CsGy1G029520 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G029520
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptionpentatricopeptide repeat-containing protein At5g66520-like
LocationChr1 : 27589353 .. 27590746 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACGATGCGACTTTTTACTCAGTTCCTGCAAATCATTTCGCCAAATCAAACAAGTTCACGCCCGATTGATCACCACCGGCCTTATTCTACACCCAATCCCCACTAATAAACTCCTTAAACAACTTTCCTCAATATTCGCTCCAATTTCCTATGCCCACATGGTGTTCGACCATTTTCCTCAACCAGATCTCTTCCTCTACAACACCATTATCAAGGTCCTGGCATTTTCAACCACTTCTTCTGCTGATTCTTTCACGAAGTTTCGTTCTTTAATCCGCGAAGAAAGGTTAGTGCCCAATCAGTATTCGTTTGCATTTGCCTTCAAGGGCTGTGGCAGTGGTGTTGGGGTTCTGGAAGGGGAGCAAGTTCGTGTTCATGCTATTAAACTTGGTCTGGAAAACAATCTGTTTGTGACGAATGCGTTGATTGGGATGTATGTGAATTTGGATTTTGTTGTGGATGCTAGAAAGGTGTTTGATTGGAGTCCCAATAGAGATATGTATTCCTGGAATATCATGCTTAGTGGGTATGCGAGATTGGGGAAAATGGATGAAGCTCGGCAACTGTTTGATGAAATGCCTGAAAAAGATGTTGTGTCGTGGACAACAATGATTTCTGGTTGTCTTCAGGTAATTACATGAAAAACTGAAGTTCTTTCATTTTTTTGTTTCAAAATTTTGGGCTCAATTATAAGTTCAGGCTTTAAACTTCGAAGTTGTGTTTTTGTAACAATGTCCGTTTATCTTTTATTTAGTCTTCACTCTTAAATTTTTCTAATCAGCCTTTCAACTGTCTATTTTTTGTCAATGATTGGGAAGTTAGTGGAAAAAATTGTAGGTCAACACCTTGTTTGGTGACCGTTTCGATTTTAGTTATTGGTTTTTGAAAGTTAGGCTTATTTTCTCTCAAATTAAGCTAAGATCTTGTTTGAGAAATATTTCAATTTTGGTTATTGGTTCTTGAAAGTTAAGCAAATGTTTTGGCAAATTCCAAAAATAAGAACTAAGTTTTAAAAACCGACTATTTTTAGTTTAAAAAATTGGCTTGGTTTATGAAAACATTGGTACAAGTTAATTACTTAGCAAAGAAATTTAAAGATGAAATGAGTATAACCAAATGGTTAACAAACGGGGTGCAAGGGATAAAGAGACAATCTTTGTAGAAGCTTAAAAACCTTAGTAGAAGCTATAATTTTTCCAAAAATTTTAACGTTATATGATTCTAGTTACTTCTTGACACAGTAATACTGTGCTGGTATACGCTATGCCATAGTGAGAAGCCATATTTACTTTCTTTGCGAGAGAGAAGTATTTTTCTGTCTCGTTTCCTCAAACTTGCCCCTGCATCCATGGGGAAATCAAATGGTAAGCAATCACTGAGTTTATTATGA

mRNA sequence

ATGGTACGATGCGACTTTTTACTCAGTTCCTGCAAATCATTTCGCCAAATCAAACAAGTTCACGCCCGATTGATCACCACCGGCCTTATTCTACACCCAATCCCCACTAATAAACTCCTTAAACAACTTTCCTCAATATTCGCTCCAATTTCCTATGCCCACATGGTGTTCGACCATTTTCCTCAACCAGATCTCTTCCTCTACAACACCATTATCAAGGTCCTGGCATTTTCAACCACTTCTTCTGCTGATTCTTTCACGAAGTTTCGTTCTTTAATCCGCGAAGAAAGGTTAGTGCCCAATCAGTATTCGTTTGCATTTGCCTTCAAGGGCTGTGGCAGTGGTGTTGGGGTTCTGGAAGGGGAGCAAGTTCGTGTTCATGCTATTAAACTTGGTCTGGAAAACAATCTGTTTGTGACGAATGCGTTGATTGGGATGTATTTACTTCTTGACACAGTAATACTGTGCTGGTATACGCTATGCCATAGTGAGAAGCCATATTTACTTTCTTTGCGAGAGAGAAGTATTTTTCTGTCTCGTTTCCTCAAACTTGCCCCTGCATCCATGGGGAAATCAAATGGTAAGCAATCACTGAGTTTATTATGA

