CsGy1G030250 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G030250
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 28461216 .. 28463675 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAGAAATGACTGTTTGTATCTTTAATGCGAATATTGTCCAAGAATATAACCCACAATGAAAAAATACAAAAAATGTGATTAATTTTATTATGACTAGAATGACGAGGGTTGTGTTAAAACTACGATAGACATAGTTATGTTTAAAGTGAGGCATACTTTATAGAATGGGTTAGCATATAAATTATAGTGAGCCCTCCGAACAAAGAGACACTTTAGAAGGCATGATCATCAAAGATTGACTATAAGAAATGCAAGAATGGAGTCGGTGGTCATATTTCGTTAGGTTATGGGATTTTGATTCACCGGCGCAATGGCGATGGTTGAGAAAGATTGTGAGAGAGTGGAGTTGGGACCGAGTGGGGGCCTCCAATTCCCTCAGTGGAACCAATTATCGCCGGAAGTGGAAGCTGCAATGTCAAGCAAAAGTAAACCCCAAAACCCTCAAAAGCCAAACCCAAACCCAAAAGTCCCTTCAAAAATCCCTATCGCTCACCCACCCTCTTCCTTCTTCCTTTCACTAAAATTCTTCATAACTTGTTCCCACCAACAACCCCCCCAATCATCATCATCATCATCTTTCCTTTTCATTTTTCTCTCTATTTTCTCCCCTTTCATTCCACTCAAACCACCTCCTCCTCATGTAAGTCCCTCTTTATCTCTGTTTTTGTGAATCTTCTCGAGTTTTGGAGAATTTTTTGTGTGATTTCCAATGGGTTCTGTTTGTTTTCTTCAGGATGTTGAGTTTTTATTGGTTTTTCTTGTGATGAGTCCGTTTGTGATTGATCTATGGTTTTGTTGATTAGAAGGGAGGAGATTAAGGGGTGTTGTTCTTGGTGGCGAATTTGATTTTCTGATGGATTCCTTTGATGGGATTTCTGTGTTTGGGTATGATGTGAATTCCAGCAACATGGATGATTCTGATTCTTCTGGGCTTCTTGAAATTTATGTACATCATGCTAGAAACATTCACAATATATGCATATATGAAAATCAGGATGTTTATGCAAAATTTTCACTCACCTATAATCCAGACCAGACCTTGTCCACTAGAGTCATTAATGGAGGTGGGAAGAATCCTGATTTCAATGAAAATTTGAGGATGAAAGTTACACAGCCTGATTCTGTGCTCAAATGTGAGATTTGGATGCTTAGTAGGGCTAGAAACTATTTGGAAGATCAGCTTTTGGGATTTGCTTTGGTTCCACTATCACAAGTTGTTGGTAAGGGGAAAGTGACAGAGAATTATAGCCTCTCTTCTACAGATCTCTTCCATTCCCCGGCCGGAACGGTCCAGTTGAGTCTGTCTTTAGATAAATCATTGCCTGTTGATGAATTGAATTCGATATCAGATCTGCCGGTTAGTTCATCTATATCTTCGGAAGTTGTGTTGTTGGACAGGAAAATATCAGAAGTGATGTTGGATTCAGCTGAGTATTCTAGGATTGAGTTCCCTGATGTTAATGTGGTGATGGAGAATCAACAAATGGTGTCCGAGTACTTTTCTTTGGCCGGAAATGATTCTTGTACAAGGCCTAGAATTGCCACATTTCTCCGTCTTGGTGCGTCGCCTCCCCAACCACCCTATGACTTTGAAATGACTGCTAATTCAACTGAAGAACACCAACCGGGATCAATTTCCCCAAATGAGAGTAGCATTCAAAACTCCAGCTTTTTAAGCTCCACAACAACGAGTTTGAGTGATGATCGAAACTCGGTTGATTCTGCTGAAAAGAAGATCCGTTTCTCAGGTGAGTCATCAAATTATGTGAATGCTTCAGTCACTACTATTGAAGCCAGAAATCAAGTCTCTGGTCCTTGTCCAGATACTCCAACTTCACGGAAGAGTGGCCGGGCTGCAGAGGATAAGGAATCAAAATTTTCAAACAATAAAGATAAGATTAGCATAAAAAAGGAAGGAAGTATCCCGTCTGTTAAATTTGGTCAACTGTTTTCAGCTCCTTTAGGAAACATTAATGTTGATGCTGAGCAGTCTGCAATGCAGCAGCAAATTGTTGACATGTATATGAAGAGTATGCATCAGTTTACAGAGTCTTTGGCAAAGATGAAACTTCCGATGGATCTTGATAAGCCCGAGCATGAACACCGAGGTGTTGTGCTTCAAACCCATGATCCCAAACCAGAAATCAACCAAAAGAAAAAGGACGGTTCTCGGGTTTTTTATGGTAGCAGGGCATTTTTCTGATAATCATATAGGTGATGGAAATTCGACACTTATAGCAGGGTATGGAACTCATAACTTATCAGAACCTTTACAAACTTCCCTGGCCTCATAATCAAATGGTATTTATAACTAATCTTTAATACTATTTTTTGTTTTCTCTAGCTTGCAACTCTTCATAAAGAGTAGTTCCTAATATATCTATACTAAATCATCTGTCACAGTCATGGCAACATGACATTCTTTGTCTTGTGATTAGAGTTTCGTTTTTTTTTTTTT

