CsGy1G014960 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G014960
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 10870870 .. 10873082 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATGCCCCAATTCAATAAAAACTCATAATTAAGTATACCAAAACCTCACCCACAACCAAAAATTCCAGTGAAGGCCAATGATAGCAATGACGACTGACAAAGAATATGTTGCGTTGATACTCAATTAAGGTAGCGATAATTGCTAAACCTTGAGATAGAGTAATGTTGAGAGTTAGAGAGAAAAATCTGACTAGAATTATTGGTGGTTAGACTATCGTAGGGCGAAGAAGATGCCATGGCGATAAGCCGTTTGGTGTTCTCGCGGCAAAGAGGGTAGTAATTTAAAGACAAAAAATAGGGAAAATAGCATCTTTTCTAGTTTTATTAATTCTCCTTTTTATTCCAATTTTAATATTACATTCTACATCCTAAAAAATATTATTATTAATGTGGCCCATGTGCATTATATATTATTTTATTTCTTTCGAACCTATTATTTTATTAGGCATATTAGATAAAAAGATAATGCACTAATTAAACATCATAATAGTTAGTAGAGTGTATAAATAGAACCTTAGGGATTACTCTTTTCACTGTGTTTCATTCAAGTAGTTCACTCTTACCCGTCAAGAAATCTAATTAAGTTGCAAAGAAAGTCAAGTGAGAGAAACACAATTTCTCAGAGATGAGTCATGGATCAAGGTATGTTATTAATTATTTAACGAAGTTTCATTTGTAAAAATCATCTAGTTCAAAGATCTTAGCACTTAATGTTTTATACAATGTTAGAGTTTGTTGTGTAATCAAGAAAATAAAGTTTACCTTCAATAAATTAAGACAAATTTATAAAGATTTTAGAAAGATATTGAGTGATATGACATAAATGCATTTCTTTTCCATTTCTGACCATCTATTAAACTAGGGTTGATTTTATACCTTGTTGTGCTAATACTTTTGATCATTTGTATTAAATGATATAAACTTTTGATCATTTTCTTTTTATGTTTAATATAAGACATATTTTTTAGAGATAATTTAAAAAAAAAAAACTATTTACACTCCATAGAAAAAACTCTACTAAAAGACAAAAATTTAATATACAATTTTCCTATTTTTATATATTATATTATTAAAAAAGAAACAAGAAACAAGAAACGAGAAACCATTACCAAACACATTTTGTTTCAGTTTCGTTTTTCCAATAAACAAAAAATATAAATAGTTATCAAACATATTCATATATCTTGTTTTTGTTTTGAAAAAAGAAACATAAAACAGACAACAAAAACATTATCAAACATTGAAGGAGAGAGTTAATTTTTGTTATCTTCTCACATCTTCCTATATTTAGAGGGTAAACTGGGAAAAGGTAAGAGATATCTTGTATATAGACGATGGTAATATATTTATTACTCATAGACTATGATAGAAAAGATGACAGTCCATTAATATGCTGATAGACTCCTAGAAGTATGTACAAGTATCAATGATAAGATTACAAGTATGTTGGCTATTTTTTATCATAAAATGTGCAATTTTGCTGTACTGTCATAGTAACAAAATTTCATTTCTCAAGGAAAGGAATTGCATTGCATGATTTGATTATAGATTTAATAAACTGGAGACAACATTTGACATTACTACTAATGGAATACCTTTATCCTGTAATAAACGTGGCCTAAGTTCCATTTTACATAGCCTAAATGGGCACAGTTTTACAGATCCAACAGAGATTAAACATCCAAAAAATCAAAACAAAGCAGCAGCAAAAAATCACCAAGTCCTCATCCCTAGAAATGACTCGATATTTATCAATCAAAAAATGGAACTAATATTAAATCGTTAGGCGATGCATAGTTTATACATCGAATCAGCATTCTGTGTCTCATATACAACTGTAAAACCAACATGGGACATCTACATGATGATTCCGACACATGCTAGTAGGTCCTGCCTACCAATGAATAATTACAAAACGACCTATACATATCAATAAAACTAATCAATCTATGAGTATAAACTAATTAACAAAAAATCTGACTGCCCATCACTGGACTATTATTATTTGTTCTTAGTTACCTATTCCATTCTCTATTCTCCCATGAAGAGGCACTTCTGAATTTCAAGGCAGCAACTCTATGCAAACGTACCACCAACTTCACTTCAAAACTTCACTTCAAGCTTCTCGATCCAAAACCAGGTTTACAGCTATCAAATCAAGCGCCATTCCAGAATCTGTTCAATCATTTTTTTCAGCCTTCCGAATAA

mRNA sequence

ATGGGGCGAAGAAGATGCCATGGCGATAAGCCGTTTGGTGTTCTCGCGGCAAAGAGGGTAGCGATGCATAGTTTATACATCGAATCAGCATTCTGTGTCTCATATACAACTGTAAAACCAACATGGGACATCTACATGATGATTCCGACACATGCTAGTAGTTACCTATTCCATTCTCTATTCTCCCATGAAGAGGCACTTCTGAATTTCAAGGCAGCAACTCTATGCAAACGTACCACCAACTTCACTTCAAAACTTCACTTCAAGCTTCTCGATCCAAAACCAGGTTTACAGCTATCAAATCAAGCGCCATTCCAGAATCTGTTCAATCATTTTTTTCAGCCTTCCGAATAA

