CsGy1G009720.1 (mRNA) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G009720.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Thylakoid ADP,ATP carrier protein, chloroplastic
Location	Chr1 : 6025138 .. 6025416 (+)
Sequence length	192

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGACATATCCATTAGAAGTTTTGAGGTTACACATGGCAGTTGACCCTGGGTTTCGAGCAACATCCAAGGTTTGTTTACTTTTGCCCTACCTATATCTGAAAATTGAAAAACCAATCATCAATTGTACTTTAGTATGGACAATTATTGGTTTCTAGATTGCCTCAAGTATGCTACGAGAGGAAGGCATTACATCTTTTACTACAGTGGTCTTGGACCGTCTCTTTTCTGCAGAGCTCCTTACATTGCCTGTTGTGAACCTTTGCATTTTTCACTTATAG

mRNA sequence

GTGACATATCCATTAGAAGTTTTGAGGTTACACATGGCAGTTGACCCTGGGTTTCGAGCAACATCCAAGATTGCCTCAAGTATGCTACGAGAGGAAGGCATTACATCTTTTACTACAGTGGTCTTGGACCGTCTCTTTTCTGCAGAGCTCCTTACATTGCCTGTTGTGAACCTTTGCATTTTTCACTTATAG

Coding sequence (CDS)

GTGACATATCCATTAGAAGTTTTGAGGTTACACATGGCAGTTGACCCTGGGTTTCGAGCAACATCCAAGATTGCCTCAAGTATGCTACGAGAGGAAGGCATTACATCTTTTACTACAGTGGTCTTGGACCGTCTCTTTTCTGCAGAGCTCCTTACATTGCCTGTTGTGAACCTTTGCATTTTTCACTTATAG

Protein sequence

VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCIFHL

Homology

[Close]

BLAST of CsGy1G009720.1 vs. NCBI nr
Match: KGN64423.1 (hypothetical protein Csa_1G051610 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 2.3e-20
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
          VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPV+   +
Sbjct: 29 VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVLASVM 88

Query: 61 FH 63
          F+
Sbjct: 89 FY 90

[Close]

BLAST of CsGy1G009720.1 vs. NCBI nr
Match: XP_008442426.1 (PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X1 [Cucumis melo] >ADN33798.1 ADPATP carrier protein [Cucumis melo subsp. melo])

HSP 1 Score: 65.5 bits (158), Expect = 7.5e-08
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF   +     VN CI
Sbjct: 209 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFG--IAPYIAVNFCI 268

Query: 61  FHL 64
           F L
Sbjct: 269 FDL 269

[Close]

BLAST of CsGy1G009720.1 vs. NCBI nr
Match: XP_004137723.1 (PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X1 [Cucumis sativus] >KGN58762.1 hypothetical protein Csa_3G731730 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 7.5e-08
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF   +     VN CI
Sbjct: 209 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFG--IAPYIAVNFCI 268

Query: 61  FHL 64
           F L
Sbjct: 269 FDL 269

[Close]

BLAST of CsGy1G009720.1 vs. NCBI nr
Match: XP_011651862.1 (PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 7.5e-08
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF   +     VN CI
Sbjct: 188 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFG--IAPYIAVNFCI 247

Query: 61  FHL 64
           F L
Sbjct: 248 FDL 248

[Close]

BLAST of CsGy1G009720.1 vs. NCBI nr
Match: XP_016899747.1 (PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 65.5 bits (158), Expect = 7.5e-08
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF   +     VN CI
Sbjct: 188 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFG--IAPYIAVNFCI 247

Query: 61  FHL 64
           F L
Sbjct: 248 FDL 248

[Close]

BLAST of CsGy1G009720.1 vs. TAIR10
Match: AT5G01500.1 (thylakoid ATP/ADP carrier)

HSP 1 Score: 56.2 bits (134), Expect = 8.3e-09
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           +TYPL+VLRL +AV+PG+R  S++A +MLREEG+ SF   +   L S  +     +N C+
Sbjct: 232 ITYPLDVLRLRLAVEPGYRTMSQVALNMLREEGVASFYNGLGPSLLS--IAPYIAINFCV 291

Query: 61  FHL 64
           F L
Sbjct: 292 FDL 292

[Close]

BLAST of CsGy1G009720.1 vs. TAIR10
Match: AT3G51870.1 (Mitochondrial substrate carrier family protein)

HSP 1 Score: 53.9 bits (128), Expect = 4.1e-08
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           +TYPL+VLRL +AV+PG+R  S++A SMLR+EGI SF   +   L    +     VN CI
Sbjct: 204 LTYPLDVLRLRLAVEPGYRTMSQVALSMLRDEGIASFYYGLGPSLVG--IAPYIAVNFCI 263

Query: 61  FHL 64
           F L
Sbjct: 264 FDL 264

[Close]

BLAST of CsGy1G009720.1 vs. Swiss-Prot
Match: sp|Q9M024|TAAC_ARATH (Thylakoid ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TAAC PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-07
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           +TYPL+VLRL +AV+PG+R  S++A +MLREEG+ SF   +   L S  +     +N C+
Sbjct: 232 ITYPLDVLRLRLAVEPGYRTMSQVALNMLREEGVASFYNGLGPSLLS--IAPYIAINFCV 291

Query: 61  FHL 64
           F L
Sbjct: 292 FDL 292

[Close]

