CsGy1G029030 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G029030
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	lamin-like protein
Location	Chr1 : 27049053 .. 27050578 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGGGATGGCGGCAGAGGCAATGATCGTCATGACAGTGGTGATGGTGGTCGGGTGGTTGTTATCTGGAGTTGAGGGTAAACAGCCGGTGTTGCATAACGTTGGAGGAGGAAAGTATACTTGGACAACTAATATTAACTTCACTGATTGGTCCATTCATGACCACTTTTATGTTGGCGATTGGCTTTGTAAGTTTTTTCCCCTTTAAATTTGGCTAATGACATTGTGTTGTCTAAGTAAAGGCTAGAAAGTGGTATGTTTTTCATAAATAGTTTTTTTTACAATAACTATATATTATGCCAAATAGTACTGAATGAAGCTGAGTTCAAGAACTTTTTCATATAGGGTTAAGAAGTTAAATATTTTGGCATAAATTATCCCACTTGCAAGGTAAAATTTGTTTTTCACCTAAAGCTTGTATTTAAGTAATCATTAATTTTGAGTTCTTACTCCATTTCTTCCATTTGGGTTTTCATCACTTTTTCAATAGTTTAATCTCATTTTTGTTGCTCTCACAACTCTTTTACAAACAACATTTGATCATTAAAGTCAAAAGGAAATCTCACATCTTGATTATTTAAGTTCTTATTTAATGTCATGATTTATTATCAAAATTCAAACGTGTATTGTAAAGACTACAGGCCAAATTATTAAATTAAAAAACGTGAGTGTGAAAATGTTATTAAGAGGAAGATTTGAACTTGTGATTACTCCTAATAAAGCTTATAATTAGTTATATATTGATTATGTTAATACAAACTTTTGTGACGTTTCTAACTTTTTTTGTTTTTTAGATTTTGGATTCGATAAACATATCTACAACGTGTTAGAAGTGAACAAAACGAGTTACGAGAATTGCAACGAGAAGGATTTCATTTTCAACATAACAAAGGGAGGAAGAGATGTGTTCAATCTAACAGAAGCAAAGACATATTATTTTCTAAGTGGAAGAGGATTTTGCTTTCAAGGAATGAAAGTTGCTGTTTTTGTTGAAGAATACTCTCCTCCTCCTTCCACTATAATTTCATCACCAAATTTACCCAAAGATAATTCCAATCTTTCTCCATCTTTAAAGCCATTATTAATACCTTTCTCCTTCTTCCTATTAATTGCTCAATATTTCCTCCATGAGACTAATCCTTTCTTTTCTAAATTAGGGTTTATCGATACATTTATTTATATTTTAAATAATTAATTAGGGCTAAAATTAGGGGTTAGCTTTGCTTGGGTTTGAATCCTTTAACTTCTCACTATGATTCTAGTTTAAGTTTTGTGTTAAAGGAATGATAAAATAAATTTGAAGTTAACTATAGTTAGTCATTAGGGTAGAGCTAGTAGCTGGTTGAAAGTTTCAACTTTGACTTGTTTGAAATTTGTAATTGGAGTATTGTTAGAAGAAATTGGTGTGAAATAAAGTACTTTTTTCACATTAGTATTTACTTTTGTTTACAAGTAAAAAGTTAGGGAATATATATTCGTTTGGTTCTAATATATTGTGTTGTGAATGAAGACAAACCATGCTTG

