CsGy1G012510 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G012510
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Uncharacterized protein
Location	Chr1 : 7928507 .. 7929614 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAATGCAAAGAGGGTGATACCCTTTTTGGAAGAAAGCCACAGGGAGGAAGCAAATAATAATAATAACAATAATATCATAGAGAAGATGAGAGTTGAAAACAATATTATGGGAACCAAAGATTCATCTTCATCTTCTTCTTCTTCCATGGAAACTAATTGCTCTCCATTTCATTTTCATTCAAACTTCAGGTATTCTTCTTCTTTTCTTTTTATATTTCTTCATTACAATATTTCCTTTTTTCTTTCATTTTAATTGAAGTTTTTTTGTTTTTTTTATTTTTTGTTGGTTTTAAGATTTGGTTTAACAATTTTTAGAAAGTGGATTATTATGTGCAATAAACATAAGTGTTAAATAGGACAGGCTAGATTATTATCAACCAAATCTTTATACAAAATATATCCCCGTTTTTGGAGGTCTTAAAATTATTGTTTCTTTAGTCTTTAAAAATGTTGATTTAGAACTCAAAAATCATTTTGTATGTGTGTATATATAATTTAGAAAATTTAAAAAAAATGTAAATTTGGGTTTTTTTATAAGAAGATTAGTGTAGTTGAGCTAATATAATGTTTTAAGTTATAGATATCAACTTTGGTTCAATTTTACATGTATTAAGAAAATGAAATTTGAAAATGAGTAAGTTTCACTTTATTAAAATCTCTAAAAATCGTATAAATTCAAATATAGATTAATATAACAAAATGAGTTTTTAGTTCACCAACACGTAAGAGAAGTTCTAACATCTTCTCTTCAATAATCTTGAATGTCTAAACTAGTTAAGGTCGTTATGTTCTTCACGTTATTGTCACTCATTATCCATATGATAATTGTTTACTATTATTATTTTGATTATAATTAATTTTGGTATTGTTATTGTGTTACAAAATGTAGAGGTACAAAAAGGGGTTTAGGAGGCCAATCAAGGATGAGTAACACAAAAAGAAGTGGAAGGTATCAATTAGGAGATCAAGAAAGCAATTTGATGGCATTAGGATCTTCATCTTCCTCAGCTCCAAATGAAATTCCAACCTTCAATATTTTCCATCTCCCCCAAGTAAATATCTCTAAATTTTCATCTTCATACTTCTTCAAGACTTTTCTTTAA

mRNA sequence

ATGGTGAATGCAAAGAGGGTGATACCCTTTTTGGAAGAAAGCCACAGGGAGGAAGCAAATAATAATAATAACAATAATATCATAGAGAAGATGAGAGTTGAAAACAATATTATGGGAACCAAAGATTCATCTTCATCTTCTTCTTCTTCCATGGAAACTAATTGCTCTCCATTTCATTTTCATTCAAACTTCAGAGGTACAAAAAGGGGTTTAGGAGGCCAATCAAGGATGAGTAACACAAAAAGAAGTGGAAGGTATCAATTAGGAGATCAAGAAAGCAATTTGATGGCATTAGGATCTTCATCTTCCTCAGCTCCAAATGAAATTCCAACCTTCAATATTTTCCATCTCCCCCAAGTAAATATCTCTAAATTTTCATCTTCATACTTCTTCAAGACTTTTCTTTAA

Coding sequence (CDS)

ATGGTGAATGCAAAGAGGGTGATACCCTTTTTGGAAGAAAGCCACAGGGAGGAAGCAAATAATAATAATAACAATAATATCATAGAGAAGATGAGAGTTGAAAACAATATTATGGGAACCAAAGATTCATCTTCATCTTCTTCTTCTTCCATGGAAACTAATTGCTCTCCATTTCATTTTCATTCAAACTTCAGAGGTACAAAAAGGGGTTTAGGAGGCCAATCAAGGATGAGTAACACAAAAAGAAGTGGAAGGTATCAATTAGGAGATCAAGAAAGCAATTTGATGGCATTAGGATCTTCATCTTCCTCAGCTCCAAATGAAATTCCAACCTTCAATATTTTCCATCTCCCCCAAGTAAATATCTCTAAATTTTCATCTTCATACTTCTTCAAGACTTTTCTTTAA

Protein sequence

MVNAKRVIPFLEESHREEANNNNNNNIIEKMRVENNIMGTKDSSSSSSSSMETNCSPFHFHSNFRGTKRGLGGQSRMSNTKRSGRYQLGDQESNLMALGSSSSSAPNEIPTFNIFHLPQVNISKFSSSYFFKTFL