BLAST of CsGy1G009720.1 vs. Swiss-Prot
Match: sp|O65023|EAAC_ARATH (Probable envelope ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EAAC PE=2 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 7.4e-07
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           +TYPL+VLRL +AV+PG+R  S++A SMLR+EGI SF   +   L    +     VN CI
Sbjct: 204 LTYPLDVLRLRLAVEPGYRTMSQVALSMLRDEGIASFYYGLGPSLVG--IAPYIAVNFCI 263

Query: 61  FHL 64
           F L
Sbjct: 264 FDL 264

[Close]

BLAST of CsGy1G009720.1 vs. TrEMBL
Match: tr|A0A0A0LRL6|A0A0A0LRL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051610 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-20
Identity = 56/62 (90.32%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
          VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPV+   +
Sbjct: 29 VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVLASVM 88

Query: 61 FH 63
          F+
Sbjct: 89 FY 90

[Close]

BLAST of CsGy1G009720.1 vs. TrEMBL
Match: tr|A0A1S4DUT0|A0A1S4DUT0_CUCME (probable envelope ADP,ATP carrier protein, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486300 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-08
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF   +     VN CI
Sbjct: 188 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFG--IAPYIAVNFCI 247

Query: 61  FHL 64
           F L
Sbjct: 248 FDL 248

[Close]

BLAST of CsGy1G009720.1 vs. TrEMBL
Match: tr|A0A1S3B567|A0A1S3B567_CUCME (probable envelope ADP,ATP carrier protein, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486300 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-08
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF   +     VN CI
Sbjct: 209 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFG--IAPYIAVNFCI 268

Query: 61  FHL 64
           F L
Sbjct: 269 FDL 269

[Close]

BLAST of CsGy1G009720.1 vs. TrEMBL
Match: tr|E5GBF7|E5GBF7_CUCME (ADPATP carrier protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-08
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF   +     VN CI
Sbjct: 209 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFG--IAPYIAVNFCI 268

Query: 61  FHL 64
           F L
Sbjct: 269 FDL 269

[Close]

BLAST of CsGy1G009720.1 vs. TrEMBL
Match: tr|A0A0A0LDF0|A0A0A0LDF0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731730 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 5.0e-08
Identity = 38/63 (60.32%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 1   VTYPLEVLRLHMAVDPGFRATSKIASSMLREEGITSFTTVVLDRLFSAELLTLPVVNLCI 60
           VTYPL+VLRL MAVDPGFR  S+IA SMLREEGITS+ + +   LF   +     VN CI
Sbjct: 209 VTYPLDVLRLRMAVDPGFRTASEIALSMLREEGITSYYSGLGPSLFG--IAPYIAVNFCI 268

Query: 61  FHL 64
           F L
Sbjct: 269 FDL 269

The following BLAST results are available for this feature:

BLAST of CsGy1G009720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64423.1	2.3e-20	90.32	hypothetical protein Csa_1G051610 [Cucumis sativus]	[more]
XP_008442426.1	7.5e-08	60.32	PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X1 [...	[more]
XP_004137723.1	7.5e-08	60.32	PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X1 [...	[more]
XP_011651862.1	7.5e-08	60.32	PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X2 [...	[more]
XP_016899747.1	7.5e-08	60.32	PREDICTED: probable envelope ADP,ATP carrier protein, chloroplastic isoform X2 [...	[more]

BLAST of CsGy1G009720.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G01500.1	8.3e-09	46.03	thylakoid ATP/ADP carrier	[more]
AT3G51870.1	4.1e-08	49.21	Mitochondrial substrate carrier family protein	[more]

BLAST of CsGy1G009720.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9M024\|TAAC_ARATH	1.5e-07	46.03	Thylakoid ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
sp\|O65023\|EAAC_ARATH	7.4e-07	49.21	Probable envelope ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana...	[more]

BLAST of CsGy1G009720.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRL6\|A0A0A0LRL6_CUCSA	1.5e-20	90.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051610 PE=4 SV=1	[more]
tr\|A0A1S4DUT0\|A0A1S4DUT0_CUCME	5.0e-08	60.32	probable envelope ADP,ATP carrier protein, chloroplastic isoform X2 OS=Cucumis m...	[more]
tr\|A0A1S3B567\|A0A1S3B567_CUCME	5.0e-08	60.32	probable envelope ADP,ATP carrier protein, chloroplastic isoform X1 OS=Cucumis m...	[more]
tr\|E5GBF7\|E5GBF7_CUCME	5.0e-08	60.32	ADPATP carrier protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
tr\|A0A0A0LDF0\|A0A0A0LDF0_CUCSA	5.0e-08	60.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G731730 PE=3 SV=1	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CsGy1G009720	CsGy1G009720	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G009720.1.exon.1	CsGy1G009720.1.exon.1	exon
CsGy1G009720.1.exon.2	CsGy1G009720.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CsGy1G009720.1.CDS.1	CsGy1G009720.1.CDS.1	CDS
CsGy1G009720.1.CDS.2	CsGy1G009720.1.CDS.2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CsGy1G009720.1	CsGy1G009720.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24089:SF619	SUBFAMILY NOT NAMED	coord: 1..63
None	No IPR available	PANTHER	PTHR24089	FAMILY NOT NAMED	coord: 1..63