62/74 (83.78%), Query Frame = 1

Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL S+A+REAI++I   S EKKR F ET+EL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSEAVREAITTIKGKSEEKKRNFVETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD  HVEE
Sbjct: 62 MKICMLGDAQHVEE 75

BLAST of Csa1G629190 vs. TAIR10
Match: AT1G08360.1 (AT1G08360.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 118.6 bits (296), Expect = 1.7e-27
Identity = 57/74 (77.03%), Postives = 61/74 (82.43%), Query Frame = 1

Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL S+A+REAI++I   S  KKR F ETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSEAVREAITTITGKSEAKKRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD  HVEE
Sbjct: 62 MKICMLGDAQHVEE 75

BLAST of Csa1G629190 vs. TAIR10
Match: AT5G22440.1 (AT5G22440.1 Ribosomal protein L1p/L10e family)

HSP 1 Score: 116.7 bits (291), Expect = 6.5e-27
Identity = 58/75 (77.33%), Postives = 61/75 (81.33%), Query Frame = 1

Query: 3  NKLHSDALREAISSIFADSGEKK-RKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRP 62
          +KL S+A+REAISSI     E K R FTETIEL IGLKNYDPQKDKRFSGSVKLPH+PRP
Sbjct: 2  SKLQSEAVREAISSIITHCKETKPRNFTETIELQIGLKNYDPQKDKRFSGSVKLPHVPRP 61

Query: 63 KMKICILGDVSHVEE 77
          KMKIC+LGD  HVEE
Sbjct: 62 KMKICMLGDAQHVEE 76

BLAST of Csa1G629190 vs. NCBI nr
Match: gi|700211466|gb|KGN66562.1| (hypothetical protein Csa_1G629190 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 1.1e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1

Query: 1  MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPR 60
          MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPR
Sbjct: 1  MYNKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPR 60

Query: 61 PKMKICILGDVSHVEEVT 79
          PKMKICILGDVSHVEEVT
Sbjct: 61 PKMKICILGDVSHVEEVT 78

BLAST of Csa1G629190 vs. NCBI nr
Match: gi|659117410|ref|XP_008458587.1| (PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 5.3e-31
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = 1

Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL SDALREAISSIFADSGEKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSDALREAISSIFADSGEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD SHVEE
Sbjct: 62 MKICMLGDASHVEE 75

BLAST of Csa1G629190 vs. NCBI nr
Match: gi|659071695|ref|XP_008461453.1| (PREDICTED: 60S ribosomal protein L10a-1 [Cucumis melo])

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-29
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 1

Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL SDALREAISSIF DS EKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD SH+EE
Sbjct: 62 MKICMLGDASHIEE 75

BLAST of Csa1G629190 vs. NCBI nr
Match: gi|449443440|ref|XP_004139485.1| (PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-29
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 1

Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL SDALREAISSIF DS EKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSDALREAISSIFTDSNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MKIC+LGD SH+EE
Sbjct: 62 MKICMLGDASHIEE 75

BLAST of Csa1G629190 vs. NCBI nr
Match: gi|629122880|gb|KCW87370.1| (hypothetical protein EUGRSUZ_B03850 [Eucalyptus grandis])

HSP 1 Score: 132.9 bits (333), Expect = 2.5e-28
Identity = 63/74 (85.14%), Postives = 67/74 (90.54%), Query Frame = 1

Query: 3  NKLHSDALREAISSIFADSGEKKRKFTETIELHIGLKNYDPQKDKRFSGSVKLPHIPRPK 62
          +KL SDALREAIS IF+D  EKKRKFTETIEL IGLKNYDPQKDKRFSGSVKLPHIPRPK
Sbjct: 2  SKLQSDALREAISGIFSDCNEKKRKFTETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPK 61

Query: 63 MKICILGDVSHVEE 77
          MK+C+LGD  HVEE
Sbjct: 62 MKVCMLGDAQHVEE 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
R10A_ORYSI3.6e-2775.6860S ribosomal protein L10a OS=Oryza sativa subsp. indica GN=RPL10A PE=3 SV=1[more]
R10A_ORYSJ3.6e-2775.6860S ribosomal protein L10a OS=Oryza sativa subsp. japonica GN=RPL10A PE=1 SV=1[more]
R10A2_ARATH1.0e-2677.0360S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=1 SV=1[more]
R10A1_ARATH3.0e-2677.0360S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=1 SV=1[more]
R10A3_ARATH1.2e-2577.3360S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0M0B3_CUCSA7.7e-37100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629190 PE=4 SV=1[more]
A0A0A0KEW8_CUCSA3.7e-3193.24Ribosomal protein OS=Cucumis sativus GN=Csa_6G152330 PE=3 SV=1[more]
A0A0A0LVE6_CUCSA7.0e-3089.19Ribosomal protein OS=Cucumis sativus GN=Csa_1G163140 PE=3 SV=1[more]
A0A059DAY2_EUCGR1.7e-2885.14Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03850 PE=4 SV=1[more]
A0A059D9G4_EUCGR1.7e-2885.14Ribosomal protein OS=Eucalyptus grandis GN=EUGRSUZ_B03850 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G27530.15.9e-2877.03 Ribosomal protein L1p/L10e family[more]
AT1G08360.11.7e-2777.03 Ribosomal protein L1p/L10e family[more]
AT5G22440.16.5e-2777.33 Ribosomal protein L1p/L10e family[more]
Match NameE-valueIdentityDescription
gi|700211466|gb|KGN66562.1|1.1e-36100.00hypothetical protein Csa_1G629190 [Cucumis sativus][more]
gi|659117410|ref|XP_008458587.1|5.3e-3193.24PREDICTED: 60S ribosomal protein L10a-1-like [Cucumis melo][more]
gi|659071695|ref|XP_008461453.1|1.0e-2989.19PREDICTED: 60S ribosomal protein L10a-1 [Cucumis melo][more]
gi|449443440|ref|XP_004139485.1|1.0e-2989.19PREDICTED: 60S ribosomal protein L10a-1 [Cucumis sativus][more]
gi|629122880|gb|KCW87370.1|2.5e-2885.14hypothetical protein EUGRSUZ_B03850 [Eucalyptus grandis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR016094Ribosomal protein L1, 2-layer alpha/beta-sandwich
IPR023674Ribosomal_L1-like
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G629190.1Csa1G629190.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016094Ribosomal protein L1, 2-layer alpha/beta-sandwichGENE3DG3DSA:3.30.190.20coord: 8..62
score: 7.1
IPR023674Ribosomal protein L1-likeunknownSSF56808Ribosomal protein L1coord: 2..76
score: 2.22
NoneNo IPR availablePANTHERPTHR23105RIBOSOMAL PROTEIN L7AE FAMILY MEMBERcoord: 4..76
score: 9.3
NoneNo IPR availablePANTHERPTHR23105:SF55SUBFAMILY NOT NAMEDcoord: 4..76
score: 9.3

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G629190CSPI01G31180Wild cucumber (PI 183967)cpicuB001
Csa1G629190Cucsa.355690Cucumber (Gy14) v1cgycuB500
Csa1G629190CsGy1G030370Cucumber (Gy14) v2cgybcuB002
The following gene(s) are paralogous to this gene:

None