mRNA sequence

ATGTTCGGGATGGCGGCAGAGGCAATGATCGTCATGACAGTGGTGATGGTGGTCGGGTGGTTGTTATCTGGAGTTGAGGATTTTGGATTCGATAAACATATCTACAACGTGTTAGAAGTGAACAAAACGAGTTACGAGAATTGCAACGAGAAGGATTTCATTTTCAACATAACAAAGGGAGGAAGAGATGTGTTCAATCTAACAGAAGCAAAGACATATTATTTTCTAAGTGGAAGAGGATTTTGCTTTCAAGGAATGAAAGTTGCTGTTTTTGTTGAAGAATACTCTCCTCCTCCTTCCACTATAATTTCATCACCAAATTTACCCAAAGATAATTCCAATCTTTCTCCATCTTTAAAGCCATTATTAATACCTTTCTCCTTCTTCCTATTAATTGCTCAATATTTCCTCCATGAGACTAATCCTTTCTTTTCTAAATTAGGGTTTATCGATACATTTATTTATATTTTAAATAATTAATTAGGGCTAAAATTAGGGGTTAGCTTTGCTTGGGTTTGAATCCTTTAACTTCTCACTATGATTCTAGTTTAAGTTTTGTGTTAAAGGAATGATAAAATAAATTTGAAGTTAACTATAGTTAGTCATTAGGGTAGAGCTAGTAGCTGGTTGAAAGTTTCAACTTTGACTTGTTTGAAATTTGTAATTGGAGTATTGTTAGAAGAAATTGGTGTGAAATAAAGTACTTTTTTCACATTAGTATTTACTTTTGTTTACAAGTAAAAAGTTAGGGAATATATATTCGTTTGGTTCTAATATATTGTGTTGTGAATGAAGACAAACCATGCTTG

Coding sequence (CDS)

ATGTTCGGGATGGCGGCAGAGGCAATGATCGTCATGACAGTGGTGATGGTGGTCGGGTGGTTGTTATCTGGAGTTGAGGATTTTGGATTCGATAAACATATCTACAACGTGTTAGAAGTGAACAAAACGAGTTACGAGAATTGCAACGAGAAGGATTTCATTTTCAACATAACAAAGGGAGGAAGAGATGTGTTCAATCTAACAGAAGCAAAGACATATTATTTTCTAAGTGGAAGAGGATTTTGCTTTCAAGGAATGAAAGTTGCTGTTTTTGTTGAAGAATACTCTCCTCCTCCTTCCACTATAATTTCATCACCAAATTTACCCAAAGATAATTCCAATCTTTCTCCATCTTTAAAGCCATTATTAATACCTTTCTCCTTCTTCCTATTAATTGCTCAATATTTCCTCCATGAGACTAATCCTTTCTTTTCTAAATTAGGGTTTATCGATACATTTATTTATATTTTAAATAATTAA

Protein sequence

MFGMAAEAMIVMTVVMVVGWLLSGVEDFGFDKHIYNVLEVNKTSYENCNEKDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCFQGMKVAVFVEEYSPPPSTIISSPNLPKDNSNLSPSLKPLLIPFSFFLLIAQYFLHETNPFFSKLGFIDTFIYILNN

Homology

[Close]

BLAST of CsGy1G029030 vs. NCBI nr
Match: XP_008451094.1 (PREDICTED: lamin-like protein [Cucumis melo])

HSP 1 Score: 205.3 bits (521), Expect = 1.5e-49
Identity = 115/184 (62.50%), Postives = 121/184 (65.76%), Query Frame = 0


Query: 1   MFGMAAEAMIVMTVVMVVGWLLSGVED--------------------------------- 60
           MFGMAA+ +++ TVV+VVGWLL GVE                                  
Sbjct: 1   MFGMAAK-VVITTVVVVVGWLLCGVEGKQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVG 60

Query: 61  ----FGFDKHIYNVLEVNKTSYENCNEKDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCF 120
               FGFDKHIYNVLEVNKTSYENCN+KDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCF
Sbjct: 61  DWLYFGFDKHIYNVLEVNKTSYENCNDKDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCF 120

Query: 121 QGMKVAVFVEEYSPPPSTIISSPNLPKDNSNLSPSLKPLLIPFSFFLLIAQYFLHETNPF 148
           QGMKVAVFVEEYS PP TIIS PNL                 FSF LLIAQYFLHE NPF
Sbjct: 121 QGMKVAVFVEEYSTPPPTIISPPNLXXXXXXXXXXXXXXXXXFSFLLLIAQYFLHEPNPF 180

[Close]

BLAST of CsGy1G029030 vs. NCBI nr
Match: XP_022157364.1 (lamin-like protein [Momordica charantia])

HSP 1 Score: 152.1 bits (383), Expect = 1.5e-33
Identity = 82/110 (74.55%), Postives = 93/110 (84.55%), Query Frame = 0


Query: 28  FGFDKHIYNVLEVNKTSYENCNEKDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCFQGMK 87
           FGFDKHIYNVLEVN+TSYE+CNEKDFIFNIT+GGRDVFNLT+AK YYFLSGRGFC+QGMK
Sbjct: 62  FGFDKHIYNVLEVNETSYESCNEKDFIFNITRGGRDVFNLTQAKPYYFLSGRGFCYQGMK 121