Coding sequence (CDS)

ATGGTACGATGCGACTTTTTACTCAGTTCCTGCAAATCATTTCGCCAAATCAAACAAGTTCACGCCCGATTGATCACCACCGGCCTTATTCTACACCCAATCCCCACTAATAAACTCCTTAAACAACTTTCCTCAATATTCGCTCCAATTTCCTATGCCCACATGGTGTTCGACCATTTTCCTCAACCAGATCTCTTCCTCTACAACACCATTATCAAGGTCCTGGCATTTTCAACCACTTCTTCTGCTGATTCTTTCACGAAGTTTCGTTCTTTAATCCGCGAAGAAAGGTTAGTGCCCAATCAGTATTCGTTTGCATTTGCCTTCAAGGGCTGTGGCAGTGGTGTTGGGGTTCTGGAAGGGGAGCAAGTTCGTGTTCATGCTATTAAACTTGGTCTGGAAAACAATCTGTTTGTGACGAATGCGTTGATTGGGATGTATTTACTTCTTGACACAGTAATACTGTGCTGGTATACGCTATGCCATAGTGAGAAGCCATATTTACTTTCTTTGCGAGAGAGAAGTATTTTTCTGTCTCGTTTCCTCAAACTTGCCCCTGCATCCATGGGGAAATCAAATGGTAAGCAATCACTGAGTTTATTATGA

Protein sequence

MVRCDFLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYLLLDTVILCWYTLCHSEKPYLLSLRERSIFLSRFLKLAPASMGKSNGKQSLSLL
Homology
[Close]
BLAST of CsGy1G029520 vs. NCBI nr
Match: XP_004139110.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Cucumis sativus] >KGN66465.1 hypothetical protein Csa_1G612890 [Cucumis sativus])

HSP 1 Score: 274.2 bits (700), Expect = 3.4e-70
Identity = 150/154 (97.40%), Postives = 152/154 (98.70%), Query Frame = 0 

Query: 1   MVRCDFLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHF 60
           MVRCDFLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHF
Sbjct: 1   MVRCDFLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHF 60

Query: 61  PQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLE 120
           PQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLE
Sbjct: 61  PQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLE 120

Query: 121 GEQVRVHAIKLGLENNLFVTNALIGMYLLLDTVI 155
           GEQVRVHAIKLGLENNLFVTNALIGMY+ LD V+
Sbjct: 121 GEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVV 154

[Close]
BLAST of CsGy1G029520 vs. NCBI nr
Match: XP_008450449.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Cucumis melo])

HSP 1 Score: 267.7 bits (683), Expect = 3.2e-68
Identity = 136/154 (88.31%), Postives = 142/154 (92.21%), Query Frame = 0 

Query: 1   MVRCDFLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHF 60
           MVRCDFLL SCKSFRQIKQVHA+LIT+GLILHPIPTNKLLKQLSSIFAPISYAHMVFDHF
Sbjct: 1   MVRCDFLLGSCKSFRQIKQVHAQLITSGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHF 60

Query: 61  PQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLE 120
           PQPDLFLYNTIIKVLAFSTTSSADSFT+FRSLIREERLVPNQYSFA         VGVLE
Sbjct: 61  PQPDLFLYNTIIKVLAFSTTSSADSFTRFRSLIREERLVPNQYSFAFAFKACGSGVGVLE 120

Query: 121 GEQVRVHAIKLGLENNLFVTNALIGMYLLLDTVI 155
           GEQVRVHA+KLGLENNLFVTNALIGMY+ LD V+
Sbjct: 121 GEQVRVHALKLGLENNLFVTNALIGMYVNLDFVV 154

[Close]
BLAST of CsGy1G029520 vs. NCBI nr
Match: XP_023529533.1 (pentatricopeptide repeat-containing protein At3g62890-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.2 bits (539), Expect = 1.6e-51
Identity = 114/149 (76.51%), Postives = 120/149 (80.54%), Query Frame = 0 

