Csa1G170520 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G170520
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr1 : 10607051 .. 10607469 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATAGTTTATACATCGAATCAGCATTCTGTGTCTCATATACAACTGTAAAACCAACATGGGACATCTACATGATGATTCCGACACATGCTAGTAGGTCCTGCCTACCAATGAATAATTACAAAACGACCTATACATATCAATAAAACTAATCAATCTATGAGTATAAACTAATTAACAAAAAATCTGACTGCCCATCACTGGACTATTATTATTTGTTCTTAGTTGCCTATTCCATTCTCTATTCTCCCATGAAGAGGCACTTCTGAATTTCAAGGCAGCAACTCTATGCAAACGTACCACCAACTTCACTTCAAAACTTCACTTCAAGCTTCTCGATCCAAAACCAGGTTTACAGCTATCAAATCAAGCGCCATTCCAGAATCTGTTCAATCATTTTTTTCAGCCTTCCGAATAA

mRNA sequence

ATGCATAGTTTATACATCGAATCAGCATTCTGTGTCTCATATACAACTGTAAAACCAACATGGGACATCTACATGATGATTCCGACACATGCTAGTAGTTGCCTATTCCATTCTCTATTCTCCCATGAAGAGGCACTTCTGAATTTCAAGGCAGCAACTCTATGCAAACGTACCACCAACTTCACTTCAAAACTTCACTTCAAGCTTCTCGATCCAAAACCAGGTTTACAGCTATCAAATCAAGCGCCATTCCAGAATCTGTTCAATCATTTTTTTCAGCCTTCCGAATAA

Coding sequence (CDS)

ATGCATAGTTTATACATCGAATCAGCATTCTGTGTCTCATATACAACTGTAAAACCAACATGGGACATCTACATGATGATTCCGACACATGCTAGTAGTTGCCTATTCCATTCTCTATTCTCCCATGAAGAGGCACTTCTGAATTTCAAGGCAGCAACTCTATGCAAACGTACCACCAACTTCACTTCAAAACTTCACTTCAAGCTTCTCGATCCAAAACCAGGTTTACAGCTATCAAATCAAGCGCCATTCCAGAATCTGTTCAATCATTTTTTTCAGCCTTCCGAATAA

Protein sequence

MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSCLFHSLFSHEEALLNFKAATLCKRTTNFTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE*
Homology
[Close]
BLAST of Csa1G170520 vs. TrEMBL
Match: A0A0A0LVK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G170520 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 5.7e-50
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSCLFHSLFSHEEALLNFKAATLCKRTTN 60
          MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSCLFHSLFSHEEALLNFKAATLCKRTTN
Sbjct: 1  MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSCLFHSLFSHEEALLNFKAATLCKRTTN 60

Query: 61 FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE 97
          FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE
Sbjct: 61 FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE 96

[Close]
BLAST of Csa1G170520 vs. NCBI nr
Match: gi|700209883|gb|KGN64979.1| (hypothetical protein Csa_1G170520 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 8.2e-50
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1 

Query: 1  MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSCLFHSLFSHEEALLNFKAATLCKRTTN 60
          MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSCLFHSLFSHEEALLNFKAATLCKRTTN
Sbjct: 1  MHSLYIESAFCVSYTTVKPTWDIYMMIPTHASSCLFHSLFSHEEALLNFKAATLCKRTTN 60

Query: 61 FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE 97
          FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE
Sbjct: 61 FTSKLHFKLLDPKPGLQLSNQAPFQNLFNHFFQPSE 96

The following BLAST results are available for this feature:
BLAST of Csa1G170520 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVK6_CUCSA5.7e-50100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G170520 PE=4 SV=1[more]
BLAST of Csa1G170520 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209883|gb|KGN64979.1|8.2e-50100.00hypothetical protein Csa_1G170520 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU110243cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G170520.1Csa1G170520.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU110243CU110243transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G170520CsGy1G014960Cucumber (Gy14) v2cgybcuB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G170520Melon (DHL92) v3.5.1cumeB004
Csa1G170520Melon (DHL92) v3.5.1cumeB015
Csa1G170520Watermelon (Charleston Gray)cuwcgB022
Csa1G170520Watermelon (97103) v1cuwmB042
Csa1G170520Cucurbita pepo (Zucchini)cpecuB020
Csa1G170520Cucurbita pepo (Zucchini)cpecuB056
Csa1G170520Cucurbita pepo (Zucchini)cpecuB512
Csa1G170520Bottle gourd (USVL1VR-Ls)culsiB032
Csa1G170520Melon (DHL92) v3.6.1cumedB010
Csa1G170520Melon (DHL92) v3.6.1cumedB016
Csa1G170520Watermelon (97103) v2cuwmbB009
Csa1G170520Wax gourdcuwgoB036
Csa1G170520Cucumber (Gy14) v1cgycuB457
Csa1G170520Cucurbita maxima (Rimu)cmacuB210
Csa1G170520Cucurbita maxima (Rimu)cmacuB222
Csa1G170520Cucurbita maxima (Rimu)cmacuB399
Csa1G170520Cucurbita moschata (Rifu)cmocuB206
Csa1G170520Cucurbita moschata (Rifu)cmocuB392