mRNA sequence

GTAAGAAATGACTGTTTGTATCTTTAATGCGAATATTGTCCAAGAATATAACCCACAATGAAAAAATACAAAAAATGTGATTAATTTTATTATGACTAGAATGACGAGGGTTGTGTTAAAACTACGATAGACATAGTTATGTTTAAAGTGAGGCATACTTTATAGAATGGGTTAGCATATAAATTATAGTGAGCCCTCCGAACAAAGAGACACTTTAGAAGGCATGATCATCAAAGATTGACTATAAGAAATGCAAGAATGGAGTCGGTGGTCATATTTCGTTAGGTTATGGGATTTTGATTCACCGGCGCAATGGCGATGGTTGAGAAAGATTGTGAGAGAGTGGAGTTGGGACCGAGTGGGGGCCTCCAATTCCCTCAGTGGAACCAATTATCGCCGGAAGTGGAAGCTGCAATGTCAAGCAAAAGTAAACCCCAAAACCCTCAAAAGCCAAACCCAAACCCAAAAGTCCCTTCAAAAATCCCTATCGCTCACCCACCCTCTTCCTTCTTCCTTTCACTAAAATTCTTCATAACTTGTTCCCACCAACAACCCCCCCAATCATCATCATCATCATCTTTCCTTTTCATTTTTCTCTCTATTTTCTCCCCTTTCATTCCACTCAAACCACCTCCTCCTCATGATGTTGAGTTTTTATTGGTTTTTCTTGTGATGAGTCCGTTTGTGATTGATCTATGGTTTTGTTGATTAGAAGGGAGGAGATTAAGGGGTGTTGTTCTTGGTGGCGAATTTGATTTTCTGATGGATTCCTTTGATGGGATTTCTGTGTTTGGGTATGATGTGAATTCCAGCAACATGGATGATTCTGATTCTTCTGGGCTTCTTGAAATTTATGTACATCATGCTAGAAACATTCACAATATATGCATATATGAAAATCAGGATGTTTATGCAAAATTTTCACTCACCTATAATCCAGACCAGACCTTGTCCACTAGAGTCATTAATGGAGGTGGGAAGAATCCTGATTTCAATGAAAATTTGAGGATGAAAGTTACACAGCCTGATTCTGTGCTCAAATGTGAGATTTGGATGCTTAGTAGGGCTAGAAACTATTTGGAAGATCAGCTTTTGGGATTTGCTTTGGTTCCACTATCACAAGTTGTTGGTAAGGGGAAAGTGACAGAGAATTATAGCCTCTCTTCTACAGATCTCTTCCATTCCCCGGCCGGAACGGTCCAGTTGAGTCTGTCTTTAGATAAATCATTGCCTGTTGATGAATTGAATTCGATATCAGATCTGCCGGTTAGTTCATCTATATCTTCGGAAGTTGTGTTGTTGGACAGGAAAATATCAGAAGTGATGTTGGATTCAGCTGAGTATTCTAGGATTGAGTTCCCTGATGTTAATGTGGTGATGGAGAATCAACAAATGGTGTCCGAGTACTTTTCTTTGGCCGGAAATGATTCTTGTACAAGGCCTAGAATTGCCACATTTCTCCGTCTTGGTGCGTCGCCTCCCCAACCACCCTATGACTTTGAAATGACTGCTAATTCAACTGAAGAACACCAACCGGGATCAATTTCCCCAAATGAGAGTAGCATTCAAAACTCCAGCTTTTTAAGCTCCACAACAACGAGTTTGAGTGATGATCGAAACTCGGTTGATTCTGCTGAAAAGAAGATCCGTTTCTCAGGTGAGTCATCAAATTATGTGAATGCTTCAGTCACTACTATTGAAGCCAGAAATCAAGTCTCTGGTCCTTGTCCAGATACTCCAACTTCACGGAAGAGTGGCCGGGCTGCAGAGGATAAGGAATCAAAATTTTCAAACAATAAAGATAAGATTAGCATAAAAAAGGAAGGAAGTATCCCGTCTGTTAAATTTGGTCAACTGTTTTCAGCTCCTTTAGGAAACATTAATGTTGATGCTGAGCAGTCTGCAATGCAGCAGCAAATTGTTGACATGTATATGAAGAGTATGCATCAGTTTACAGAGTCTTTGGCAAAGATGAAACTTCCGATGGATCTTGATAAGCCCGAGCATGAACACCGAGGTGTTGTGCTTCAAACCCATGATCCCAAACCAGAAATCAACCAAAAGAAAAAGGACGGTTCTCGGGTTTTTTATGGTAGCAGGGCATTTTTCTGATAATCATATAGGTGATGGAAATTCGACACTTATAGCAGGGTATGGAACTCATAACTTATCAGAACCTTTACAAACTTCCCTGGCCTCATAATCAAATGGTATTTATAACTAATCTTTAATACTATTTTTTGTTTTCTCTAGCTTGCAACTCTTCATAAAGAGTAGTTCCTAATATATCTATACTAAATCATCTGTCACAGTCATGGCAACATGACATTCTTTGTCTTGTGATTAGAGTTTCGTTTTTTTTTTTTT

Coding sequence (CDS)

ATGGCGATGGTTGAGAAAGATTGTGAGAGAGTGGAGTTGGGACCGAGTGGGGGCCTCCAATTCCCTCAGTGGAACCAATTATCGCCGGAAGTGGAAGCTGCAATGTCAAGCAAAAGTAAACCCCAAAACCCTCAAAAGCCAAACCCAAACCCAAAAGTCCCTTCAAAAATCCCTATCGCTCACCCACCCTCTTCCTTCTTCCTTTCACTAAAATTCTTCATAACTTGTTCCCACCAACAACCCCCCCAATCATCATCATCATCATCTTTCCTTTTCATTTTTCTCTCTATTTTCTCCCCTTTCATTCCACTCAAACCACCTCCTCCTCATGATGTTGAGTTTTTATTGGTTTTTCTTGTGATGAGTCCGTTTGTGATTGATCTATGGTTTTGTTGA

Protein sequence

MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIAHPPSSFFLSLKFFITCSHQQPPQSSSSSSFLFIFLSIFSPFIPLKPPPPHDVEFLLVFLVMSPFVIDLWFC

Homology

[Close]

BLAST of CsGy1G030250 vs. NCBI nr
Match: KGN66543.1 (hypothetical protein Csa_1G629000 [Cucumis sativus])