Query: 88  VAVFVEEYSPPPSTIISSPNLPKDNSNLSPS-LKPLL-IPFSFFLLIAQY 136
           +AVFVEE SPP +   S PNLPK  SNLSPS L+PL  +P   F +IA +
Sbjct: 122 LAVFVEE-SPPNNN--SPPNLPK-MSNLSPSILQPLFSLPLLLFTIIANF 167

[Close]

BLAST of CsGy1G029030 vs. NCBI nr
Match: XP_022988228.1 (lamin-like protein [Cucurbita maxima])

HSP 1 Score: 146.7 bits (369), Expect = 6.5e-32
Identity = 90/173 (52.02%), Postives = 106/173 (61.27%), Query Frame = 0


Query: 1   MFGMAAEAMIVMTVVMVV---GWLLSGVED------------------------------ 60
           MFGM AE   V TVV+VV   GWLL GV+                               
Sbjct: 1   MFGMTAEVATVTTVVVVVTMAGWLLGGVDGRQPVLHRVGGGKYTWTTNINFTDWSIHEHF 60

Query: 61  -------FGFDKHIYNVLEVNKTSYENCNEKDFIFNITKGGRDVFNLTEAKTYYFLSGRG 120
                  FGFDK IYNVL+VNKTSY++CNE DF+FN+T+GGRDVFNLT+AK YYFLSGRG
Sbjct: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120

Query: 121 FCFQGMKVAVFVEEYSPPPSTIISSPNLPKDNSNLSPSLKPLLIPFSFFLLIA 134
           FCFQGMKVA+FVE+ SPP    ISSP +   +S++ P LKP L   S F+ IA
Sbjct: 121 FCFQGMKVAIFVED-SPP----ISSPKIANHSSSIQP-LKP-LSSLSLFITIA 166

[Close]

BLAST of CsGy1G029030 vs. NCBI nr
Match: XP_022960973.1 (lamin-like protein [Cucurbita moschata])

HSP 1 Score: 146.0 bits (367), Expect = 1.1e-31
Identity = 86/162 (53.09%), Postives = 100/162 (61.73%), Query Frame = 0


Query: 1   MFGMAAEAMIVMTVVMVV---GWLLSGVED------------------------------ 60
           MFGM  EA  V TV +VV   GWLL GVE                               
Sbjct: 1   MFGMTVEATTVTTVAVVVTMAGWLLGGVEGREPVLHRVGGGKYTWTTNVNFTDWSIHEHF 60

Query: 61  -------FGFDKHIYNVLEVNKTSYENCNEKDFIFNITKGGRDVFNLTEAKTYYFLSGRG 120
                  FGFDK IYNVL+VNKTSY++CNE DF+FN+T+GGRDVFNLT+AK YYFLSGRG
Sbjct: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120

Query: 121 FCFQGMKVAVFVEEYSPPPSTIISSPNLPKDNSNLSPSLKPL 123
           FCFQGMKVA+FVE+ SPP    ISSP +   +S++ P LKPL
Sbjct: 121 FCFQGMKVAIFVED-SPP----ISSPKISNHSSSIQP-LKPL 156

[Close]

BLAST of CsGy1G029030 vs. NCBI nr
Match: XP_023516910.1 (lamin-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 144.4 bits (363), Expect = 3.2e-31
Identity = 85/162 (52.47%), Postives = 99/162 (61.11%), Query Frame = 0


Query: 1   MFGMAAEAMIVMTVVMVV---GWLLSGVED------------------------------ 60
           MFGM  E   V TV +VV   GWLL GVE                               
Sbjct: 1   MFGMTTEVATVATVAVVVTMAGWLLGGVEGREPVLHRVGGGKYTWTTNVNFTDWSIHEHF 60

Query: 61  -------FGFDKHIYNVLEVNKTSYENCNEKDFIFNITKGGRDVFNLTEAKTYYFLSGRG 120
                  FGFDK IYNVL+VNKTSY++CNE DF+FN+T+GGRDVFNLT+AK YYFLSGRG
Sbjct: 61  YVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRG 120

