CsGy1G009720 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G009720
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Thylakoid ADP,ATP carrier protein, chloroplastic
Location	Chr1 : 6025138 .. 6025416 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGACATATCCATTAGAAGTTTTGAGGTTACACATGGCAGTTGACCCTGGGTTTCGAGCAACATCCAAGGTTTGTTTACTTTTGCCCTACCTATATCTGAAAATTGAAAAACCAATCATCAATTGTACTTTAGTATGGACAATTATTGGTTTCTAGATTGCCTCAAGTATGCTACGAGAGGAAGGCATTACATCTTTTACTACAGTGGTCTTGGACCGTCTCTTTTCTGCAGAGCTCCTTACATTGCCTGTTGTGAACCTTTGCATTTTTCACTTATAG

mRNA sequence

GTGACATATCCATTAGAAGTTTTGAGGTTACACATGGCAGTTGACCCTGGGTTTCGAGCAACATCCAAGATTGCCTCAAGTATGCTACGAGAGGAAGGCATTACATCTTTTACTACAGTGGTCTTGGACCGTCTCTTTTCTGCAGAGCTCCTTACATTGCCTGTTGTGAACCTTTGCATTTTTCACTTATAG

Coding sequence (CDS)

GTGACATATCCATTAGAAGTTTTGAGGTTACACATGGCAGTTGACCCTGGGTTTCGAGCAACATCCAAGATTGCCTCAAGTATGCTACGAGAGGAAGGCATTACATCTTTTACTACAGTGGTCTTGGACCGTCTCTTTTCTGCAGAGCTCCTTACATTGCCTGTTGTGAACCTTTGCATTTTTCACTTATAG

Protein sequence

VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCIFHL

Homology

[Close]

BLAST of CsGy1G009720 vs. NCBI nr
Match: KGN64423.1 (hypothetical protein Csa_1G051610 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
          VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPV+   +
Sbjct: 29 VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVLASVM 88

Query: 61 FH 63
          F+
Sbjct: 89 FY 90

[Close]

BLAST of CsGy1G009720 vs. NCBI nr
Match: XP_008442426.1 (PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X1 [Cucumis melo] >ADN33798.1 ADPATP carrier protein [Cucumis melo subsp. melo])

HSP 1 Score: 65.5 bits (158), Expect = 7.5e-08
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF   +     VN CI
Sbjct: 209 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFG--IAPYIAVNFCI 268

Query: 61  FHL 64
           F L
Sbjct: 269 FDL 269

[Close]

BLAST of CsGy1G009720 vs. NCBI nr
Match: XP_004137723.1 (PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X1 [Cucumis sativus] >KGN58762.1 hypothetical protein Csa_3G731730 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 7.5e-08
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF   +     VN CI
Sbjct: 209 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFG--IAPYIAVNFCI 268

Query: 61  FHL 64
           F L
Sbjct: 269 FDL 269

[Close]

BLAST of CsGy1G009720 vs. NCBI nr
Match: XP_011651862.1 (PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 7.5e-08
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF   +     VN CI
Sbjct: 188 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFG--IAPYIAVNFCI 247

Query: 61  FHL 64
           F L
Sbjct: 248 FDL 248

[Close]

BLAST of CsGy1G009720 vs. NCBI nr
Match: XP_016899747.1 (PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 7.5e-08
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF   +     VN CI
Sbjct: 188 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFG--IAPYIAVNFCI 247

Query: 61  FHL 64
           F L
Sbjct: 248 FDL 248

[Close]

BLAST of CsGy1G009720 vs. TAIR10
Match: AT5G01500.1 (thylakoid ATP/ADP carrier)

HSP 1 Score: 56.2 bits (134), Expect = 8.3e-09
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           +TYPL+VLRL +AV+PG+R  S++A +MLREEG+ SF   +   L S  +     +N C+
Sbjct: 232 ITYPLDVLRLRLAVEPGYRTMSQVALNMLREEGVASFYNGLGPSLLS--IAPYIAINFCV 291

Query: 61  FHL 64
           F L
Sbjct: 292 FDL 292

[Close]