HSP 1 Score: 179.5 bits (454), Expect = 7.5e-42
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIA 60
           MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIA
Sbjct: 1   MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIA 60

Query: 61  HPPSSFFLSLKFFIXXXXXXXXXXXXXXXXXXIFLSIFSPFIPLKPPPPH 111
           HPPSSFFLSLKFF XXXXXXXXXXXXXXXXXXIFLSIFSPFIPLKPPPPH
Sbjct: 61  HPPSSFFLSLKFFXXXXXXXXXXXXXXXXXXXIFLSIFSPFIPLKPPPPH 110

[Close]

BLAST of CsGy1G030250 vs. NCBI nr
Match: XP_022988095.1 (uncharacterized protein LOC111485445 isoform X1 [Cucurbita maxima])

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-05
Identity = 35/50 (70.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 14 GPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIAHPP 64
          G  G LQ  QWNQLSPEVE AMSSKSK   PQKPNP      KIPIAHPP
Sbjct: 14 GRVGRLQLLQWNQLSPEVEVAMSSKSK---PQKPNP------KIPIAHPP 54

[Close]

BLAST of CsGy1G030250 vs. TrEMBL
Match: tr|A0A0A0LXS2|A0A0A0LXS2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629000 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 4.9e-42
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIA 60
           MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIA
Sbjct: 1   MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPKVPSKIPIA 60

Query: 61  HPPSSFFLSLKFFIXXXXXXXXXXXXXXXXXXIFLSIFSPFIPLKPPPPH 111
           HPPSSFFLSLKFF XXXXXXXXXXXXXXXXXXIFLSIFSPFIPLKPPPPH
Sbjct: 61  HPPSSFFLSLKFFXXXXXXXXXXXXXXXXXXXIFLSIFSPFIPLKPPPPH 110

The following BLAST results are available for this feature:

BLAST of CsGy1G030250 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66543.1	7.5e-42	99.09	hypothetical protein Csa_1G629000 [Cucumis sativus]	[more]
XP_022988095.1	1.9e-05	70.00	uncharacterized protein LOC111485445 isoform X1 [Cucurbita maxima]	[more]

BLAST of CsGy1G030250 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G030250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G030250 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXS2\|A0A0A0LXS2_CUCSA	4.9e-42	99.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629000 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G030250.1	CsGy1G030250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G030250	Csa1G629000	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G030250	MELO3C015122	Melon (DHL92) v3.5.1	cgybmeB038
CsGy1G030250	CSPI01G30980	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G030250	CsaV3_1G043370	Cucumber (Chinese Long) v3	cgybcucB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G030250	Cucurbita moschata (Rifu)	cgybcmoB013
CsGy1G030250	Cucurbita moschata (Rifu)	cgybcmoB027
CsGy1G030250	Cucurbita moschata (Rifu)	cgybcmoB110
CsGy1G030250	Cucurbita pepo (Zucchini)	cgybcpeB039
CsGy1G030250	Cucurbita pepo (Zucchini)	cgybcpeB125
CsGy1G030250	Cucurbita pepo (Zucchini)	cgybcpeB137
CsGy1G030250	Bottle gourd (USVL1VR-Ls)	cgyblsiB055
CsGy1G030250	Melon (DHL92) v3.6.1	cgybmedB032
CsGy1G030250	Watermelon (Charleston Gray)	cgybwcgB043
CsGy1G030250	Watermelon (97103) v1	cgybwmB024
CsGy1G030250	Silver-seed gourd	carcgybB0878
CsGy1G030250	Silver-seed gourd	carcgybB0905
CsGy1G030250	Silver-seed gourd	carcgybB0955
CsGy1G030250	Watermelon (97103) v2	cgybwmbB041
CsGy1G030250	Wax gourd	cgybwgoB094
CsGy1G030250	Cucurbita maxima (Rimu)	cgybcmaB013
CsGy1G030250	Cucurbita maxima (Rimu)	cgybcmaB027
CsGy1G030250	Cucurbita maxima (Rimu)	cgybcmaB120