Query: 121 FCFQGMKVAVFVEEYSPPPSTIISSPNLPKDNSNLSPSLKPL 123
           FCFQGMKVA+FVE+ SPP    ISSP +   +S++ P LKPL
Sbjct: 121 FCFQGMKVAIFVED-SPP----ISSPRISNHSSSIQP-LKPL 156

[Close]

BLAST of CsGy1G029030 vs. TAIR10
Match: AT2G27035.1 (early nodulin-like protein 20)

HSP 1 Score: 95.9 bits (237), Expect = 2.4e-20
Identity = 44/86 (51.16%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 28  FGFDKHIYNVLEVNKTSYENCNEKDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCFQGMK 87
           FGF++  +N+L+VNK+SYE C + D+IFNIT+GGRDVF L E K YYF+ GRG+C +GMK
Sbjct: 60  FGFNRTRHNILQVNKSSYEQCVDNDYIFNITRGGRDVFQLLEPKPYYFICGRGYCLKGMK 119

Query: 88  VAVFVEEYSPPPS----TIISSPNLP 110
           +A+ V    PP +    T  ++P +P
Sbjct: 120 LAITVLPQPPPSAPTNFTSTTTPLIP 145

[Close]

BLAST of CsGy1G029030 vs. TAIR10
Match: AT5G15350.1 (early nodulin-like protein 17)

HSP 1 Score: 77.8 bits (190), Expect = 6.7e-15
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 28  FGFDKHIYNVLEVNKTSYENCNEKDFIFNITKG-GRDVFNLTEAKTYYFLSGRGFCFQGM 87
           F FD++ +N+LEVNKT YE C     I N T+G GRD+  L + K YY L G+G C+ GM
Sbjct: 60  FVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGM 119

Query: 88  KVAVFVEEYSPPPSTIISSPNLPKDNSNLSPSLKPLLIPFSFFLLIAQY 136
           K++V VE+  PPP    S+P     + ++   L   +IP S F   A +
Sbjct: 120 KLSVKVEKLPPPPK---SAPVKNIGSVSMVTGLAQFMIPVSLFAFPAMW 165

[Close]

BLAST of CsGy1G029030 vs. TAIR10
Match: AT4G12880.1 (early nodulin-like protein 19)

HSP 1 Score: 64.7 bits (156), Expect = 5.9e-11
Identity = 34/67 (50.75%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 28  FGFDKHIYNVLEVNKTSYENCNEKDFIFNITKG-GRDVFNLTEAKTYYFLSGRGFCFQGM 87
           F F +  +N+LEVNK  YE C     I N T+G GRD+  L E + YY L GRG C QGM
Sbjct: 60  FVFYRDQHNILEVNKADYEKCISNRPIRNYTRGAGRDIVPLYETRRYYLLDGRGGCVQGM 119

Query: 88  KVAVFVE 94
           K+ V VE
Sbjct: 120 KLDVLVE 126

[Close]

BLAST of CsGy1G029030 vs. Swiss-Prot
Match: sp|Q39131|LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.2e-13
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 28  FGFDKHIYNVLEVNKTSYENCNEKDFIFNITKG-GRDVFNLTEAKTYYFLSGRGFCFQGM 87
           F FD++ +N+LEVNKT YE C     I N T+G GRD+  L + K YY L G+G C+ GM
Sbjct: 60  FVFDRNQHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGM 119

Query: 88  KVAVFVEEYSPPPSTIISSPNLPKDNSNLSPSLKPLLIPFSFFLLIAQY 136
           K++V VE+  PPP    S+P     + ++   L   +IP S F   A +
Sbjct: 120 KLSVKVEKLPPPPK---SAPVKNIGSVSMVTGLAQFMIPVSLFAFPAMW 165

[Close]

BLAST of CsGy1G029030 vs. TrEMBL
Match: tr|A0A1S3BQT0|A0A1S3BQT0_CUCME (lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103492474 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.0e-49
Identity = 115/184 (62.50%), Postives = 121/184 (65.76%), Query Frame = 0


Query: 1   MFGMAAEAMIVMTVVMVVGWLLSGVED--------------------------------- 60
           MFGMAA+ +++ TVV+VVGWLL GVE                                  
Sbjct: 1   MFGMAAK-VVITTVVVVVGWLLCGVEGKQPVLHNVGGGKYTWTTNINFTDWSIHEHFYVG 60