Query: 6   FLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLS-SIFAPISYAHMVFDHFPQPD 65
           FLL  CKS  QIKQ HA+LITTGL+LHPI TNKLLK LS S FA ISYA MVFDHFPQPD
Sbjct: 12  FLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYAQMVFDHFPQPD 71

Query: 66  LFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLEGEQV 125
           LFLYNTIIK  A S TSSADSFT+FRSLIR+ RLVPNQYSFA         VGVLEGEQV
Sbjct: 72  LFLYNTIIKAHAISATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCGNAVGVLEGEQV 131

Query: 126 RVHAIKLGLENNLFVTNALIGMYLLLDTV 154
           RVHA+KLGLENNLFV NALIGMY+ L  V
Sbjct: 132 RVHAVKLGLENNLFVMNALIGMYVNLGFV 160

[Close]
BLAST of CsGy1G029520 vs. NCBI nr
Match: XP_022927711.1 (pentatricopeptide repeat-containing protein At3g62890-like [Cucurbita moschata] >XP_022927721.1 pentatricopeptide repeat-containing protein At3g62890-like [Cucurbita moschata])

HSP 1 Score: 211.5 bits (537), Expect = 2.7e-51
Identity = 113/149 (75.84%), Postives = 119/149 (79.87%), Query Frame = 0 

Query: 6   FLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLS-SIFAPISYAHMVFDHFPQPD 65
           FLL  CKS  QIKQ HA+LITTGL+LHPI TNKLLK LS S FA ISYA MVFDHFPQPD
Sbjct: 12  FLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFASISYAQMVFDHFPQPD 71

Query: 66  LFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLEGEQV 125
           LFLYNTIIK  A S TSSADSFT+FRSLIR+ RLVPNQYSFA         VGVLEGEQV
Sbjct: 72  LFLYNTIIKAHALSATSSADSFTRFRSLIRDGRLVPNQYSFAFAFKGCGNAVGVLEGEQV 131

Query: 126 RVHAIKLGLENNLFVTNALIGMYLLLDTV 154
           R HA+KLGLENNLFV NALIGMY+ L  V
Sbjct: 132 RAHAVKLGLENNLFVMNALIGMYVNLGVV 160

[Close]
BLAST of CsGy1G029520 vs. NCBI nr
Match: XP_022967088.1 (pentatricopeptide repeat-containing protein At5g66520-like [Cucurbita maxima])

HSP 1 Score: 208.4 bits (529), Expect = 2.3e-50
Identity = 112/149 (75.17%), Postives = 118/149 (79.19%), Query Frame = 0 

Query: 6   FLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLS-SIFAPISYAHMVFDHFPQPD 65
           FLL  CKS  QIKQ HA+LITTGL+LHPI TNKLLK LS S F  ISYA MVFDHFPQPD
Sbjct: 12  FLLDFCKSIHQIKQTHAQLITTGLVLHPIATNKLLKLLSFSRFGSISYAQMVFDHFPQPD 71

Query: 66  LFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLEGEQV 125
           LFLYNTIIK  A S TSSADSFT+FRSLIR+  LVPNQYSFA         VGVLEGEQV
Sbjct: 72  LFLYNTIIKAHAISATSSADSFTRFRSLIRDGSLVPNQYSFAFAFKGCGNAVGVLEGEQV 131

Query: 126 RVHAIKLGLENNLFVTNALIGMYLLLDTV 154
           RVHA+KLGLENNLFV NALIGMY+ L  V
Sbjct: 132 RVHAVKLGLENNLFVMNALIGMYVNLGFV 160

[Close]
BLAST of CsGy1G029520 vs. TAIR10
Match: AT1G74630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-14
Identity = 47/145 (32.41%), Postives = 76/145 (52.41%), Query Frame = 0 

Query: 4   CDFLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLS-SIFAPISYAHMVFDHFPQ 63
           C  LL+SCK+ R + Q+H   I  G+      T KL+   + SI   + YA  +   FP+
Sbjct: 8   CLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPE 67

Query: 64  PDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLEGE 123
           PD F++NT+++  +  +    +S   F  ++R+  + P+ +SFA           +  G 
Sbjct: 68  PDAFMFNTLVRGYS-ESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGF 127

