CsGy1G015260 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G015260
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 11216852 .. 11217729 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGTGTTCTCAAGGCTTGCAAAGGCATCAAGGCTCTTTCTTATGGGATTTTGGCTCATAGTTTGGCCACAAAGCACACGTGCACATGTATGCTACTTGCTGTACCATGGATCATGCATTGACTCTGTTAATTGATAGACCTTTTGAAGAATGTTGTGTGCCATCGACTACTTTTGATTGCAGGGTTGACTCTCAGAGGTGATGGTTACAACGGGCTTCAAGCTTTCAGGCAAATGTTACTGGTAACTATACCCATCTTATTATTGCTCCAGCAATGTACTTTACATTTAGGGAGATCATACATCTGTTACTTGTGTTATTAATATTAGCTTATATTACAAGTTTGATCTTTGAGTGTGATGATTTAGGCCTTGTATGGGGAGCTTTGAAGTCACACCTATTTCGACCTTGTATTTTTGAAACATTTGAAACGTTGGACCAATAGGTTTCGAAACTCTTATTGTTGTTTTTATTTTGTCTATTTATTTTTAAAACTTTCAAAGCTCTTAATCTTTTATGTGTGTCTATTTAACCCATGCACTCTAAAAAGTTTCTGATAGTTTCGTAACAACATTCATGACTTTCCAACTGTGTATTAGTTAAGAATCGTAGGTGGGCCAATTTAAAAATAATCCTAATAATACAATCACCACAACTAATTTAGTGATAGGAACTTGTCAAACACAAAAGCTTAAAAAATTATTAGAAATTTGAAGTATAGGATATGAAGATTTTGCCAACTGAGGGTTTATCCCCAAAGTACACAGTATTATAGCCTTGTGAAGATATACTTTTGGAGAGTTGTCATTTTCGCTAGGAGCTTATAAAGCTTATGGATTTTCCAATCCAGGAGAAAAGGATGAACAACGATTAA

mRNA sequence

ATGTCTAGTGTTCTCAAGGCTTGCAAAGGCATCAAGGCTCTTTCTTATGGGATTTTGGCTCATAGTTTGGCCACAAAGCACACGTGCACATGGTTGACTCTCAGAGGTGATGGTTACAACGGGCTTCAAGCTTTCAGGCAAATGTTACTGGAGCTTATAAAGCTTATGGATTTTCCAATCCAGGAGAAAAGGATGAACAACGATTAA

Coding sequence (CDS)

ATGTCTAGTGTTCTCAAGGCTTGCAAAGGCATCAAGGCTCTTTCTTATGGGATTTTGGCTCATAGTTTGGCCACAAAGCACACGTGCACATGGTTGACTCTCAGAGGTGATGGTTACAACGGGCTTCAAGCTTTCAGGCAAATGTTACTGGAGCTTATAAAGCTTATGGATTTTCCAATCCAGGAGAAAAGGATGAACAACGATTAA

Protein sequence

MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLELIKLMDFPIQEKRMNND

Homology

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BLAST of CsGy1G015260 vs. NCBI nr
Match: KGN65014.1 (hypothetical protein Csa_1G181270 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 5.4e-20
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1  MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLEL 53
          MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLL L
Sbjct: 1  MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLAL 52

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BLAST of CsGy1G015260 vs. NCBI nr
Match: XP_022931578.1 (putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita moschata])

HSP 1 Score: 62.4 bits (150), Expect = 6.9e-07
Identity = 43/101 (42.57%), Postives = 50/101 (49.50%), Query Frame = 0


Query: 1   MSSVLKACKGIKALSYGILAHSLATKH-----------------TC-------------- 59
           +SSVLKACKG+KALS G LAHSLATKH                 TC              
Sbjct: 113 LSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTVFNDI 172

[Close]

BLAST of CsGy1G015260 vs. NCBI nr
Match: XP_022989366.1 (putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita maxima])

HSP 1 Score: 62.4 bits (150), Expect = 6.9e-07
Identity = 43/101 (42.57%), Postives = 50/101 (49.50%), Query Frame = 0


Query: 1   MSSVLKACKGIKALSYGILAHSLATKH-----------------TC-------------- 59
           +SSVLKACKG+KALS G LAHSLATKH                 TC              
Sbjct: 113 LSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTVFNDI 172

[Close]

BLAST of CsGy1G015260 vs. NCBI nr
Match: XP_023520790.1 (putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 62.4 bits (150), Expect = 6.9e-07
Identity = 43/101 (42.57%), Postives = 50/101 (49.50%), Query Frame = 0


Query: 1   MSSVLKACKGIKALSYGILAHSLATKH-----------------TC-------------- 59
           +SSVLKACKG+KALS G LAHSLATKH                 TC              
Sbjct: 113 LSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTVFNDI 172

[Close]

BLAST of CsGy1G015260 vs. NCBI nr
Match: XP_011659402.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis sativus] >KGN65978.1 hypothetical protein Csa_1G555630 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 42/94 (44.68%), Postives = 45/94 (47.87%), Query Frame = 0


Query: 1   MSSVLKACKGIKALSYGILAHSLATKH--------------------------------- 52
           MSSVLKACKG+KALS G LAHSLATKH                                 
Sbjct: 112 MSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDI 171

[Close]

BLAST of CsGy1G015260 vs. TrEMBL
Match: tr|A0A0A0LVR2|A0A0A0LVR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181270 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.6e-20
Identity = 51/52 (98.08%), Postives = 51/52 (98.08%), Query Frame = 0


Query: 1  MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLEL 53
          MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLL L
Sbjct: 1  MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLAL 52

[Close]

