CsaV3_1G015680 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G015680
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr1 : 11243603 .. 11243995 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAGTGTTCTCAAGGCTTGCAAAGGCATCAAGGCTCTTTCTTATGGGATTTTGGCTCATAGTTTGGCCACAAAGCACACGTGCACATGTATGCTACTTGCTGTACCATGGATCATGCATTGGCTCTGTTAATTGATAGACCTTTTGAAGAATGTTGTGTGCCATCGACTACTTTTGATTGCAGGGTTGACTCTCAGAGGTGATGGTTACAACGGGCTTCAAGCTTTCAGGCAAATGTTACTGGTAACTATACCCATCTTATTATTGCTCCAGCAATGTACTTTACATTTAGGGAGATCATACATCTGTTACTTGTGTTATTAATATTAGCTTATATTACAAGTTTGATCTTTGAGTGTGATGATTTAGGCCTTGTATGGGGAGCTTTGA

mRNA sequence

ATGTCTAGTGTTCTCAAGGCTTGCAAAGGCATCAAGGCTCTTTCTTATGGGATTTTGGCTCATAGTTTGGCCACAAAGCACACGTGCACATGGTTGACTCTCAGAGGTGATGGTTACAACGGGCTTCAAGCTTTCAGGCAAATGTTACTGGCCTTGTATGGGGAGCTTTGA

Coding sequence (CDS)

ATGTCTAGTGTTCTCAAGGCTTGCAAAGGCATCAAGGCTCTTTCTTATGGGATTTTGGCTCATAGTTTGGCCACAAAGCACACGTGCACATGGTTGACTCTCAGAGGTGATGGTTACAACGGGCTTCAAGCTTTCAGGCAAATGTTACTGGCCTTGTATGGGGAGCTTTGA

Protein sequence

MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLALYGEL

Homology

[Close]

BLAST of CsaV3_1G015680 vs. NCBI nr
Match: KGN65014.1 (hypothetical protein Csa_1G181270 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 2.6e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLALYGEL 57
          MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLALYGEL
Sbjct: 1  MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLALYGEL 56

[Close]

BLAST of CsaV3_1G015680 vs. NCBI nr
Match: XP_022931578.1 (putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita moschata])

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 42/93 (45.16%), Postives = 46/93 (49.46%), Query Frame = 0


Query: 1   MSSVLKACKGIKALSYGILAHSLATKH-----------------TC-------------- 51
           +SSVLKACKG+KALS G LAHSLATKH                 TC              
Sbjct: 113 LSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTVFNDI 172

[Close]

BLAST of CsaV3_1G015680 vs. NCBI nr
Match: XP_022989366.1 (putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita maxima])

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 42/93 (45.16%), Postives = 46/93 (49.46%), Query Frame = 0


Query: 1   MSSVLKACKGIKALSYGILAHSLATKH-----------------TC-------------- 51
           +SSVLKACKG+KALS G LAHSLATKH                 TC              
Sbjct: 113 LSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTVFNDI 172

[Close]

BLAST of CsaV3_1G015680 vs. NCBI nr
Match: XP_023520790.1 (putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 42/93 (45.16%), Postives = 46/93 (49.46%), Query Frame = 0


Query: 1   MSSVLKACKGIKALSYGILAHSLATKH-----------------TC-------------- 51
           +SSVLKACKG+KALS G LAHSLATKH                 TC              
Sbjct: 113 LSSVLKACKGMKALSCGTLAHSLATKHGIDGSMYVQNALLDMYATCCATMDDALTVFNDI 172

[Close]

BLAST of CsaV3_1G015680 vs. NCBI nr
Match: XP_011659402.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucumis sativus] >KGN65978.1 hypothetical protein Csa_1G555630 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 3.7e-06
Identity = 41/93 (44.09%), Postives = 44/93 (47.31%), Query Frame = 0


Query: 1   MSSVLKACKGIKALSYGILAHSLATKH--------------------------------- 51
           MSSVLKACKG+KALS G LAHSLATKH                                 
Sbjct: 112 MSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDI 171

[Close]

BLAST of CsaV3_1G015680 vs. TrEMBL
Match: tr|A0A0A0LVR2|A0A0A0LVR2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181270 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLALYGEL 57
          MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLALYGEL
Sbjct: 1  MSSVLKACKGIKALSYGILAHSLATKHTCTWLTLRGDGYNGLQAFRQMLLALYGEL 56

[Close]

BLAST of CsaV3_1G015680 vs. TrEMBL
Match: tr|A0A0A0LW37|A0A0A0LW37_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G555630 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.5e-06
Identity = 41/93 (44.09%), Postives = 44/93 (47.31%), Query Frame = 0