Query: 124 QVRVHAIKLGLENNLFVTNALIGMY 148
           Q+   A+K GLE++LFV   LIGMY
Sbjct: 128 QMHCQALKHGLESHLFVGTTLIGMY 151

[Close]
BLAST of CsGy1G029520 vs. TAIR10
Match: AT5G43790.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-12
Identity = 47/152 (30.92%), Postives = 80/152 (52.63%), Query Frame = 0 

Query: 3   RCDFLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQ 62
           RC  L+S CKS + +KQ+HA++IT GL  H  P +KLL   S++   +SYA  +    P 
Sbjct: 11  RCLNLISKCKSLQNLKQIHAQIITIGLSHHTYPLSKLLHLSSTVC--LSYALSILRQIPN 70

Query: 63  PDLFLYNTIIK--VLAFSTTSSADSFTKFRSLI--REERLVPNQYSF-AXXXXXXXXXVG 122
           P +FLYNT+I   V   ++T +  +F+ +  ++  R   + PN++++ +           
Sbjct: 71  PSVFLYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFDAQW 130

Query: 123 VLEGEQVRVHAIKL--GLENNLFVTNALIGMY 148
              G  +  H +K    + ++ FV  AL+G Y
Sbjct: 131 HRHGRALHAHVLKFLEPVNHDRFVQAALVGFY 160

[Close]
BLAST of CsGy1G029520 vs. TAIR10
Match: AT5G66520.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 4.0e-12
Identity = 48/149 (32.21%), Postives = 71/149 (47.65%), Query Frame = 0 

Query: 8   LSSCKSFRQIKQVHARLITTGLILHPIPTNKLL----KQLSSIFAPISYAHMVFDHFPQP 67
           L  C    ++KQ+HAR++ TGL+       K L       SS F P  YA +VFD F +P
Sbjct: 21  LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLP--YAQIVFDGFDRP 80

Query: 68  DLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLV-----PNQYSFAXXXXXXXXXVGV 127
           D FL+N +I+   FS +   +     RSL+  +R++      N Y+F             
Sbjct: 81  DTFLWNLMIR--GFSCSDEPE-----RSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAF 140

Query: 128 LEGEQVRVHAIKLGLENNLFVTNALIGMY 148
            E  Q+     KLG EN+++  N+LI  Y
Sbjct: 141 EETTQIHAQITKLGYENDVYAVNSLINSY 160

[Close]
BLAST of CsGy1G029520 vs. TAIR10
Match: AT3G15930.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 5.2e-12
Identity = 44/145 (30.34%), Postives = 76/145 (52.41%), Query Frame = 0 

Query: 7   LLSSCKSFRQIKQVHARLITTGLILHPIPTNKL-LKQLSSIFAPISYAHMVFDHFPQPDL 66
           +L  CK+  Q KQ+H++ IT G+  +P    KL +   S +   +SYA+ +F   P+PD+
Sbjct: 40  ILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDV 99

Query: 67  FLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLE-GEQV 126
            ++N +IK   +S         +    + +E + P+ ++F           G L  G+++
Sbjct: 100 VVWNNMIK--GWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKL 159

Query: 127 RVHAIKLGLENNLFVTNALIGMYLL 150
             H +K GL +NL+V NAL+ MY L
Sbjct: 160 HCHVVKFGLGSNLYVQNALVKMYSL 182

[Close]
BLAST of CsGy1G029520 vs. TAIR10
Match: AT4G18840.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11
Identity = 43/138 (31.16%), Postives = 71/138 (51.45%), Query Frame = 0 

Query: 12  KSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAP--ISYAHMVFDHFPQPDLFLYN 71
           KS  +I+Q HA ++ TGL       +KL+   ++   P  +SYAH + +    P+ F +N
Sbjct: 50  KSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHN 109

Query: 72  TIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLEGEQVRVHAI 131
           ++I+  A S+T    + T FR ++    + P++YSF           G  EG Q+    I
Sbjct: 110 SVIRAYANSSTPEV-ALTVFREMLLGP-VFPDKYSFTFVLKACAAFCGFEEGRQIHGLFI 169

