Csa1G051610 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G051610
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	ADP,ATP carrier protein, putative; contains IPR023395 (Mitochondrial carrier domain)
Location	Chr1 : 6021173 .. 6022383 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGAAAGCTGATTGTCCGGAAATCACTTTTTCCTATTTCATCATCACCCAACCTCAAGGACCCCTATGGCTGCCATTTGGTTTTCCTTTTTTTCTTTTTTCTTAAATTAAGTCTATAAACACTCATTCTACCTTTAGTTATCTGTTCCAGAGTTACATTATATTTTAGTTTGACTTCTTGTATATTATTAATTTGGTACATTTCTATGTTTTATTTGCACAAAAGTATAAGTTCTTTTTATAACGATAGATAACTTCTTTGTTTATCCAGTTATTTGACAAGCATTAATTTCTAATTCTTATTAATTTTTCTTTGTTAGCAAGGGGCGCTCAACAGGTAAAAATATTTTACTTCTTTTGATGGATTTATTTTTCTTTTAGTTTCTCCTCCAACATTTTCTTTCTTTTTCTACTTTTCTAAAGTAGATTATTAAATTTTATATCTTGGAATCTTAGTAGAAGTTGTTTGTTTTTGCAGTATGGGTGATTTTTTTTTGCCCATTCTATTCTCTTACTTCTCTTTTCTTTTTGGTTCATATATTTATTAGTTTAGGGTTTGAGTTGTGATACAACCCTCAAAATTAAAGGATAAAAATTGATATTTAGCTAAGTTAATAACTCTTCTTCCTCAATTTGAATTTTCTTCTGGGAGGATTTTCAGAATGTAAAAAAGAAAGAAGAAGAAAGGATTCTGATAACGACTTTTCAATTTTGGCTTACCACCTTTATCTCTATAGGTGACATATCCATTAGAAGTTTTGAGGTTACACATGGCAGTTGACCCTGGGTTTCGAGCAACATCCAAGGTTTGTTTACTTTTGCCCTACCTATATCTGAAAATTGAAAAACCAATCATCAATTGTACTTTAGTATGGACAATTATTGGTTTCTAGATTGCCTCAAGTATGCTACGAGAGGAAGGCATTACATCTTTTACTACAGTGGTCTTGGACCGTCTCTTTTCTGCAGAGCTCCTTACATTGCCTGTTGTGAACCTTTGCATTTTTCACTTATAGGCACTCATTGTTTCTTTCTTGTGTTGGTATTCAATAAAAATAAATACCATGTTCCTTAACTATAATTTTTGAGTATACAAGGGTGTCTAAAACAGTCAAAGCCTTGCTTTCGGCTTCCCTAGCTAGCCTCAGTGATGTTCTATCCTTTGGACACTGAGAATGAACGGTGCACCTTACAGGACAGTGTTTGA

mRNA sequence

ATGGAAGGAAAGCTGATTGTCCGGAAATCACTTTTTCCTATTTCATCATCACCCAACCTCAAGGACCCCTATGGCTGCCATTTGGTGACATATCCATTAGAAGTTTTGAGGTTACACATGGCAGTTGACCCTGGGTTTCGAGCAACATCCAAGATTGCCTCAAGTATGCTACGAGAGGAAGGCATTACATCTTTTACTACAGTGGTCTTGGACCGTCTCTTTTCTGCAGAGCTCCTTACATTGCCTGTTCTAGCCTCAGTGATGTTCTATCCTTTGGACACTGAGAATGAACGGTGCACCTTACAGGACAGTGTTTGA

Coding sequence (CDS)

ATGGAAGGAAAGCTGATTGTCCGGAAATCACTTTTTCCTATTTCATCATCACCCAACCTCAAGGACCCCTATGGCTGCCATTTGGTGACATATCCATTAGAAGTTTTGAGGTTACACATGGCAGTTGACCCTGGGTTTCGAGCAACATCCAAGATTGCCTCAAGTATGCTACGAGAGGAAGGCATTACATCTTTTACTACAGTGGTCTTGGACCGTCTCTTTTCTGCAGAGCTCCTTACATTGCCTGTTCTAGCCTCAGTGATGTTCTATCCTTTGGACACTGAGAATGAACGGTGCACCTTACAGGACAGTGTTTGA

Protein sequence

MEGKLIVRKSLFPISSSPNLKDPYGCHLVTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVLASVMFYPLDTENERCTLQDSV*

Homology

[Close]

BLAST of Csa1G051610 vs. Swiss-Prot
Match: TAAC_ARATH (Thylakoid ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana GN=TAAC PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-07
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1