Query: 1   MSSVLKACKGIKALSYGILAHSLATKH--------------------------------- 51
           MSSVLKACKG+KALS G LAHSLATKH                                 
Sbjct: 112 MSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSVFNDI 171

[Close]

BLAST of CsaV3_1G015680 vs. TrEMBL
Match: tr|A0A1S3BQ30|A0A1S3BQ30_CUCME (putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucumis melo OX=3656 GN=LOC103492105 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-04
Identity = 39/93 (41.94%), Postives = 43/93 (46.24%), Query Frame = 0


Query: 1   MSSVLKACKGIKALSYGILAHSLAT----------------------------------- 51
           MSSVLKACKG+KALS G LAHSLAT                                   
Sbjct: 112 MSSVLKACKGMKALSCGALAHSLATKLGIDRSVYVQNALLDMYAASCATMDDALSVFNDI 171

[Close]

BLAST of CsaV3_1G015680 vs. TrEMBL
Match: tr|A0A2N9GTP2|A0A2N9GTP2_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27009 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-04
Identity = 37/93 (39.78%), Postives = 41/93 (44.09%), Query Frame = 0


Query: 1   MSSVLKACKGIKALSYGILAHSLATKH-----------------TC-------------- 51
           +SS LK CKG+KALSYG L H LA KH                 TC              
Sbjct: 44  LSSALKGCKGMKALSYGTLVHGLAIKHGMKESMYVNNALMDMYATCCVSMDEACMVFQEI 103

[Close]

BLAST of CsaV3_1G015680 vs. TrEMBL
Match: tr|A0A2N9H6A4|A0A2N9H6A4_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35175 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-04
Identity = 37/93 (39.78%), Postives = 41/93 (44.09%), Query Frame = 0


Query: 1   MSSVLKACKGIKALSYGILAHSLATKH-----------------TC-------------- 51
           +SS LK CKG+KALSYG L H LA KH                 TC              
Sbjct: 44  LSSALKGCKGMKALSYGTLVHGLAIKHGMKESMYVNNALMDMYATCCVSMDEACMVFQEI 103

The following BLAST results are available for this feature:

BLAST of CsaV3_1G015680 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN65014.1	2.6e-23	100.00	hypothetical protein Csa_1G181270 [Cucumis sativus]	[more]
XP_022931578.1	1.3e-06	45.16	putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita moscha...	[more]
XP_022989366.1	1.3e-06	45.16	putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita maxima...	[more]
XP_023520790.1	1.3e-06	45.16	putative pentatricopeptide repeat-containing protein At1g56570 [Cucurbita pepo s...	[more]
XP_011659402.1	3.7e-06	44.09	PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Cucum...	[more]

BLAST of CsaV3_1G015680 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015680 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_1G015680 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LVR2\|A0A0A0LVR2_CUCSA	1.7e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G181270 PE=4 SV=1	[more]
tr\|A0A0A0LW37\|A0A0A0LW37_CUCSA	2.5e-06	44.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G555630 PE=4 SV=1	[more]
tr\|A0A1S3BQ30\|A0A1S3BQ30_CUCME	1.0e-04	41.94	putative pentatricopeptide repeat-containing protein At1g56570 OS=Cucumis melo O...	[more]
tr\|A0A2N9GTP2\|A0A2N9GTP2_FAGSY	1.0e-04	39.78	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27009 PE=4 SV=1	[more]
tr\|A0A2N9H6A4\|A0A2N9H6A4_FAGSY	1.0e-04	39.78	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS35175 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G015680.1	CsaV3_1G015680.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G015680	CsGy1G015260	Cucumber (Gy14) v2	cgybcucB002

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G015680	Silver-seed gourd	carcucB0056
CsaV3_1G015680	Cucumber (Gy14) v1	cgycucB290
CsaV3_1G015680	Cucurbita maxima (Rimu)	cmacucB0468
CsaV3_1G015680	Cucurbita maxima (Rimu)	cmacucB0476
CsaV3_1G015680	Cucurbita moschata (Rifu)	cmocucB0459
CsaV3_1G015680	Cucurbita pepo (Zucchini)	cpecucB0021
CsaV3_1G015680	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G015680	Bottle gourd (USVL1VR-Ls)	cuclsiB033
CsaV3_1G015680	Bottle gourd (USVL1VR-Ls)	cuclsiB044
CsaV3_1G015680	Melon (DHL92) v3.5.1	cucmeB029
CsaV3_1G015680	Melon (DHL92) v3.6.1	cucmedB025
CsaV3_1G015680	Watermelon (Charleston Gray)	cucwcgB024
CsaV3_1G015680	Watermelon (97103) v1	cucwmB049
CsaV3_1G015680	Watermelon (97103) v2	cucwmbB008
CsaV3_1G015680	Wax gourd	cucwgoB039