Query: 132 KLGLENNLFVTNALIGMY 148
           K GL  ++FV N L+ +Y
Sbjct: 170 KSGLVTDVFVENTLVNVY 185

[Close]
BLAST of CsGy1G029520 vs. Swiss-Prot
Match: sp|Q9CA54|PP122_ARATH (Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H71 PE=2 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.8e-13
Identity = 47/145 (32.41%), Postives = 76/145 (52.41%), Query Frame = 0 

Query: 4   CDFLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLS-SIFAPISYAHMVFDHFPQ 63
           C  LL+SCK+ R + Q+H   I  G+      T KL+   + SI   + YA  +   FP+
Sbjct: 8   CLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPE 67

Query: 64  PDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLEGE 123
           PD F++NT+++  +  +    +S   F  ++R+  + P+ +SFA           +  G 
Sbjct: 68  PDAFMFNTLVRGYS-ESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGF 127

Query: 124 QVRVHAIKLGLENNLFVTNALIGMY 148
           Q+   A+K GLE++LFV   LIGMY
Sbjct: 128 QMHCQALKHGLESHLFVGTTLIGMY 151

[Close]
BLAST of CsGy1G029520 vs. Swiss-Prot
Match: sp|Q9FG85|PP415_ARATH (Pentatricopeptide repeat-containing protein At5g43790 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E30 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.4e-11
Identity = 47/152 (30.92%), Postives = 80/152 (52.63%), Query Frame = 0 

Query: 3   RCDFLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQ 62
           RC  L+S CKS + +KQ+HA++IT GL  H  P +KLL   S++   +SYA  +    P 
Sbjct: 11  RCLNLISKCKSLQNLKQIHAQIITIGLSHHTYPLSKLLHLSSTVC--LSYALSILRQIPN 70

Query: 63  PDLFLYNTIIK--VLAFSTTSSADSFTKFRSLI--REERLVPNQYSF-AXXXXXXXXXVG 122
           P +FLYNT+I   V   ++T +  +F+ +  ++  R   + PN++++ +           
Sbjct: 71  PSVFLYNTLISSIVSNHNSTQTHLAFSLYDQILSSRSNFVRPNEFTYPSLFKASGFDAQW 130

Query: 123 VLEGEQVRVHAIKL--GLENNLFVTNALIGMY 148
              G  +  H +K    + ++ FV  AL+G Y
Sbjct: 131 HRHGRALHAHVLKFLEPVNHDRFVQAALVGFY 160

[Close]
BLAST of CsGy1G029520 vs. Swiss-Prot
Match: sp|Q9FJY7|PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.1e-11
Identity = 48/149 (32.21%), Postives = 71/149 (47.65%), Query Frame = 0 

Query: 8   LSSCKSFRQIKQVHARLITTGLILHPIPTNKLL----KQLSSIFAPISYAHMVFDHFPQP 67
           L  C    ++KQ+HAR++ TGL+       K L       SS F P  YA +VFD F +P
Sbjct: 21  LQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLP--YAQIVFDGFDRP 80

Query: 68  DLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLV-----PNQYSFAXXXXXXXXXVGV 127
           D FL+N +I+   FS +   +     RSL+  +R++      N Y+F             
Sbjct: 81  DTFLWNLMIR--GFSCSDEPE-----RSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAF 140

Query: 128 LEGEQVRVHAIKLGLENNLFVTNALIGMY 148
            E  Q+     KLG EN+++  N+LI  Y
Sbjct: 141 EETTQIHAQITKLGYENDVYAVNSLINSY 160

[Close]
BLAST of CsGy1G029520 vs. Swiss-Prot
Match: sp|Q9LSB8|PP235_ARATH (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 68.6 bits (166), Expect = 9.3e-11
Identity = 44/145 (30.34%), Postives = 76/145 (52.41%), Query Frame = 0 

Query: 7   LLSSCKSFRQIKQVHARLITTGLILHPIPTNKL-LKQLSSIFAPISYAHMVFDHFPQPDL 66
           +L  CK+  Q KQ+H++ IT G+  +P    KL +   S +   +SYA+ +F   P+PD+
Sbjct: 40  ILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDV 99