Query: 28  LVTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSF 66
           L+TYPL+VLRL +AV+PG+R  S++A +MLREEG+ SF
Sbjct: 231 LITYPLDVLRLRLAVEPGYRTMSQVALNMLREEGVASF 268

[Close]

BLAST of Csa1G051610 vs. Swiss-Prot
Match: EAAC_ARATH (Probable envelope ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana GN=EAAC PE=2 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-07
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1


Query: 28  LVTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSF 66
           L+TYPL+VLRL +AV+PG+R  S++A SMLR+EGI SF
Sbjct: 203 LLTYPLDVLRLRLAVEPGYRTMSQVALSMLRDEGIASF 240

[Close]

BLAST of Csa1G051610 vs. TrEMBL
Match: A0A0A0LRL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051610 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.3e-51
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MEGKLIVRKSLFPISSSPNLKDPYGCHLVTYPLEVLRLHMAVDPGFRATSKIASSMLREE 60
           MEGKLIVRKSLFPISSSPNLKDPYGCHLVTYPLEVLRLHMAVDPGFRATSKIASSMLREE
Sbjct: 1   MEGKLIVRKSLFPISSSPNLKDPYGCHLVTYPLEVLRLHMAVDPGFRATSKIASSMLREE 60

Query: 61  GITSFTTVVLDRLFSAELLTLPVLASVMFYPLDTENERCTLQDSV 106
           GITSFTTVVLDRLFSAELLTLPVLASVMFYPLDTENERCTLQDSV
Sbjct: 61  GITSFTTVVLDRLFSAELLTLPVLASVMFYPLDTENERCTLQDSV 105

[Close]

BLAST of Csa1G051610 vs. TrEMBL
Match: E5GBF7_CUCME (ADPATP carrier protein OS=Cucumis melo subsp. melo PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-07
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 29  VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLF 75
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF
Sbjct: 209 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLF 254

[Close]

BLAST of Csa1G051610 vs. TrEMBL
Match: A0A0A0LDF0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G731730 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.0e-07
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 29  VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLF 75
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF
Sbjct: 209 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLF 254

[Close]

BLAST of Csa1G051610 vs. TAIR10
Match: AT5G01500.1 (AT5G01500.1 thylakoid ATP/ADP carrier)

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-08
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1


Query: 28  LVTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSF 66
           L+TYPL+VLRL +AV+PG+R  S++A +MLREEG+ SF
Sbjct: 231 LITYPLDVLRLRLAVEPGYRTMSQVALNMLREEGVASF 268

[Close]

BLAST of Csa1G051610 vs. TAIR10
Match: AT3G51870.1 (AT3G51870.1 Mitochondrial substrate carrier family protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-08
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1


Query: 28  LVTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSF 66
           L+TYPL+VLRL +AV+PG+R  S++A SMLR+EGI SF
Sbjct: 203 LLTYPLDVLRLRLAVEPGYRTMSQVALSMLRDEGIASF 240

[Close]

BLAST of Csa1G051610 vs. NCBI nr
Match: gi|700209327|gb|KGN64423.1| (hypothetical protein Csa_1G051610 [Cucumis sativus])

HSP 1 Score: 208.8 bits (530), Expect = 4.8e-51
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MEGKLIVRKSLFPISSSPNLKDPYGCHLVTYPLEVLRLHMAVDPGFRATSKIASSMLREE 60
           MEGKLIVRKSLFPISSSPNLKDPYGCHLVTYPLEVLRLHMAVDPGFRATSKIASSMLREE
Sbjct: 1   MEGKLIVRKSLFPISSSPNLKDPYGCHLVTYPLEVLRLHMAVDPGFRATSKIASSMLREE 60

Query: 61  GITSFTTVVLDRLFSAELLTLPVLASVMFYPLDTENERCTLQDSV 106
           GITSFTTVVLDRLFSAELLTLPVLASVMFYPLDTENERCTLQDSV
Sbjct: 61  GITSFTTVVLDRLFSAELLTLPVLASVMFYPLDTENERCTLQDSV 105

[Close]

BLAST of Csa1G051610 vs. NCBI nr
Match: gi|659083568|ref|XP_008442426.1| (PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic [Cucumis melo])

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-07
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 29  VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLF 75
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF
Sbjct: 209 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLF 254

[Close]

BLAST of Csa1G051610 vs. NCBI nr
Match: gi|449439900|ref|XP_004137723.1| (PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-07
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 29  VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLF 75
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF
Sbjct: 209 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLF 254

[Close]

BLAST of Csa1G051610 vs. NCBI nr
Match: gi|778683242|ref|XP_011651862.1| (PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 62.8 bits (151), Expect = 4.2e-07
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1


Query: 29  VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLF 75
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF
Sbjct: 188 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLF 233

[Close]