BLAST of CsGy1G009720 vs. TAIR10
Match: AT3G51870.1 (Mitochondrial substrate carrier family protein)

HSP 1 Score: 53.9 bits (128), Expect = 4.1e-08
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           +TYPL+VLRL +AV+PG+R  S++A SMLR+EGI SF   +   L    +     VN CI
Sbjct: 204 LTYPLDVLRLRLAVEPGYRTMSQVALSMLRDEGIASFYYGLGPSLVG--IAPYIAVNFCI 263

Query: 61  FHL 64
           F L
Sbjct: 264 FDL 264

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BLAST of CsGy1G009720 vs. Swiss-Prot
Match: sp|Q9M024|TAAC_ARATH (Thylakoid ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TAAC PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-07
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           +TYPL+VLRL +AV+PG+R  S++A +MLREEG+ SF   +   L S  +     +N C+
Sbjct: 232 ITYPLDVLRLRLAVEPGYRTMSQVALNMLREEGVASFYNGLGPSLLS--IAPYIAINFCV 291

Query: 61  FHL 64
           F L
Sbjct: 292 FDL 292

[Close]

BLAST of CsGy1G009720 vs. Swiss-Prot
Match: sp|O65023|EAAC_ARATH (Probable envelope ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EAAC PE=2 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 7.4e-07
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           +TYPL+VLRL +AV+PG+R  S++A SMLR+EGI SF   +   L    +     VN CI
Sbjct: 204 LTYPLDVLRLRLAVEPGYRTMSQVALSMLRDEGIASFYYGLGPSLVG--IAPYIAVNFCI 263

Query: 61  FHL 64
           F L
Sbjct: 264 FDL 264

[Close]

BLAST of CsGy1G009720 vs. TrEMBL
Match: tr|A0A0A0LRL6|A0A0A0LRL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051610 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
          VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPV+   +
Sbjct: 29 VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVLASVM 88

Query: 61 FH 63
          F+
Sbjct: 89 FY 90

[Close]

BLAST of CsGy1G009720 vs. TrEMBL
Match: tr|A0A1S4DUT0|A0A1S4DUT0_CUCME (probable envelope ADP,ATP carrier protein, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486300 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-08
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF   +     VN CI
Sbjct: 188 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFG--IAPYIAVNFCI 247

Query: 61  FHL 64
           F L
Sbjct: 248 FDL 248

[Close]

BLAST of CsGy1G009720 vs. TrEMBL
Match: tr|A0A1S3B567|A0A1S3B567_CUCME (probable envelope ADP,ATP carrier protein, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486300 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-08
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF   +     VN CI
Sbjct: 209 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFG--IAPYIAVNFCI 268

Query: 61  FHL 64
           F L
Sbjct: 269 FDL 269

[Close]

BLAST of CsGy1G009720 vs. TrEMBL
Match: tr|E5GBF7|E5GBF7_CUCME (ADPATP carrier protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-08
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF   +     VN CI
Sbjct: 209 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFG--IAPYIAVNFCI 268

Query: 61  FHL 64
           F L
Sbjct: 269 FDL 269

[Close]

BLAST of CsGy1G009720 vs. TrEMBL
Match: tr|A0A0A0LDF0|A0A0A0LDF0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731730 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-08
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF   +     VN CI
Sbjct: 209 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFG--IAPYIAVNFCI 268

Query: 61  FHL 64
           F L
Sbjct: 269 FDL 269

The following BLAST results are available for this feature:

BLAST of CsGy1G009720 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64423.1	2.3e-20	90.32	hypothetical protein Csa_1G051610 [Cucumis sativus]	[more]
XP_008442426.1	7.5e-08	60.32	PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X1 [...	[more]
XP_004137723.1	7.5e-08	60.32	PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X1 [...	[more]
XP_011651862.1	7.5e-08	60.32	PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X2 [...	[more]
XP_016899747.1	7.5e-08	60.32	PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X2 [...	[more]

BLAST of CsGy1G009720 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G01500.1	8.3e-09	46.03	thylakoid ATP/ADP carrier	[more]
AT3G51870.1	4.1e-08	49.21	Mitochondrial substrate carrier family protein	[more]