Query: 67  FLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLE-GEQV 126
            ++N +IK   +S         +    + +E + P+ ++F           G L  G+++
Sbjct: 100 VVWNNMIK--GWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKL 159

Query: 127 RVHAIKLGLENNLFVTNALIGMYLL 150
             H +K GL +NL+V NAL+ MY L
Sbjct: 160 HCHVVKFGLGSNLYVQNALVKMYSL 182

[Close]
BLAST of CsGy1G029520 vs. Swiss-Prot
Match: sp|O49399|PP321_ARATH (Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E101 PE=3 SV=2)

HSP 1 Score: 67.4 bits (163), Expect = 2.1e-10
Identity = 43/138 (31.16%), Postives = 71/138 (51.45%), Query Frame = 0 

Query: 12  KSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAP--ISYAHMVFDHFPQPDLFLYN 71
           KS  +I+Q HA ++ TGL       +KL+   ++   P  +SYAH + +    P+ F +N
Sbjct: 50  KSLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAHSILNRIGSPNGFTHN 109

Query: 72  TIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLEGEQVRVHAI 131
           ++I+  A S+T    + T FR ++    + P++YSF           G  EG Q+    I
Sbjct: 110 SVIRAYANSSTPEV-ALTVFREMLLGP-VFPDKYSFTFVLKACAAFCGFEEGRQIHGLFI 169

Query: 132 KLGLENNLFVTNALIGMY 148
           K GL  ++FV N L+ +Y
Sbjct: 170 KSGLVTDVFVENTLVNVY 185

[Close]
BLAST of CsGy1G029520 vs. TrEMBL
Match: tr|A0A0A0LX83|A0A0A0LX83_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G612890 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 2.3e-70
Identity = 150/154 (97.40%), Postives = 152/154 (98.70%), Query Frame = 0 

Query: 1   MVRCDFLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHF 60
           MVRCDFLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHF
Sbjct: 1   MVRCDFLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHF 60

Query: 61  PQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLE 120
           PQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLE
Sbjct: 61  PQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLE 120

Query: 121 GEQVRVHAIKLGLENNLFVTNALIGMYLLLDTVI 155
           GEQVRVHAIKLGLENNLFVTNALIGMY+ LD V+
Sbjct: 121 GEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVV 154

[Close]
BLAST of CsGy1G029520 vs. TrEMBL
Match: tr|A0A1S3BNM1|A0A1S3BNM1_CUCME (pentatricopeptide repeat-containing protein At5g66520-like OS=Cucumis melo OX=3656 GN=LOC103492046 PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.1e-68
Identity = 136/154 (88.31%), Postives = 142/154 (92.21%), Query Frame = 0 

Query: 1   MVRCDFLLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHF 60
           MVRCDFLL SCKSFRQIKQVHA+LIT+GLILHPIPTNKLLKQLSSIFAPISYAHMVFDHF
Sbjct: 1   MVRCDFLLGSCKSFRQIKQVHAQLITSGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHF 60

Query: 61  PQPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLE 120
           PQPDLFLYNTIIKVLAFSTTSSADSFT+FRSLIREERLVPNQYSFA         VGVLE
Sbjct: 61  PQPDLFLYNTIIKVLAFSTTSSADSFTRFRSLIREERLVPNQYSFAFAFKACGSGVGVLE 120

Query: 121 GEQVRVHAIKLGLENNLFVTNALIGMYLLLDTVI 155
           GEQVRVHA+KLGLENNLFVTNALIGMY+ LD V+
Sbjct: 121 GEQVRVHALKLGLENNLFVTNALIGMYVNLDFVV 154

[Close]
BLAST of CsGy1G029520 vs. TrEMBL
Match: tr|A0A1U8A6C4|A0A1U8A6C4_NELNU (pentatricopeptide repeat-containing protein At3g62890-like OS=Nelumbo nucifera OX=4432 GN=LOC104597525 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.4e-35
Identity = 80/142 (56.34%), Postives = 102/142 (71.83%), Query Frame = 0 

Query: 7   LLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLS-SIFAPISYAHMVFDHFPQPDL 66
           L  SCKS  Q+KQ HA L+TTGLILHPIP  +LLK L+ S FA + YA ++FD  P PDL
Sbjct: 27  LTDSCKSMDQMKQAHALLVTTGLILHPIPATRLLKLLTLSSFASLPYAQLLFDQIPSPDL 86

