CsaV3_1G015320 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G015320
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 10900485 .. 10900903 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATAGTTTATACATCGAATCAGCATTCTGTGTCTCATATACAACTGTAAAACCAACATGGGACATCTACATGATGATTCCGACACATGCTAGTAGGTCCTGCCTACCAATGAATAATTACAAAACGACCTATACATATCAATAAAACTAATCAATCTATGAGTATAAACTAATTAACAAAAAATCTGACTGCCCATCACTGGACTATTATTATTTGTTCTTAGTTGCCTATTCCATTCTCTATTCTCCCATGAAGAGGCACTTCTGAATTTCAAGGCAGCAACTCTATGCAAACGTACCACCAACTTCACTTCAAAACTTCACTTCAAGCTTCTCGATCCAAAACCAGGTTTACAGCTATCAAATCAAGCGCCATTCCAGAATCTGTTCAATCATTTTTTTCAGCCTTCCGAATAA

mRNA sequence

ATGCATAGTTTATACATCGAATCAGCATTCTGTGTCTCATATACAACTGTAAAACCAACATGGGACATCTACATGATGATTCCGACACATGCTAGTAGTTGCCTATTCCATTCTCTATTCTCCCATGAAGAGGCACTTCTGAATTTCAAGGCAGCAACTCTATGCAAACGTACCACCAACTTCACTTCAAAACTTCACTTCAAGCTTCTCGATCCAAAACCAGGTTTACAGCTATCAAATCAAGCGCCATTCCAGAATCTGTTCAATCATTTTTTTCAGCCTTCCGAATAA

Coding sequence (CDS)

ATGCATAGTTTATACATCGAATCAGCATTCTGTGTCTCATATACAACTGTAAAACCAACATGGGACATCTACATGATGATTCCGACACATGCTAGTAGTTGCCTATTCCATTCTCTATTCTCCCATGAAGAGGCACTTCTGAATTTCAAGGCAGCAACTCTATGCAAACGTACCACCAACTTCACTTCAAAACTTCACTTCAAGCTTCTCGATCCAAAACCAGGTTTACAGCTATCAAATCAAGCGCCATTCCAGAATCTGTTCAATCATTTTTTTCAGCCTTCCGAATAA

Protein sequence

MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSCLFHSLFSHEEALLNFKAATLCKRTTNFTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE
Homology
[Close]
BLAST of CsaV3_1G015320 vs. NCBI nr
Match: KGN64979.1 (hypothetical protein Csa_1G170520 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 1.6e-49
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSCLFHSLFSHEEALLNFKAATLCKRTTN 60
          MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSCLFHSLFSHEEALLNFKAATLCKRTTN
Sbjct: 1  MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSCLFHSLFSHEEALLNFKAATLCKRTTN 60

Query: 61 FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE 97
          FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE
Sbjct: 61 FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE 96

[Close]
BLAST of CsaV3_1G015320 vs. TrEMBL
Match: tr|A0A0A0LVK6|A0A0A0LVK6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G170520 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-49
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSCLFHSLFSHEEALLNFKAATLCKRTTN 60
          MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSCLFHSLFSHEEALLNFKAATLCKRTTN
Sbjct: 1  MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSCLFHSLFSHEEALLNFKAATLCKRTTN 60

Query: 61 FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE 97
          FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE
Sbjct: 61 FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE 96

The following BLAST results are available for this feature:
BLAST of CsaV3_1G015320 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64979.11.6e-49100.00hypothetical protein Csa_1G170520 [Cucumis sativus][more]
BLAST of CsaV3_1G015320 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G015320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G015320 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVK6|A0A0A0LVK6_CUCSA1.1e-49100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G170520 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G015320.1CsaV3_1G015320.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G015320CsGy1G014960Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G015320Cucumber (Chinese Long) v3cuccucB053
CsaV3_1G015320Cucumber (Gy14) v1cgycucB496
CsaV3_1G015320Cucurbita maxima (Rimu)cmacucB0253
CsaV3_1G015320Cucurbita maxima (Rimu)cmacucB0476
CsaV3_1G015320Cucurbita maxima (Rimu)cmacucB1004
CsaV3_1G015320Cucurbita moschata (Rifu)cmocucB0239
CsaV3_1G015320Cucurbita moschata (Rifu)cmocucB0472
CsaV3_1G015320Cucurbita pepo (Zucchini)cpecucB0003
CsaV3_1G015320Cucurbita pepo (Zucchini)cpecucB0632
CsaV3_1G015320Wild cucumber (PI 183967)cpicucB001
CsaV3_1G015320Wild cucumber (PI 183967)cpicucB318
CsaV3_1G015320Bottle gourd (USVL1VR-Ls)cuclsiB017
CsaV3_1G015320Bottle gourd (USVL1VR-Ls)cuclsiB033
CsaV3_1G015320Melon (DHL92) v3.5.1cucmeB016
CsaV3_1G015320Melon (DHL92) v3.5.1cucmeB029
CsaV3_1G015320Melon (DHL92) v3.6.1cucmedB015
CsaV3_1G015320Melon (DHL92) v3.6.1cucmedB025
CsaV3_1G015320Watermelon (Charleston Gray)cucwcgB024
CsaV3_1G015320Watermelon (Charleston Gray)cucwcgB029
CsaV3_1G015320Watermelon (97103) v1cucwmB049
CsaV3_1G015320Watermelon (97103) v1cucwmB064
CsaV3_1G015320Watermelon (97103) v2cucwmbB008
CsaV3_1G015320Wax gourdcucwgoB039