Homology

[Close]

BLAST of CsGy1G012510 vs. NCBI nr
Match: KGN64713.1 (hypothetical protein Csa_1G077140 [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 3.6e-31
Identity = 116/119 (97.48%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MVNAKRVIPFLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETNCSPFHF 60
           MVNAKRVIPF   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETNCSPFHF
Sbjct: 206 MVNAKRVIPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETNCSPFHF 265

Query: 61  HSNFRGTKRGLGGQSRMSNTKRSGRYQLGDQESNLMALGSSSSSAPNEIPTFNIFHLPQ 120
           HSNFRGTKRGLGGQSRMSNTKRSGRYQLGDQESNLMALGSSSSSAPNEIPTFNIFHLPQ
Sbjct: 266 HSNFRGTKRGLGGQSRMSNTKRSGRYQLGDQESNLMALGSSSSSAPNEIPTFNIFHLPQ 324

[Close]

BLAST of CsGy1G012510 vs. NCBI nr
Match: XP_008443003.1 (PREDICTED: uncharacterized protein DDB_G0271670-like [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 1.1e-24
Identity = 109/124 (87.90%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 1   MVNAKRVIPFLE-----EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETNC 60
           MVNAKRVIPFLE      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE NC
Sbjct: 203 MVNAKRVIPFLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEINC 262

Query: 61  SPFHFHSNFRGTKRGLGGQSRMSNTKRSGRYQLGDQESNLMALGSSSSSAPNEIPTFNIF 120
           SPFH HSNFRGTKRG  GQ   +NTKRSGRYQLGDQESNLMALGSSSSSAPNEIPTFNIF
Sbjct: 263 SPFHSHSNFRGTKRGSAGQLMKNNTKRSGRYQLGDQESNLMALGSSSSSAPNEIPTFNIF 322

[Close]

BLAST of CsGy1G012510 vs. NCBI nr
Match: XP_023001726.1 (trinucleotide repeat-containing gene 18 protein-like [Cucurbita maxima] >XP_023001727.1 trinucleotide repeat-containing gene 18 protein-like [Cucurbita maxima])

HSP 1 Score: 62.0 bits (149), Expect = 1.8e-06
Identity = 40/64 (62.50%), Postives = 46/64 (71.88%), Query Frame = 0


Query: 54  NCSPFHFHSNFRGTKRGLGGQSRMSNTKRSGRYQLGDQESNLMALGSSSSSAPNEI-PTF 113
           N SPF+  SN RGTKRG GG+  M  +KRS RYQL  + S+LMALG SSSSAPNE+   F
Sbjct: 248 NRSPFNLDSNSRGTKRGFGGE-LMRCSKRSERYQLAGEVSHLMALG-SSSSAPNEVAAAF 307

Query: 114 NIFH 117
           NI H
Sbjct: 308 NIHH 309

[Close]

BLAST of CsGy1G012510 vs. NCBI nr
Match: XP_022927210.1 (nuclear envelope pore membrane protein POM 121-like [Cucurbita moschata] >XP_022927212.1 nuclear envelope pore membrane protein POM 121-like [Cucurbita moschata] >XP_022927213.1 nuclear envelope pore membrane protein POM 121-like [Cucurbita moschata])

HSP 1 Score: 54.7 bits (130), Expect = 2.9e-04
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 62  SNFRGTKRGLGGQSRMSNTKRSGRYQLGDQESNLMALGSSSSSAPNEI-PTFNIFH 117
           SN RGTKRG GG+  M  +KRS RYQL  + S+LMALG SSSSAPNE+   FNI H
Sbjct: 256 SNSRGTKRGFGGE-LMRCSKRSERYQLAGEVSHLMALG-SSSSAPNEVAAAFNIHH 309

[Close]

BLAST of CsGy1G012510 vs. NCBI nr
Match: XP_023520013.1 (uncharacterized protein LOC111783325 [Cucurbita pepo subsp. pepo] >XP_023520014.1 uncharacterized protein LOC111783325 [Cucurbita pepo subsp. pepo] >XP_023520016.1 uncharacterized protein LOC111783325 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.7 bits (130), Expect = 2.9e-04
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 0


Query: 62  SNFRGTKRGLGGQSRMSNTKRSGRYQLGDQESNLMALGSSSSSAPNEI-PTFNIFH 117
           SN RGTKRG GG+  M  +KRS RYQL  + S+LMALG SSSSAPNE+   FNI H
Sbjct: 254 SNSRGTKRGFGGE-LMRCSKRSERYQLAGEVSHLMALG-SSSSAPNEVAAAFNIHH 307

