MELO3C015203.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C015203.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	No apical meristem (NAM) protein
Location	chr02 : 6116688 .. 6117136 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAGCAATTTGATATTACCTTCAATTCGAGTTTTCTGTGCAGACATTAATGGCAGGATTCAGCATCCACAGGGCGATGTGGCTGTTTGTGGTGACTCTGGTGCTCCTGCTCGCAGTGGCCAGAGCTCAAGACGGTGCAGGACTTGCACCATTACCTGCTATGGATGCTGGGACTGGATTTCAGGTGACATTTTCGAATGGTGGAATTCTCCTATCAATGTTCATCTACCTCGTTGCGCTTCTCTGGCATTAGATACAAGATCTTCCTGCTTTCTCATTGATCAGTATGATTGGTTTTTGATGTTTTGTATGTATGTGTTATTGTCATTGTACTGGCGCTATTTTTTTGTTTATTTTTGGCCATATATTTGGGGCATTATTCTACATGCTTTTGGTCTGTAACCTCAGGGGTATTATCAATAAAGAATTGTTCTTGACATTGAGTTTCT

mRNA sequence

AGCAGCAATTTGATATTACCTTCAATTCGAGTTTTCTGTGCAGACATTAATGGCAGGATTCAGCATCCACAGGGCGATGTGGCTGTTTGTGGTGACTCTGGTGCTCCTGCTCGCAGTGGCCAGAGCTCAAGACGGTGCAGGACTTGCACCATTACCTGCTATGGATGCTGGGACTGGATTTCAGGTGACATTTTCGAATGGTGGAATTCTCCTATCAATGTTCATCTACCTCGTTGCGCTTCTCTGGCATTAGATACAAGATCTTCCTGCTTTCTCATTGATCAGTATGATTGGTTTTTGATGTTTTGTATGTATGTGTTATTGTCATTGTACTGGCGCTATTTTTTTGTTTATTTTTGGCCATATATTTGGGGCATTATTCTACATGCTTTTGGTCTGTAACCTCAGGGGTATTATCAATAAAGAATTGTTCTTGACATTGAGTTTCT

Coding sequence (CDS)

ATGGCAGGATTCAGCATCCACAGGGCGATGTGGCTGTTTGTGGTGACTCTGGTGCTCCTGCTCGCAGTGGCCAGAGCTCAAGACGGTGCAGGACTTGCACCATTACCTGCTATGGATGCTGGGACTGGATTTCAGGTGACATTTTCGAATGGTGGAATTCTCCTATCAATGTTCATCTACCTCGTTGCGCTTCTCTGGCATTAG

Protein sequence

MAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIYLVALLWH

Homology

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BLAST of MELO3C015203.2 vs. NCBI nr
Match: KGN66478.1 (hypothetical protein Csa_1G613500 [Cucumis sativus])

HSP 1 Score: 118.6 bits (296), Expect = 8.0e-24
Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIY 60
          MAGFSIHRA WLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFI 
Sbjct: 1  MAGFSIHRAKWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIS 60

Query: 61 LVALLWH 68
          LV LL H
Sbjct: 61 LVVLLLH 67

[Close]

BLAST of MELO3C015203.2 vs. TrEMBL
Match: tr|A0A0A0LXI4|A0A0A0LXI4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613500 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.3e-24
Identity = 63/67 (94.03%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 1  MAGFSIHRAMWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIY 60
          MAGFSIHRA WLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFI 
Sbjct: 1  MAGFSIHRAKWLFVVTLVLLLAVARAQDGAGLAPLPAMDAGTGFQVTFSNGGILLSMFIS 60

Query: 61 LVALLWH 68
          LV LL H
Sbjct: 61 LVVLLLH 67

The following BLAST results are available for this feature:

BLAST of MELO3C015203.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN66478.1	8.0e-24	94.03	hypothetical protein Csa_1G613500 [Cucumis sativus]	[more]

BLAST of MELO3C015203.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C015203.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C015203.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LXI4\|A0A0A0LXI4_CUCSA	5.3e-24	94.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G613500 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015203.2.1	MELO3C015203.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33659	FAMILY NOT NAMED	coord: 1..67

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C015203.2	Csa1G613500	Cucumber (Chinese Long) v2	cumedB033
MELO3C015203.2	CSPI01G30280	Wild cucumber (PI 183967)	cpimedB036
MELO3C015203.2	CmoCh10G009820	Cucurbita moschata (Rifu)	cmomedB061
MELO3C015203.2	Lsi06G005180	Bottle gourd (USVL1VR-Ls)	lsimedB418
MELO3C015203.2	Cp4.1LG18g01580	Cucurbita pepo (Zucchini)	cpemedB387
MELO3C015203.2	CsGy1G029630	Cucumber (Gy14) v2	cgybmedB032
MELO3C015203.2	Cla006293	Watermelon (97103) v1	medwmB262
MELO3C015203.2	ClCG03G013330	Watermelon (Charleston Gray)	medwcgB237
MELO3C015203.2	Cla97C03G063540	Watermelon (97103) v2	medwmbB235
MELO3C015203.2	Bhi02G001346	Wax gourd	medwgoB294
MELO3C015203.2	CsaV3_1G042710	Cucumber (Chinese Long) v3	cucmedB039

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C015203.2	Cucumber (Gy14) v2	cgybmedB480
MELO3C015203.2	Cucumber (Gy14) v1	cgymedB235
MELO3C015203.2	Cucurbita maxima (Rimu)	cmamedB069
MELO3C015203.2	Cucurbita maxima (Rimu)	cmamedB111
MELO3C015203.2	Cucurbita moschata (Rifu)	cmomedB104
MELO3C015203.2	Cucurbita pepo (Zucchini)	cpemedB733
MELO3C015203.2	Wild cucumber (PI 183967)	cpimedB539
MELO3C015203.2	Cucumber (Chinese Long) v2	cumedB525
MELO3C015203.2	Melon (DHL92) v3.6.1	medmedB079
MELO3C015203.2	Bottle gourd (USVL1VR-Ls)	lsimedB218
MELO3C015203.2	Silver-seed gourd	carmedB0182
MELO3C015203.2	Silver-seed gourd	carmedB0475
MELO3C015203.2	Wax gourd	medwgoB287