Query: 61  ----FGFDKHIYNVLEVNKTSYENCNEKDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCF 120
               FGFDKHIYNVLEVNKTSYENCN+KDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCF
Sbjct: 61  DWLYFGFDKHIYNVLEVNKTSYENCNDKDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCF 120

Query: 121 QGMKVAVFVEEYSPPPSTIISSPNLPKDNSNLSPSLKPLLIPFSFFLLIAQYFLHETNPF 148
           QGMKVAVFVEEYS PP TIIS PNL                 FSF LLIAQYFLHE NPF
Sbjct: 121 QGMKVAVFVEEYSTPPPTIISPPNLXXXXXXXXXXXXXXXXXFSFLLLIAQYFLHEPNPF 180

[Close]

BLAST of CsGy1G029030 vs. TrEMBL
Match: tr|A0A251NQW0|A0A251NQW0_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G154700 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 57/72 (79.17%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 28  FGFDKHIYNVLEVNKTSYENCNEKDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCFQGMK 87
           FGFDKHIYNVLEVNKTSY+NC +KDFI+N+T+GGRDVFNLTEA TY+FLSGRG+CF+GMK
Sbjct: 63  FGFDKHIYNVLEVNKTSYDNCIDKDFIYNVTRGGRDVFNLTEANTYFFLSGRGYCFEGMK 122

Query: 88  VAVFVEEYSPPP 100
           VAV V E  P P
Sbjct: 123 VAVQVREIPPEP 134

[Close]

BLAST of CsGy1G029030 vs. TrEMBL
Match: tr|M5WML9|M5WML9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa1027162mg PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 57/72 (79.17%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 28  FGFDKHIYNVLEVNKTSYENCNEKDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCFQGMK 87
           FGFDKHIYNVLEVNKTSY+NC +KDFI+N+T+GGRDVFNLTEA TY+FLSGRG+CF+GMK
Sbjct: 52  FGFDKHIYNVLEVNKTSYDNCIDKDFIYNVTRGGRDVFNLTEANTYFFLSGRGYCFEGMK 111

Query: 88  VAVFVEEYSPPP 100
           VAV V E  P P
Sbjct: 112 VAVQVREIPPEP 123

[Close]

BLAST of CsGy1G029030 vs. TrEMBL
Match: tr|A0A2P6QEZ3|A0A2P6QEZ3_ROSCH (Putative cupredoxin OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0049891 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.1e-26
Identity = 55/70 (78.57%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 28  FGFDKHIYNVLEVNKTSYENCNEKDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCFQGMK 87
           FGFDKHIYNVLEVN+TSYENC +K++I+N+T+GGRDVFNLTEAKTYYFL GRG+C++GMK
Sbjct: 68  FGFDKHIYNVLEVNRTSYENCFDKEYIYNVTRGGRDVFNLTEAKTYYFLGGRGYCYKGMK 127

Query: 88  VAVFVEEYSP 98
           VAVFVE+  P
Sbjct: 128 VAVFVEQTPP 137

[Close]

BLAST of CsGy1G029030 vs. TrEMBL
Match: tr|A0A2N9FMV4|A0A2N9FMV4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16113 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 7.9e-26
Identity = 59/84 (70.24%), Postives = 68/84 (80.95%), Query Frame = 0


Query: 28  FGFDKHIYNVLEVNKTSYENCNEKDFIFNITKGGRDVFNLTEAKTYYFLSGRGFCFQGMK 87
           FGFDK +YNVLEVNKTS++NC +KDFI NIT+GGRDVFNLTEAK YYFLSGRG+CF+GMK
Sbjct: 47  FGFDKRLYNVLEVNKTSHDNCIDKDFIKNITRGGRDVFNLTEAKPYYFLSGRGYCFKGMK 106

Query: 88  VAVFVEEYSPPPSTIISSPNLPKD 112
           VA+ V EY  PP+     PN   D
Sbjct: 107 VAMLVLEYHSPPAVPPEVPNPASD 130

The following BLAST results are available for this feature:

