CsGy1G029630 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G029630
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 27712859 .. 27713256 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCTTCAAATGGAGCTGTAAGCCATCTAAGAAGCAACATCACAATCAATTAACTCAAATTCATGAATCACTAACAATTTAATCTCTAATTCATCTCCCATATGCTTGTATAAATATTGGTTCTCTCACTCCTATCTCCGGCAGCAATTTGATATATTACCTTCAATTCGAGTTTTCTGTGCAGACATCAATGGCAGGATTCAGCATTCACAGGGCGAAGTGGCTGTTTGTGGTGACTCTGGTGCTCCTGCTTGCAGTGGCCAGAGCTCAAGACGGTGCAGGACTTGCACCATTACCTGCTATGGATGCTGGGACTGGATTTCAGGTGACGTTTTCAAATGGTGGAATTCTGCTATCAATGTTCATCTCCCTCGTTGTGCTTCTCTTGCATTAG

mRNA sequence

ATGTCATCTTCAAATGGAGCTACATCAATGGCAGGATTCAGCATTCACAGGGCGAAGTGGCTGTTTGTGGTGACTCTGGTGCTCCTGCTTGCAGTGGCCAGAGCTCAAGACGGTGCAGGACTTGCACCATTACCTGCTATGGATGCTGGGACTGGATTTCAGGTGACGTTTTCAAATGGTGGAATTCTGCTATCAATGTTCATCTCCCTCGTTGTGCTTCTCTTGCATTAG

Coding sequence (CDS)

ATGTCATCTTCAAATGGAGCTACATCAATGGCAGGATTCAGCATTCACAGGGCGAAGTGGCTGTTTGTGGTGACTCTGGTGCTCCTGCTTGCAGTGGCCAGAGCTCAAGACGGTGCAGGACTTGCACCATTACCTGCTATGGATGCTGGGACTGGATTTCAGGTGACGTTTTCAAATGGTGGAATTCTGCTATCAATGTTCATCTCCCTCGTTGTGCTTCTCTTGCATTAG

Protein sequence

MSSSNGATSMAGFSIHRAKWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFISLVVLLLH
Homology
[Close]
BLAST of CsGy1G029630 vs. NCBI nr
Match: KGN66478.1 (hypothetical protein Csa_1G613500 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 4.3e-26
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 10 MAGFSIHRAKWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIS 69
          MAGFSIHRAKWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIS
Sbjct: 1  MAGFSIHRAKWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIS 60

Query: 70 LVVLLLH 77
          LVVLLLH
Sbjct: 61 LVVLLLH 67

[Close]
BLAST of CsGy1G029630 vs. TrEMBL
Match: tr|A0A0A0LXI4|A0A0A0LXI4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613500 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.9e-26
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 10 MAGFSIHRAKWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIS 69
          MAGFSIHRAKWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIS
Sbjct: 1  MAGFSIHRAKWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIS 60

Query: 70 LVVLLLH 77
          LVVLLLH
Sbjct: 61 LVVLLLH 67

The following BLAST results are available for this feature:
BLAST of CsGy1G029630 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66478.14.3e-26100.00hypothetical protein Csa_1G613500 [Cucumis sativus][more]
BLAST of CsGy1G029630 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G029630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G029630 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXI4|A0A0A0LXI4_CUCSA2.9e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613500 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G029630.1CsGy1G029630.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33659FAMILY NOT NAMEDcoord: 10..76

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G029630Cla006293Watermelon (97103) v1cgybwmB022
CsGy1G029630Csa1G613500Cucumber (Chinese Long) v2cgybcuB002
CsGy1G029630MELO3C015203Melon (DHL92) v3.5.1cgybmeB038
CsGy1G029630ClCG03G013330Watermelon (Charleston Gray)cgybwcgB043
CsGy1G029630CSPI01G30280Wild cucumber (PI 183967)cgybcpiB002
CsGy1G029630CmoCh10G009820Cucurbita moschata (Rifu)cgybcmoB013
CsGy1G029630Lsi06G005180Bottle gourd (USVL1VR-Ls)cgyblsiB055
CsGy1G029630Cp4.1LG18g01580Cucurbita pepo (Zucchini)cgybcpeB039
CsGy1G029630MELO3C015203.2Melon (DHL92) v3.6.1cgybmedB032
CsGy1G029630CsaV3_1G042710Cucumber (Chinese Long) v3cgybcucB001
CsGy1G029630Cla97C03G063540Watermelon (97103) v2cgybwmbB041
CsGy1G029630Bhi02G001346Wax gourdcgybwgoB081
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G029630Cucumber (Gy14) v2cgybcgybB042
CsGy1G029630Cucurbita maxima (Rimu)cgybcmaB013
CsGy1G029630Cucurbita maxima (Rimu)cgybcmaB027
CsGy1G029630Cucurbita maxima (Rimu)cgybcmaB116
CsGy1G029630Cucurbita maxima (Rimu)cgybcmaB144
CsGy1G029630Cucurbita moschata (Rifu)cgybcmoB027
CsGy1G029630Cucurbita moschata (Rifu)cgybcmoB108
CsGy1G029630Cucurbita moschata (Rifu)cgybcmoB110
CsGy1G029630Cucurbita moschata (Rifu)cgybcmoB135
CsGy1G029630Cucurbita pepo (Zucchini)cgybcpeB037
CsGy1G029630Cucurbita pepo (Zucchini)cgybcpeB038
CsGy1G029630Cucurbita pepo (Zucchini)cgybcpeB125
CsGy1G029630Cucurbita pepo (Zucchini)cgybcpeB137
CsGy1G029630Cucumber (Chinese Long) v2cgybcuB049
CsGy1G029630Bottle gourd (USVL1VR-Ls)cgyblsiB004
CsGy1G029630Bottle gourd (USVL1VR-Ls)cgyblsiB037
CsGy1G029630Melon (DHL92) v3.5.1cgybmeB037
CsGy1G029630Melon (DHL92) v3.5.1cgybmeB064
CsGy1G029630Melon (DHL92) v3.6.1cgybmedB060
CsGy1G029630Watermelon (97103) v1cgybwmB073
CsGy1G029630Wild cucumber (PI 183967)cgybcpiB047
CsGy1G029630Silver-seed gourdcarcgybB0186
CsGy1G029630Silver-seed gourdcarcgybB0475
CsGy1G029630Silver-seed gourdcarcgybB0527
CsGy1G029630Silver-seed gourdcarcgybB0905
CsGy1G029630Cucumber (Chinese Long) v3cgybcucB054
CsGy1G029630Watermelon (97103) v2cgybwmbB029
CsGy1G029630Wax gourdcgybwgoB071
CsGy1G029630Wax gourdcgybwgoB094