Csa1G181270 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G181270
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10943889 .. 10944281 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAGTGTTCTCAAGGCTTGCAAAGGCATCAAGGCTCTTTCTTATGGGATTTTGGCTCATAGTTTGGCCACAAAGCACACGTGCACATGTATGCTACTTGCTGTACCATGGATCATGCATTGGCTCTGTTAATTGATAGACCTTTTGAAGAATGTTGTGTGCCATCGACTACTTTTGATTGCAGGGTTGACTCTCAGAGGTGATGGTTACAACGGGCTTCAAGCTTTCAGGCAAATGTTACTGGTAACTATACCCATCTTATTATTGCTCCAGCAATGTACTTTACATTTAGGGAGATCATACATCTGTTACTTGTGTTATTAATATTAGCTTATATTACAAGTTTGATCTTTGAGTGTGATGATTTAGGCCTTGTATGGGGAGCTTTGA

mRNA sequence

ATGTCTAGTGTTCTCAAGGCTTGCAAAGGCATCAAGGCTCTTTCTTATGGGATTTTGGCTCATAGTTTGGCCACAAAGCACACGTGCACATGGTTGACTCTCAGAGGTGATGGTTACAACGGGCTTCAAGCTTTCAGGCAAATGTTACTGGCCTTGTATGGGGAGCTTTGA

Coding sequence (CDS)

ATGTCTAGTGTTCTCAAGGCTTGCAAAGGCATCAAGGCTCTTTCTTATGGGATTTTGGCTCATAGTTTGGCCACAAAGCACACGTGCACATGGTTGACTCTCAGAGGTGATGGTTACAACGGGCTTCAAGCTTTCAGGCAAATGTTACTGGCCTTGTATGGGGAGCTTTGA

Protein sequence

MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLALYGEL*
Homology
[Close]
BLAST of Csa1G181270 vs. TrEMBL
Match: A0A0A0LVR2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181270 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 9.3e-24
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLALYGEL 57
          MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLALYGEL
Sbjct: 1  MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLALYGEL 56

[Close]
BLAST of Csa1G181270 vs. TrEMBL
Match: A0A0A0LW37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555630 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-06
Identity = 41/93 (44.09%), Postives = 44/93 (47.31%), Query Frame = 1 

Query: 1   MSSVLKACKGIKALSYGILAHSLATKH--------------------------------- 51
           MSSVLKACKG+KALS G LAHSLATKH                                 
Sbjct: 112 MSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDI 171

[Close]
BLAST of Csa1G181270 vs. NCBI nr
Match: gi|700209918|gb|KGN65014.1| (hypothetical protein Csa_1G181270 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

Query: 1  MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLALYGEL 57
          MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLALYGEL
Sbjct: 1  MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLALYGEL 56

[Close]
BLAST of Csa1G181270 vs. NCBI nr
Match: gi|778662137|ref|XP_011659402.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-06
Identity = 41/93 (44.09%), Postives = 44/93 (47.31%), Query Frame = 1 

Query: 1   MSSVLKACKGIKALSYGILAHSLATKH--------------------------------- 51
           MSSVLKACKG+KALS G LAHSLATKH                                 
Sbjct: 112 MSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDI 171

The following BLAST results are available for this feature:
BLAST of Csa1G181270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVR2_CUCSA9.3e-24100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G181270 PE=4 SV=1[more]
A0A0A0LW37_CUCSA1.3e-0644.09Uncharacterized protein OS=Cucumis sativus GN=Csa_1G555630 PE=4 SV=1[more]
BLAST of Csa1G181270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209918|gb|KGN65014.1|1.3e-23100.00hypothetical protein Csa_1G181270 [Cucumis sativus][more]
gi|778662137|ref|XP_011659402.1|1.9e-0644.09PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucum... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G181270.1Csa1G181270.1mRNA