CsGy1G014450 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G014450
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr1 : 10216443 .. 10216724 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGAGCATGGACTGAGAGCAAAGGGAACTGAAGCGAAGTGTAGCGGATCTAGATGGGAGCAGAGGAATGAAGCAGCGCGGAAATGGGCGAGTAAAATCGGAGTGGAGCAAGGTGATATACAGAGCGTCATGGAATTCGTTAGATCTGATTTGAGCAAGTCGAGCAGTTAGATTTGTAAAGGGTGAAAGGGATTAAGTGGTCAGCATGGTCTAGTACGGATAAGTGTTGGTAGAGGGTGGTCGAATGGCCACTTGGGGATGATGGAGAGCGATGGCTAA

mRNA sequence

ATGTCGGAGCATGGACTGAGAGCAAAGGGAACTGAAGCGAAGTGTAGCGGATCTAGATGGGAGCAGAGGAATGAAGCAGCGCGGAAATGGGCGAGTAAAATCGGAGTGGAGCAAGGTGATATACAGAGCGTCATGGAATTCGTTAGATCTGATTTGAGCAAGTCGAGCATACGGATAAGTGTTGGTAGAGGGTGGTCGAATGGCCACTTGGGGATGATGGAGAGCGATGGCTAA

Coding sequence (CDS)

ATGTCGGAGCATGGACTGAGAGCAAAGGGAACTGAAGCGAAGTGTAGCGGATCTAGATGGGAGCAGAGGAATGAAGCAGCGCGGAAATGGGCGAGTAAAATCGGAGTGGAGCAAGGTGATATACAGAGCGTCATGGAATTCGTTAGATCTGATTTGAGCAAGTCGAGCATACGGATAAGTGTTGGTAGAGGGTGGTCGAATGGCCACTTGGGGATGATGGAGAGCGATGGCTAA

Protein sequence

MSEHGLRAKGTEAKCSGSRWEQRNEAARKWASKIGVEQGDIQSVMEFVRSDLSKSSIRISVGRGWSNGHLGMMESDG
Homology
[Close]
BLAST of CsGy1G014450 vs. NCBI nr
Match: KGN64914.1 (hypothetical protein Csa_1G154080 [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 6.2e-20
Identity = 55/74 (74.32%), Postives = 56/74 (75.68%), Query Frame = 0 

Query: 1  MSEHGLRAKGTEAKCSGSRWEQRNEAARKWASKIGVEQGDIQSVMEFVRSDLSKSSIRIS 60
          MSEHGLRAKGTEAKCSGSRWEQRNEAARKWASKIGVEQ                  +RIS
Sbjct: 1  MSEHGLRAKGTEAKCSGSRWEQRNEAARKWASKIGVEQ------------------VRIS 56

Query: 61 VGRGWSNGHLGMME 75
          VGRGWSNGHLGMME
Sbjct: 61 VGRGWSNGHLGMME 56

[Close]
BLAST of CsGy1G014450 vs. TrEMBL
Match: tr|A0A0A0LVD0|A0A0A0LVD0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G154080 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.1e-20
Identity = 55/74 (74.32%), Postives = 56/74 (75.68%), Query Frame = 0 

Query: 1  MSEHGLRAKGTEAKCSGSRWEQRNEAARKWASKIGVEQGDIQSVMEFVRSDLSKSSIRIS 60
          MSEHGLRAKGTEAKCSGSRWEQRNEAARKWASKIGVEQ                  +RIS
Sbjct: 1  MSEHGLRAKGTEAKCSGSRWEQRNEAARKWASKIGVEQ------------------VRIS 56

Query: 61 VGRGWSNGHLGMME 75
          VGRGWSNGHLGMME
Sbjct: 61 VGRGWSNGHLGMME 56

The following BLAST results are available for this feature:
BLAST of CsGy1G014450 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64914.16.2e-2074.32hypothetical protein Csa_1G154080 [Cucumis sativus][more]
BLAST of CsGy1G014450 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy1G014450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy1G014450 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVD0|A0A0A0LVD0_CUCSA4.1e-2074.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G154080 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G014450.1CsGy1G014450.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G014450Csa1G154080Cucumber (Chinese Long) v2cgybcuB001
CsGy1G014450CSPI01G14520Wild cucumber (PI 183967)cgybcpiB001
CsGy1G014450CsaV3_1G014680Cucumber (Chinese Long) v3cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G014450Wax gourdcgybwgoB046
CsGy1G014450Cucurbita maxima (Rimu)cgybcmaB061
CsGy1G014450Cucurbita maxima (Rimu)cgybcmaB092
CsGy1G014450Cucurbita maxima (Rimu)cgybcmaB119
CsGy1G014450Cucurbita maxima (Rimu)cgybcmaB123
CsGy1G014450Cucurbita maxima (Rimu)cgybcmaB139
CsGy1G014450Cucurbita moschata (Rifu)cgybcmoB057
CsGy1G014450Cucurbita moschata (Rifu)cgybcmoB113
CsGy1G014450Cucurbita moschata (Rifu)cgybcmoB130
CsGy1G014450Cucurbita pepo (Zucchini)cgybcpeB076
CsGy1G014450Cucurbita pepo (Zucchini)cgybcpeB082
CsGy1G014450Cucurbita pepo (Zucchini)cgybcpeB150
CsGy1G014450Bottle gourd (USVL1VR-Ls)cgyblsiB005
CsGy1G014450Bottle gourd (USVL1VR-Ls)cgyblsiB017
CsGy1G014450Bottle gourd (USVL1VR-Ls)cgyblsiB041
CsGy1G014450Melon (DHL92) v3.5.1cgybmeB010
CsGy1G014450Melon (DHL92) v3.5.1cgybmeB061
CsGy1G014450Melon (DHL92) v3.6.1cgybmedB009
CsGy1G014450Watermelon (Charleston Gray)cgybwcgB023
CsGy1G014450Watermelon (Charleston Gray)cgybwcgB027
CsGy1G014450Watermelon (97103) v1cgybwmB007
CsGy1G014450Watermelon (97103) v1cgybwmB043
CsGy1G014450Watermelon (97103) v1cgybwmB067
CsGy1G014450Silver-seed gourdcarcgybB0904
CsGy1G014450Watermelon (97103) v2cgybwmbB009
CsGy1G014450Watermelon (97103) v2cgybwmbB026