BLAST of CsGy1G029030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451094.1	1.5e-49	62.50	PREDICTED: lamin-like protein [Cucumis melo]	[more]
XP_022157364.1	1.5e-33	74.55	lamin-like protein [Momordica charantia]	[more]
XP_022988228.1	6.5e-32	52.02	lamin-like protein [Cucurbita maxima]	[more]
XP_022960973.1	1.1e-31	53.09	lamin-like protein [Cucurbita moschata]	[more]
XP_023516910.1	3.2e-31	52.47	lamin-like protein [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy1G029030 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27035.1	2.4e-20	51.16	early nodulin-like protein 20	[more]
AT5G15350.1	6.7e-15	41.28	early nodulin-like protein 17	[more]
AT4G12880.1	5.9e-11	50.75	early nodulin-like protein 19	[more]

BLAST of CsGy1G029030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q39131\|LAML_ARATH	1.2e-13	41.28	Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1	[more]

BLAST of CsGy1G029030 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BQT0\|A0A1S3BQT0_CUCME	1.0e-49	62.50	lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103492474 PE=4 SV=1	[more]
tr\|A0A251NQW0\|A0A251NQW0_PRUPE	1.6e-26	79.17	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G154700 PE=4 SV=1	[more]
tr\|M5WML9\|M5WML9_PRUPE	1.6e-26	79.17	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa1027162mg PE=4 SV=...	[more]
tr\|A0A2P6QEZ3\|A0A2P6QEZ3_ROSCH	2.1e-26	78.57	Putative cupredoxin OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0049891 PE=4 SV=...	[more]
tr\|A0A2N9FMV4\|A0A2N9FMV4_FAGSY	7.9e-26	70.24	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16113 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity

Vocabulary: **INTERPRO**
Term	Definition
IPR039391	Phytocyanin
IPR008972	Cupredoxin
IPR003245	Phytocyanin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0009055	electron carrier activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G029030.1	CsGy1G029030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 28..86 e-value: 5.1E-8 score: 32.7
IPR003245	Phytocyanin domain	PRODOM	PD003122		coord: 28..92 e-value: 1.0E-19 score: 235.0
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 1..94 score: 16.557
IPR008972	Cupredoxin	GENE3D	G3DSA:2.60.40.420		coord: 21..93 e-value: 1.6E-14 score: 55.4
IPR008972	Cupredoxin	SUPERFAMILY	SSF49503	Cupredoxins	coord: 28..92
None	No IPR available	PANTHER	PTHR33021:SF17	SUBFAMILY NOT NAMED	coord: 15..114
IPR039391	Phytocyanin	PANTHER	PTHR33021	FAMILY NOT NAMED	coord: 15..114

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G029030	Cla011066	Watermelon (97103) v1	cgybwmB022
CsGy1G029030	ClCG03G014080	Watermelon (Charleston Gray)	cgybwcgB043
CsGy1G029030	CmaCh10G009720	Cucurbita maxima (Rimu)	cgybcmaB013
CsGy1G029030	CmoCh10G010250	Cucurbita moschata (Rifu)	cgybcmoB013
CsGy1G029030	Lsi06G004450	Bottle gourd (USVL1VR-Ls)	cgyblsiB055
CsGy1G029030	Cp4.1LG18g01270	Cucurbita pepo (Zucchini)	cgybcpeB039
CsGy1G029030	MELO3C029408.2	Melon (DHL92) v3.6.1	cgybmedB032
CsGy1G029030	CsaV3_1G042160	Cucumber (Chinese Long) v3	cgybcucB001
CsGy1G029030	Cla97C03G064260	Watermelon (97103) v2	cgybwmbB041
CsGy1G029030	Carg16974	Silver-seed gourd	carcgybB0475

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G029030	Wax gourd	cgybwgoB079
CsGy1G029030	Cucurbita maxima (Rimu)	cgybcmaB027
CsGy1G029030	Cucurbita moschata (Rifu)	cgybcmoB027
CsGy1G029030	Cucurbita moschata (Rifu)	cgybcmoB110
CsGy1G029030	Cucurbita pepo (Zucchini)	cgybcpeB125
CsGy1G029030	Cucurbita pepo (Zucchini)	cgybcpeB137
CsGy1G029030	Cucumber (Chinese Long) v2	cgybcuB002
CsGy1G029030	Melon (DHL92) v3.5.1	cgybmeB038
CsGy1G029030	Wild cucumber (PI 183967)	cgybcpiB002
CsGy1G029030	Silver-seed gourd	carcgybB0186
CsGy1G029030	Silver-seed gourd	carcgybB0905