BLAST of Csa1G051610 vs. NCBI nr
Match: gi|743811855|ref|XP_011019124.1| (PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic [Populus euphratica])

HSP 1 Score: 58.5 bits (140), Expect = 8.0e-06
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 1


Query: 29  VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSF 66
           VTYPL+VLRL +AVDPGFR  S+IA +MLREEG+ SF
Sbjct: 210 VTYPLDVLRLRLAVDPGFRTMSEIALTMLREEGVASF 246

The following BLAST results are available for this feature:

BLAST of Csa1G051610 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TAAC_ARATH	1.9e-07	63.16	Thylakoid ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana GN=TAAC...	[more]
EAAC_ARATH	2.5e-07	65.79	Probable envelope ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of Csa1G051610 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRL6_CUCSA	3.3e-51	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051610 PE=4 SV=1	[more]
E5GBF7_CUCME	3.0e-07	69.57	ADPATP carrier protein OS=Cucumis melo subsp. melo PE=3 SV=1	[more]
A0A0A0LDF0_CUCSA	3.0e-07	69.57	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G731730 PE=3 SV=1	[more]

BLAST of Csa1G051610 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G01500.1	1.1e-08	63.16	thylakoid ATP/ADP carrier	[more]
AT3G51870.1	1.4e-08	65.79	Mitochondrial substrate carrier family protein	[more]

BLAST of Csa1G051610 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700209327\|gb\|KGN64423.1\|	4.8e-51	100.00	hypothetical protein Csa_1G051610 [Cucumis sativus]	[more]
gi\|659083568\|ref\|XP_008442426.1\|	4.2e-07	69.57	PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic [Cucumis mel...	[more]
gi\|449439900\|ref\|XP_004137723.1\|	4.2e-07	69.57	PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X1 [...	[more]
gi\|778683242\|ref\|XP_011651862.1\|	4.2e-07	69.57	PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X2 [...	[more]
gi\|743811855\|ref\|XP_011019124.1\|	8.0e-06	72.97	PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic [Populus eup...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR023395	Mt_carrier_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G051610.1	Csa1G051610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023395	Mitochondrial carrier domain	unknown	SSF103506	Mitochondrial carrier	coord: 27..98 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G051610	CSPI01G09680	Wild cucumber (PI 183967)	cpicuB000
Csa1G051610	CsGy1G009720	Cucumber (Gy14) v2	cgybcuB001

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G051610	Cucurbita pepo (Zucchini)	cpecuB029
Csa1G051610	Cucurbita pepo (Zucchini)	cpecuB359
Csa1G051610	Cucurbita pepo (Zucchini)	cpecuB515
Csa1G051610	Cucurbita pepo (Zucchini)	cpecuB648
Csa1G051610	Bottle gourd (USVL1VR-Ls)	culsiB067
Csa1G051610	Bottle gourd (USVL1VR-Ls)	culsiB022
Csa1G051610	Cucumber (Gy14) v2	cgybcuB012
Csa1G051610	Melon (DHL92) v3.6.1	cumedB022
Csa1G051610	Melon (DHL92) v3.6.1	cumedB043
Csa1G051610	Silver-seed gourd	carcuB0393
Csa1G051610	Silver-seed gourd	carcuB0523
Csa1G051610	Silver-seed gourd	carcuB1017
Csa1G051610	Watermelon (97103) v2	cuwmbB032
Csa1G051610	Watermelon (97103) v2	cuwmbB076
Csa1G051610	Wax gourd	cuwgoB032
Csa1G051610	Cucumber (Chinese Long) v2	cucuB002
Csa1G051610	Cucumber (Gy14) v1	cgycuB225
Csa1G051610	Cucurbita maxima (Rimu)	cmacuB071
Csa1G051610	Cucurbita maxima (Rimu)	cmacuB112
Csa1G051610	Cucurbita maxima (Rimu)	cmacuB204
Csa1G051610	Cucurbita maxima (Rimu)	cmacuB397
Csa1G051610	Cucurbita moschata (Rifu)	cmocuB061
Csa1G051610	Cucurbita moschata (Rifu)	cmocuB098
Csa1G051610	Cucurbita moschata (Rifu)	cmocuB189
Csa1G051610	Cucurbita moschata (Rifu)	cmocuB380
Csa1G051610	Melon (DHL92) v3.5.1	cumeB027
Csa1G051610	Melon (DHL92) v3.5.1	cumeB051
Csa1G051610	Watermelon (Charleston Gray)	cuwcgB035
Csa1G051610	Watermelon (Charleston Gray)	cuwcgB075
Csa1G051610	Watermelon (97103) v1	cuwmB008
Csa1G051610	Watermelon (97103) v1	cuwmB088