Coding sequence (CDS)

ATGGGGCGAAGAAGATGCCATGGCGATAAGCCGTTTGGTGTTCTCGCGGCAAAGAGGGTAGCGATGCATAGTTTATACATCGAATCAGCATTCTGTGTCTCATATACAACTGTAAAACCAACATGGGACATCTACATGATGATTCCGACACATGCTAGTAGTTACCTATTCCATTCTCTATTCTCCCATGAAGAGGCACTTCTGAATTTCAAGGCAGCAACTCTATGCAAACGTACCACCAACTTCACTTCAAAACTTCACTTCAAGCTTCTCGATCCAAAACCAGGTTTACAGCTATCAAATCAAGCGCCATTCCAGAATCTGTTCAATCATTTTTTTCAGCCTTCCGAATAA

Protein sequence

MGRRRCHGDKPFGVLAAKRVAMHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSYLFHSLFSHEEALLNFKAATLCKRTTNFTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE
Homology
[Close]
BLAST of CsGy1G014960 vs. NCBI nr
Match: KGN64979.1 (hypothetical protein Csa_1G170520 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 1.1e-47
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 22  MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSYLFHSLFSHEEALLNFKAATLCKRTTN 81
           MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASS LFHSLFSHEEALLNFKAATLCKRTTN
Sbjct: 1   MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSCLFHSLFSHEEALLNFKAATLCKRTTN 60

Query: 82  FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE 118
           FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE
Sbjct: 61  FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE 96

[Close]
BLAST of CsGy1G014960 vs. TrEMBL
Match: tr|A0A0A0LVK6|A0A0A0LVK6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G170520 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 7.0e-48
Identity = 95/96 (98.96%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 22  MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSYLFHSLFSHEEALLNFKAATLCKRTTN 81
           MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASS LFHSLFSHEEALLNFKAATLCKRTTN
Sbjct: 1   MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSCLFHSLFSHEEALLNFKAATLCKRTTN 60

Query: 82  FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE 118
           FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE
Sbjct: 61  FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE 96

The following BLAST results are available for this feature:
BLAST of CsGy1G014960 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64979.11.1e-4798.96hypothetical protein Csa_1G170520 [Cucumis sativus][more]
BLAST of CsGy1G014960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G014960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G014960 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVK6|A0A0A0LVK6_CUCSA7.0e-4898.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G170520 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G014960.1CsGy1G014960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G014960Csa1G170520Cucumber (Chinese Long) v2cgybcuB001
CsGy1G014960CsaV3_1G015320Cucumber (Chinese Long) v3cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G014960Cucurbita maxima (Rimu)cgybcmaB068
CsGy1G014960Cucurbita maxima (Rimu)cgybcmaB078
CsGy1G014960Cucurbita maxima (Rimu)cgybcmaB095
CsGy1G014960Cucurbita maxima (Rimu)cgybcmaB128
CsGy1G014960Cucurbita moschata (Rifu)cgybcmoB072
CsGy1G014960Cucurbita moschata (Rifu)cgybcmoB096
CsGy1G014960Cucurbita moschata (Rifu)cgybcmoB118
CsGy1G014960Cucurbita pepo (Zucchini)cgybcpeB007
CsGy1G014960Cucurbita pepo (Zucchini)cgybcpeB024
CsGy1G014960Cucurbita pepo (Zucchini)cgybcpeB077
CsGy1G014960Cucumber (Chinese Long) v2cgybcuB041
CsGy1G014960Bottle gourd (USVL1VR-Ls)cgyblsiB014
CsGy1G014960Bottle gourd (USVL1VR-Ls)cgyblsiB029
CsGy1G014960Melon (DHL92) v3.5.1cgybmeB016
CsGy1G014960Melon (DHL92) v3.5.1cgybmeB028
CsGy1G014960Melon (DHL92) v3.6.1cgybmedB009
CsGy1G014960Melon (DHL92) v3.6.1cgybmedB015
CsGy1G014960Watermelon (Charleston Gray)cgybwcgB018
CsGy1G014960Watermelon (Charleston Gray)cgybwcgB021
CsGy1G014960Watermelon (97103) v1cgybwmB043
CsGy1G014960Watermelon (97103) v1cgybwmB060
CsGy1G014960Watermelon (97103) v1cgybwmB061
CsGy1G014960Wild cucumber (PI 183967)cgybcpiB001
CsGy1G014960Wild cucumber (PI 183967)cgybcpiB038
CsGy1G014960Silver-seed gourdcarcgybB0408
CsGy1G014960Cucumber (Chinese Long) v3cgybcucB046
CsGy1G014960Watermelon (97103) v2cgybwmbB009
CsGy1G014960Wax gourdcgybwgoB032