BLAST of CsGy1G015260 vs. TrEMBL
Match: tr|A0A0A0LW37|A0A0A0LW37_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G555630 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.8e-07
Identity = 42/94 (44.68%), Postives = 45/94 (47.87%), Query Frame = 0


Query: 1   MSSVLKACKGIKALSYGILAHSLATKH--------------------------------- 52
           MSSVLKACKG+KALS G LAHSLATKH                                 
Sbjct: 112 MSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDI 171

[Close]

BLAST of CsGy1G015260 vs. TrEMBL
Match: tr|A0A2N9GTP2|A0A2N9GTP2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27009 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 40/101 (39.60%), Postives = 45/101 (44.55%), Query Frame = 0


Query: 1   MSSVLKACKGIKALSYGILAHSLATKH-----------------TC-------------- 59
           +SS LK CKG+KALSYG L H LA KH                 TC              
Sbjct: 44  LSSALKGCKGMKALSYGTLVHGLAIKHGMKESMYVNNALMDMYATCCVSMDEACMVFQEI 103

[Close]

BLAST of CsGy1G015260 vs. TrEMBL
Match: tr|A0A2N9H6A4|A0A2N9H6A4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35175 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.5e-05
Identity = 40/101 (39.60%), Postives = 45/101 (44.55%), Query Frame = 0


Query: 1   MSSVLKACKGIKALSYGILAHSLATKH-----------------TC-------------- 59
           +SS LK CKG+KALSYG L H LA KH                 TC              
Sbjct: 44  LSSALKGCKGMKALSYGTLVHGLAIKHGMKESMYVNNALMDMYATCCVSMDEACMVFQEI 103

[Close]

BLAST of CsGy1G015260 vs. TrEMBL
Match: tr|F6I4U5|F6I4U5_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0060g00870 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-05
Identity = 40/101 (39.60%), Postives = 46/101 (45.54%), Query Frame = 0


Query: 1   MSSVLKACKGIKALSYGILAHSLATKH-----------------TC-------------- 59
           +SSVLKACKG+K LSYG L H LA KH                 TC              
Sbjct: 112 ISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMVFRGI 171

The following BLAST results are available for this feature:

BLAST of CsGy1G015260 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65014.1	5.4e-20	98.08	hypothetical protein Csa_1G181270 [Cucumis sativus]	[more]
XP_022931578.1	6.9e-07	42.57	putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita moscha...	[more]
XP_022989366.1	6.9e-07	42.57	putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita maxima...	[more]
XP_023520790.1	6.9e-07	42.57	putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita pepo s...	[more]
XP_011659402.1	1.2e-06	44.68	PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucum...	[more]

BLAST of CsGy1G015260 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G015260 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G015260 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LVR2\|A0A0A0LVR2_CUCSA	3.6e-20	98.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181270 PE=4 SV=1	[more]
tr\|A0A0A0LW37\|A0A0A0LW37_CUCSA	7.8e-07	44.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G555630 PE=4 SV=1	[more]
tr\|A0A2N9GTP2\|A0A2N9GTP2_FAGSY	1.5e-05	39.60	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27009 PE=4 SV=1	[more]
tr\|A0A2N9H6A4\|A0A2N9H6A4_FAGSY	1.5e-05	39.60	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35175 PE=4 SV=1	[more]
tr\|F6I4U5\|F6I4U5_VITVI	2.5e-05	39.60	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0060g00870 PE=4 SV=...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G015260.1	CsGy1G015260.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G015260	Csa1G181270	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G015260	CsaV3_1G015680	Cucumber (Chinese Long) v3	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G015260	Cucumber (Chinese Long) v3	cgybcucB046
CsGy1G015260	Watermelon (97103) v2	cgybwmbB006
CsGy1G015260	Watermelon (97103) v2	cgybwmbB009
CsGy1G015260	Wax gourd	cgybwgoB032
CsGy1G015260	Wax gourd	cgybwgoB042
CsGy1G015260	Cucumber (Gy14) v2	cgybcgybB036
CsGy1G015260	Cucurbita maxima (Rimu)	cgybcmaB068
CsGy1G015260	Cucurbita maxima (Rimu)	cgybcmaB095
CsGy1G015260	Cucurbita maxima (Rimu)	cgybcmaB128
CsGy1G015260	Cucurbita moschata (Rifu)	cgybcmoB065
CsGy1G015260	Cucurbita moschata (Rifu)	cgybcmoB084
CsGy1G015260	Cucurbita moschata (Rifu)	cgybcmoB118
CsGy1G015260	Cucurbita pepo (Zucchini)	cgybcpeB007
CsGy1G015260	Cucurbita pepo (Zucchini)	cgybcpeB024
CsGy1G015260	Cucumber (Chinese Long) v2	cgybcuB041
CsGy1G015260	Bottle gourd (USVL1VR-Ls)	cgyblsiB016
CsGy1G015260	Bottle gourd (USVL1VR-Ls)	cgyblsiB029
CsGy1G015260	Bottle gourd (USVL1VR-Ls)	cgyblsiB038
CsGy1G015260	Melon (DHL92) v3.5.1	cgybmeB029
CsGy1G015260	Melon (DHL92) v3.6.1	cgybmedB022
CsGy1G015260	Watermelon (Charleston Gray)	cgybwcgB018
CsGy1G015260	Watermelon (Charleston Gray)	cgybwcgB021
CsGy1G015260	Watermelon (97103) v1	cgybwmB048
CsGy1G015260	Watermelon (97103) v1	cgybwmB043
CsGy1G015260	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G015260	Wild cucumber (PI 183967)	cgybcpiB038
CsGy1G015260	Silver-seed gourd	carcgybB0051
CsGy1G015260	Silver-seed gourd	carcgybB0408