[Close]

BLAST of CsGy1G012510 vs. TrEMBL
Match: tr|A0A0A0LSF6|A0A0A0LSF6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077140 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.4e-31
Identity = 116/119 (97.48%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MVNAKRVIPFLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETNCSPFHF 60
           MVNAKRVIPF   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETNCSPFHF
Sbjct: 206 MVNAKRVIPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETNCSPFHF 265

Query: 61  HSNFRGTKRGLGGQSRMSNTKRSGRYQLGDQESNLMALGSSSSSAPNEIPTFNIFHLPQ 120
           HSNFRGTKRGLGGQSRMSNTKRSGRYQLGDQESNLMALGSSSSSAPNEIPTFNIFHLPQ
Sbjct: 266 HSNFRGTKRGLGGQSRMSNTKRSGRYQLGDQESNLMALGSSSSSAPNEIPTFNIFHLPQ 324

[Close]

BLAST of CsGy1G012510 vs. TrEMBL
Match: tr|A0A1S3B6J8|A0A1S3B6J8_CUCME (uncharacterized protein DDB_G0271670-like OS=Cucumis melo OX=3656 GN=LOC103486731 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.4e-25
Identity = 109/124 (87.90%), Postives = 111/124 (89.52%), Query Frame = 0


Query: 1   MVNAKRVIPFLE-----EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETNC 60
           MVNAKRVIPFLE      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE NC
Sbjct: 203 MVNAKRVIPFLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEINC 262

Query: 61  SPFHFHSNFRGTKRGLGGQSRMSNTKRSGRYQLGDQESNLMALGSSSSSAPNEIPTFNIF 120
           SPFH HSNFRGTKRG  GQ   +NTKRSGRYQLGDQESNLMALGSSSSSAPNEIPTFNIF
Sbjct: 263 SPFHSHSNFRGTKRGSAGQLMKNNTKRSGRYQLGDQESNLMALGSSSSSAPNEIPTFNIF 322

The following BLAST results are available for this feature:

BLAST of CsGy1G012510 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64713.1	3.6e-31	97.48	hypothetical protein Csa_1G077140 [Cucumis sativus]	[more]
XP_008443003.1	1.1e-24	87.90	PREDICTED: uncharacterized protein DDB_G0271670-like [Cucumis melo]	[more]
XP_023001726.1	1.8e-06	62.50	trinucleotide repeat-containing gene 18 protein-like [Cucurbita maxima] >XP_0230...	[more]
XP_022927210.1	2.9e-04	64.29	nuclear envelope pore membrane protein POM 121-like [Cucurbita moschata] >XP_022...	[more]
XP_023520013.1	2.9e-04	64.29	uncharacterized protein LOC111783325 [Cucurbita pepo subsp. pepo] >XP_023520014....	[more]

BLAST of CsGy1G012510 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy1G012510 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy1G012510 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSF6\|A0A0A0LSF6_CUCSA	2.4e-31	97.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G077140 PE=4 SV=1	[more]
tr\|A0A1S3B6J8\|A0A1S3B6J8_CUCME	7.4e-25	87.90	uncharacterized protein DDB_G0271670-like OS=Cucumis melo OX=3656 GN=LOC10348673...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G012510.1	CsGy1G012510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 16..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..61

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G012510	Cla019686	Watermelon (97103) v1	cgybwmB025
CsGy1G012510	Csa1G077140	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G012510	ClCG03G007900	Watermelon (Charleston Gray)	cgybwcgB045
CsGy1G012510	CSPI01G12470	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G012510	CmaCh13G006170	Cucurbita maxima (Rimu)	cgybcmaB074
CsGy1G012510	Cp4.1LG20g04610	Cucurbita pepo (Zucchini)	cgybcpeB070
CsGy1G012510	MELO3C002635.2	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G012510	CsaV3_1G012670	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G012510	Cla97C03G059180	Watermelon (97103) v2	cgybwmbB043
CsGy1G012510	Bhi08G001852	Wax gourd	cgybwgoB049
CsGy1G012510	Carg21523	Silver-seed gourd	carcgybB0936

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G012510	Cucumber (Gy14) v2	cgybcgybB025
CsGy1G012510	Cucurbita moschata (Rifu)	cgybcmoB068
CsGy1G012510	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G012510	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G012510	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G012510	Cucumber (Chinese Long) v3	cgybcucB034
CsGy1G012510	Watermelon (97103) v2	cgybwmbB024