CsaV3_1G014680 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G014680
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 10236083 .. 10236416 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGAGCATGGACTGAGAGCAAAGGGAACTGAAGCGAAGTGTAGCGGATCTAGATGGGAGCAGAGGAATGAAGCAGCGCGGAAATGGGCGAGTAAAATCGGAGTGGAGCAAGGTTGATATACAGAGCGTCATGGAATTCGTTAGATCTGATTTGAGCAAGTCGAGCAGTTAGATTTGTAAAGGGTGAAAGGGATTGAGTGGTCAGCATGGTCTAGTACGGATAAGTGTTGGTAGAGGGTGGTCGAATGGCCACTTGGGGATGATGGAGGAGCGATGGCTAAGTCAAAACTTGGGGCTATCATACTACCTGGGTTTGTATTTTAGTGATTGA

mRNA sequence

ATGTCGGAGCATGGACTGAGAGCAAAGGGAACTGAAGCGAAGTGTAGCGGATCTAGATGGGAGCAGAGGAATGAAGCAGCGCGGAAATGGGCGAGTAAAATCGGAGTGGAGCAAGTACGGATAAGTGTTGGTAGAGGGTGGTCGAATGGCCACTTGGGGATGATGGAGGAGCGATGGCTAAGTCAAAACTTGGGGCTATCATACTACCTGGGTTTGTATTTTAGTGATTGA

Coding sequence (CDS)

ATGTCGGAGCATGGACTGAGAGCAAAGGGAACTGAAGCGAAGTGTAGCGGATCTAGATGGGAGCAGAGGAATGAAGCAGCGCGGAAATGGGCGAGTAAAATCGGAGTGGAGCAAGTACGGATAAGTGTTGGTAGAGGGTGGTCGAATGGCCACTTGGGGATGATGGAGGAGCGATGGCTAAGTCAAAACTTGGGGCTATCATACTACCTGGGTTTGTATTTTAGTGATTGA

Protein sequence

MSEHGLRAKGTEAKCSGSRWEQRNEAARKWASKIGVEQVRISVGRGWSNGHLGMMEERWLSQNLGLSYYLGLYFSD
Homology
[Close]
BLAST of CsaV3_1G014680 vs. NCBI nr
Match: KGN64914.1 (hypothetical protein Csa_1G154080 [Cucumis sativus])

HSP 1 Score: 159.8 bits (403), Expect = 3.6e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MSEHGLRAKGTEAKCSGSRWEQRNEAARKWASKIGVEQVRISVGRGWSNGHLGMMEERWL 60
          MSEHGLRAKGTEAKCSGSRWEQRNEAARKWASKIGVEQVRISVGRGWSNGHLGMMEERWL
Sbjct: 1  MSEHGLRAKGTEAKCSGSRWEQRNEAARKWASKIGVEQVRISVGRGWSNGHLGMMEERWL 60

Query: 61 SQNLGLSYYLGLYFSD 77
          SQNLGLSYYLGLYFSD
Sbjct: 61 SQNLGLSYYLGLYFSD 76

[Close]
BLAST of CsaV3_1G014680 vs. TrEMBL
Match: tr|A0A0A0LVD0|A0A0A0LVD0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G154080 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.4e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MSEHGLRAKGTEAKCSGSRWEQRNEAARKWASKIGVEQVRISVGRGWSNGHLGMMEERWL 60
          MSEHGLRAKGTEAKCSGSRWEQRNEAARKWASKIGVEQVRISVGRGWSNGHLGMMEERWL
Sbjct: 1  MSEHGLRAKGTEAKCSGSRWEQRNEAARKWASKIGVEQVRISVGRGWSNGHLGMMEERWL 60

Query: 61 SQNLGLSYYLGLYFSD 77
          SQNLGLSYYLGLYFSD
Sbjct: 61 SQNLGLSYYLGLYFSD 76

The following BLAST results are available for this feature:
BLAST of CsaV3_1G014680 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64914.13.6e-36100.00hypothetical protein Csa_1G154080 [Cucumis sativus][more]
BLAST of CsaV3_1G014680 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G014680 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVD0|A0A0A0LVD0_CUCSA2.4e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G154080 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G014680.1CsaV3_1G014680.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G014680CSPI01G14520Wild cucumber (PI 183967)cpicucB001
CsaV3_1G014680CsGy1G014450Cucumber (Gy14) v2cgybcucB002
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G014680Wax gourdcucwgoB051
CsaV3_1G014680Cucumber (Chinese Long) v3cuccucB046
CsaV3_1G014680Cucumber (Gy14) v1cgycucB322
CsaV3_1G014680Cucurbita maxima (Rimu)cmacucB0234
CsaV3_1G014680Cucurbita maxima (Rimu)cmacucB0473
CsaV3_1G014680Cucurbita maxima (Rimu)cmacucB0694
CsaV3_1G014680Cucurbita maxima (Rimu)cmacucB0962
CsaV3_1G014680Cucurbita moschata (Rifu)cmocucB0221
CsaV3_1G014680Cucurbita moschata (Rifu)cmocucB0951
CsaV3_1G014680Cucurbita pepo (Zucchini)cpecucB0631
CsaV3_1G014680Cucurbita pepo (Zucchini)cpecucB0635
CsaV3_1G014680Cucurbita pepo (Zucchini)cpecucB1044
CsaV3_1G014680Bottle gourd (USVL1VR-Ls)cuclsiB005
CsaV3_1G014680Bottle gourd (USVL1VR-Ls)cuclsiB021
CsaV3_1G014680Bottle gourd (USVL1VR-Ls)cuclsiB048
CsaV3_1G014680Melon (DHL92) v3.5.1cucmeB010
CsaV3_1G014680Melon (DHL92) v3.5.1cucmeB072
CsaV3_1G014680Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G014680Watermelon (Charleston Gray)cucwcgB026
CsaV3_1G014680Watermelon (Charleston Gray)cucwcgB030
CsaV3_1G014680Watermelon (97103) v1cucwmB009
CsaV3_1G014680Watermelon (97103) v1cucwmB049
CsaV3_1G014680Watermelon (97103) v1cucwmB074
CsaV3_1G014680Watermelon (97103) v2cucwmbB008
CsaV3_1G014680Watermelon (97103) v2cucwmbB025