Query: 67  FLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLEGEQVR 126
           F+YNT+IK  A +T SS  S   FRS++R+  LVPNQY+F          +G+ EG+QVR
Sbjct: 87  FIYNTMIKAHASTTDSSCSSLLIFRSILRDSSLVPNQYTFVFVLKACSQGLGIREGQQVR 146

Query: 127 VHAIKLGLENNLFVTNALIGMY 148
           V+A+K+GLE+N+FVTNALI MY
Sbjct: 147 VYAMKVGLESNVFVTNALIQMY 168

[Close]
BLAST of CsGy1G029520 vs. TrEMBL
Match: tr|K7MIR4|K7MIR4_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_16G204800 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.9e-35
Identity = 80/141 (56.74%), Postives = 99/141 (70.21%), Query Frame = 0 

Query: 7   LLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDLF 66
           L+ SCKS +QIKQ HA+LITT LI HP+  NKLLK  +   A +SYAH +FD  PQPDLF
Sbjct: 23  LIDSCKSMQQIKQTHAQLITTALISHPVSANKLLKLAAC--ASLSYAHKLFDQIPQPDLF 82

Query: 67  LYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLEGEQVRV 126
           +YNT+IK  + S  S  +S   FRSL ++  L PN+YSF          +GV EGEQVR+
Sbjct: 83  IYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEGEQVRI 142

Query: 127 HAIKLGLENNLFVTNALIGMY 148
           HA+K+GLENN+FV NALIGMY
Sbjct: 143 HAVKVGLENNVFVVNALIGMY 161

[Close]
BLAST of CsGy1G029520 vs. TrEMBL
Match: tr|A0A1S3UPL3|A0A1S3UPL3_VIGRR (pentatricopeptide repeat-containing protein At5g66520-like OS=Vigna radiata var. radiata OX=3916 GN=LOC106767530 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.4e-34
Identity = 76/141 (53.90%), Postives = 99/141 (70.21%), Query Frame = 0 

Query: 7   LLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDLF 66
           L+ SCKS +QIKQ H++L+TT LI HP+  +KLLK   + +  +SYAH +FD  PQPDLF
Sbjct: 23  LIDSCKSMQQIKQTHSQLVTTALISHPVSAHKLLK--LTAYVSLSYAHKLFDQIPQPDLF 82

Query: 67  LYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAXXXXXXXXXVGVLEGEQVRV 126
           +YNT+IK  +    S  +SF  FRSLIR+  + PN+YSF          +G+ EG+QVRV
Sbjct: 83  IYNTMIKAHSMLPHSCHNSFAVFRSLIRDSGVFPNRYSFVYAFGACGNGLGMQEGQQVRV 142

