MELO3C015122 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015122
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Coenzyme PQQ synthesis protein B
Location	chr2 : 7023510 .. 7023731 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGTTGAGAAAGATTTTGAGAGAGTGGAGTTGGGACCGAGTGGGGGCCTCCAATTTCCTCAGTGGAACCAATTATCGCCGGAAGTGGAAGCTGCAATGTCAAGCAAAAGTAAACCCAAAACCCTCAAAAGCCAAACTCAAACCCAAAAGTCCCTTCAAAAATCTTTATCGCTCACCCACTCTCTTCCTTCTTCCTTTCAGCAAAATTCTTCATAA

mRNA sequence

ATGGCGATGGTTGAGAAAGATTTTGAGAGAGTGGAGTTGGGACCGAGTGGGGGCCTCCAATTTCCTCAGTGGAACCAATTATCGCCGGAAGTGGAAGCTGCAATGTCAAGCAAAAGTAAACCCAAAACCCTCAAAAGCCAAACTCAAACCCAAAAGTCCCTTCAAAAATCTTTATCGCTCACCCACTCTCTTCCTTCTTCCTTTCAGCAAAATTCTTCATAA

Coding sequence (CDS)

ATGGCGATGGTTGAGAAAGATTTTGAGAGAGTGGAGTTGGGACCGAGTGGGGGCCTCCAATTTCCTCAGTGGAACCAATTATCGCCGGAAGTGGAAGCTGCAATGTCAAGCAAAAGTAAACCCAAAACCCTCAAAAGCCAAACTCAAACCCAAAAGTCCCTTCAAAAATCTTTATCGCTCACCCACTCTCTTCCTTCTTCCTTTCAGCAAAATTCTTCATAA

Protein sequence

MAMVEKDFERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPKTLKSQTQTQKSLQKSLSLTHSLPSSFQQNSS*

Homology

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BLAST of MELO3C015122 vs. TrEMBL
Match: A0A0A0LXS2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629000 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-14
Identity = 46/68 (67.65%), Postives = 51/68 (75.00%), Query Frame = 1


Query: 1  MAMVEKDFERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPKTLKSQTQTQKSLQKSLSL 60
          MAMVEKD ERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKP+  +      K +   + +
Sbjct: 1  MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPK-VPSKIPI 60

Query: 61 THSLPSSF 69
           H  PSSF
Sbjct: 61 AHP-PSSF 66

[Close]

BLAST of MELO3C015122 vs. NCBI nr
Match: gi|700211447|gb|KGN66543.1| (hypothetical protein Csa_1G629000 [Cucumis sativus])

HSP 1 Score: 86.3 bits (212), Expect = 2.5e-14
Identity = 46/68 (67.65%), Postives = 51/68 (75.00%), Query Frame = 1


Query: 1  MAMVEKDFERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPKTLKSQTQTQKSLQKSLSL 60
          MAMVEKD ERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKP+  +      K +   + +
Sbjct: 1  MAMVEKDCERVELGPSGGLQFPQWNQLSPEVEAAMSSKSKPQNPQKPNPNPK-VPSKIPI 60

Query: 61 THSLPSSF 69
           H  PSSF
Sbjct: 61 AHP-PSSF 66

The following BLAST results are available for this feature:

BLAST of MELO3C015122 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXS2_CUCSA	1.7e-14	67.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G629000 PE=4 SV=1	[more]

BLAST of MELO3C015122 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700211447\|gb\|KGN66543.1\|	2.5e-14	67.65	hypothetical protein Csa_1G629000 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015122T1	MELO3C015122T1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015122	Csa1G629000	Cucumber (Chinese Long) v2	cumeB041
MELO3C015122	CSPI01G30980	Wild cucumber (PI 183967)	cpimeB042
MELO3C015122	CsGy1G030250	Cucumber (Gy14) v2	cgybmeB038
MELO3C015122	CsaV3_1G043370	Cucumber (Chinese Long) v3	cucmeB042

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015122	Silver-seed gourd	carmeB0876
MELO3C015122	Silver-seed gourd	carmeB0947
MELO3C015122	Watermelon (97103) v2	mewmbB249
MELO3C015122	Wax gourd	mewgoB305
MELO3C015122	Cucurbita moschata (Rifu)	cmomeB097
MELO3C015122	Cucurbita maxima (Rimu)	cmameB066
MELO3C015122	Cucurbita maxima (Rimu)	cmameB104
MELO3C015122	Cucurbita moschata (Rifu)	cmomeB058
MELO3C015122	Watermelon (Charleston Gray)	mewcgB245
MELO3C015122	Watermelon (97103) v1	mewmB273
MELO3C015122	Cucurbita pepo (Zucchini)	cpemeB329
MELO3C015122	Cucurbita pepo (Zucchini)	cpemeB620
MELO3C015122	Bottle gourd (USVL1VR-Ls)	lsimeB396