BLAST of CsGy1G009720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M024\|TAAC_ARATH	1.5e-07	46.03	Thylakoid ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
sp\|O65023\|EAAC_ARATH	7.4e-07	49.21	Probable envelope ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of CsGy1G009720 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRL6\|A0A0A0LRL6_CUCSA	1.5e-20	90.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051610 PE=4 SV=1	[more]
tr\|A0A1S4DUT0\|A0A1S4DUT0_CUCME	5.0e-08	60.32	probable envelope ADP,ATP carrier protein, chloroplastic isoform X2 OS=Cucumis m...	[more]
tr\|A0A1S3B567\|A0A1S3B567_CUCME	5.0e-08	60.32	probable envelope ADP,ATP carrier protein, chloroplastic isoform X1 OS=Cucumis m...	[more]
tr\|E5GBF7\|E5GBF7_CUCME	5.0e-08	60.32	ADPATP carrier protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
tr\|A0A0A0LDF0\|A0A0A0LDF0_CUCSA	5.0e-08	60.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731730 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G009720.1	CsGy1G009720.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24089:SF619	SUBFAMILY NOT NAMED	coord: 1..63
None	No IPR available	PANTHER	PTHR24089	FAMILY NOT NAMED	coord: 1..63

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G009720	Csa1G051610	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G009720	CSPI01G09680	Wild cucumber (PI 183967)	cgybcpiB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G009720	Cucumber (Gy14) v2	cgybcgybB005
CsGy1G009720	Cucurbita maxima (Rimu)	cgybcmaB025
CsGy1G009720	Cucurbita maxima (Rimu)	cgybcmaB049
CsGy1G009720	Cucurbita maxima (Rimu)	cgybcmaB063
CsGy1G009720	Cucurbita maxima (Rimu)	cgybcmaB093
CsGy1G009720	Cucurbita moschata (Rifu)	cgybcmoB026
CsGy1G009720	Cucurbita moschata (Rifu)	cgybcmoB046
CsGy1G009720	Cucurbita moschata (Rifu)	cgybcmoB058
CsGy1G009720	Cucurbita moschata (Rifu)	cgybcmoB082
CsGy1G009720	Cucurbita pepo (Zucchini)	cgybcpeB018
CsGy1G009720	Cucurbita pepo (Zucchini)	cgybcpeB049
CsGy1G009720	Cucurbita pepo (Zucchini)	cgybcpeB080
CsGy1G009720	Cucurbita pepo (Zucchini)	cgybcpeB123
CsGy1G009720	Cucumber (Chinese Long) v2	cgybcuB014
CsGy1G009720	Bottle gourd (USVL1VR-Ls)	cgyblsiB018
CsGy1G009720	Bottle gourd (USVL1VR-Ls)	cgyblsiB064
CsGy1G009720	Melon (DHL92) v3.5.1	cgybmeB022
CsGy1G009720	Melon (DHL92) v3.5.1	cgybmeB046
CsGy1G009720	Melon (DHL92) v3.6.1	cgybmedB020
CsGy1G009720	Melon (DHL92) v3.6.1	cgybmedB041
CsGy1G009720	Watermelon (Charleston Gray)	cgybwcgB033
CsGy1G009720	Watermelon (Charleston Gray)	cgybwcgB069
CsGy1G009720	Watermelon (97103) v1	cgybwmB010
CsGy1G009720	Watermelon (97103) v1	cgybwmB087
CsGy1G009720	Wild cucumber (PI 183967)	cgybcpiB013
CsGy1G009720	Silver-seed gourd	carcgybB0373
CsGy1G009720	Silver-seed gourd	carcgybB0500
CsGy1G009720	Silver-seed gourd	carcgybB0989
CsGy1G009720	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G009720	Cucumber (Chinese Long) v3	cgybcucB010
CsGy1G009720	Watermelon (97103) v2	cgybwmbB032
CsGy1G009720	Watermelon (97103) v2	cgybwmbB070
CsGy1G009720	Wax gourd	cgybwgoB029