Query: 127 HAIKLGLENNLFVTNALIGMY 148
           HA+K GLENN+FV NALIGMY
Sbjct: 143 HAVKTGLENNIFVLNALIGMY 161

The following BLAST results are available for this feature:
BLAST of CsGy1G029520 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139110.13.4e-7097.40PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Cucumis s... [more]
XP_008450449.13.2e-6888.31PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Cucumis m... [more]
XP_023529533.11.6e-5176.51pentatricopeptide repeat-containing protein At3g62890-like [Cucurbita pepo subsp... [more]
XP_022927711.12.7e-5175.84pentatricopeptide repeat-containing protein At3g62890-like [Cucurbita moschata] ... [more]
XP_022967088.12.3e-5075.17pentatricopeptide repeat-containing protein At5g66520-like [Cucurbita maxima][more]
BLAST of CsGy1G029520 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G74630.13.2e-1432.41Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G43790.11.4e-1230.92Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G66520.14.0e-1232.21Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G15930.15.2e-1230.34Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G18840.11.1e-1131.16Pentatricopeptide repeat (PPR-like) superfamily protein[more]
BLAST of CsGy1G029520 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9CA54|PP122_ARATH5.8e-1332.41Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana OX... [more]
sp|Q9FG85|PP415_ARATH2.4e-1130.92Pentatricopeptide repeat-containing protein At5g43790 OS=Arabidopsis thaliana OX... [more]
sp|Q9FJY7|PP449_ARATH7.1e-1132.21Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana OX... [more]
sp|Q9LSB8|PP235_ARATH9.3e-1130.34Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis th... [more]
sp|O49399|PP321_ARATH2.1e-1031.16Pentatricopeptide repeat-containing protein At4g18840 OS=Arabidopsis thaliana OX... [more]
BLAST of CsGy1G029520 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LX83|A0A0A0LX83_CUCSA2.3e-7097.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G612890 PE=4 SV=1[more]
tr|A0A1S3BNM1|A0A1S3BNM1_CUCME2.1e-6888.31pentatricopeptide repeat-containing protein At5g66520-like OS=Cucumis melo OX=36... [more]
tr|A0A1U8A6C4|A0A1U8A6C4_NELNU2.4e-3556.34pentatricopeptide repeat-containing protein At3g62890-like OS=Nelumbo nucifera O... [more]
tr|K7MIR4|K7MIR4_SOYBN6.9e-3556.74Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_16G204800 PE=4 SV=1[more]
tr|A0A1S3UPL3|A0A1S3UPL3_VIGRR4.4e-3453.90pentatricopeptide repeat-containing protein At5g66520-like OS=Vigna radiata var.... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009451 RNA modification
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0005575 cellular_component
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G029520.1CsGy1G029520.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 7..165
e-value: 6.8E-6
score: 27.7
NoneNo IPR availablePANTHERPTHR24015:SF786SUBFAMILY NOT NAMEDcoord: 7..147
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 7..147

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G029520CSPI01G30140Wild cucumber (PI 183967)cgybcpiB002
CsGy1G029520MELO3C015213.2Melon (DHL92) v3.6.1cgybmedB032
CsGy1G029520CsaV3_1G042570Cucumber (Chinese Long) v3cgybcucB001
CsGy1G029520Cla97C03G063670Watermelon (97103) v2cgybwmbB041
CsGy1G029520Bhi02G001336Wax gourdcgybwgoB081
CsGy1G029520Carg17984Silver-seed gourdcarcgybB0186
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G029520Cucumber (Chinese Long) v3cgybcucB054
CsGy1G029520Watermelon (97103) v2cgybwmbB029
CsGy1G029520Wax gourdcgybwgoB071
CsGy1G029520Wax gourdcgybwgoB094
CsGy1G029520Cucumber (Gy14) v2cgybcgybB042
CsGy1G029520Cucurbita maxima (Rimu)cgybcmaB013
CsGy1G029520Cucurbita maxima (Rimu)cgybcmaB027
CsGy1G029520Cucurbita maxima (Rimu)cgybcmaB144
CsGy1G029520Cucurbita moschata (Rifu)cgybcmoB013
CsGy1G029520Cucurbita moschata (Rifu)cgybcmoB027
CsGy1G029520Cucurbita moschata (Rifu)cgybcmoB110
CsGy1G029520Cucurbita moschata (Rifu)cgybcmoB135
CsGy1G029520Cucurbita pepo (Zucchini)cgybcpeB038
CsGy1G029520Cucurbita pepo (Zucchini)cgybcpeB039
CsGy1G029520Cucurbita pepo (Zucchini)cgybcpeB125
CsGy1G029520Cucurbita pepo (Zucchini)cgybcpeB137
CsGy1G029520Cucumber (Chinese Long) v2cgybcuB002
CsGy1G029520Cucumber (Chinese Long) v2cgybcuB049
CsGy1G029520Bottle gourd (USVL1VR-Ls)cgyblsiB037
CsGy1G029520Bottle gourd (USVL1VR-Ls)cgyblsiB055
CsGy1G029520Melon (DHL92) v3.5.1cgybmeB037
CsGy1G029520Melon (DHL92) v3.5.1cgybmeB038
CsGy1G029520Melon (DHL92) v3.6.1cgybmedB060
CsGy1G029520Watermelon (Charleston Gray)cgybwcgB043
CsGy1G029520Watermelon (97103) v1cgybwmB022
CsGy1G029520Wild cucumber (PI 183967)cgybcpiB047
CsGy1G029520Silver-seed gourdcarcgybB0475
CsGy1G029520Silver-seed gourdcarcgybB0527
CsGy1G029520Silver-seed gourdcarcgybB0905