CsGy1G009690 (gene) Cucumber (Gy14) v2

Overview
NameCsGy1G009690
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionMADS-box transcription factor 50
LocationChr1 : 5997349 .. 5997800 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGAGGGAAAGTTGAGCTGAAGCGAATTGAAAACCCGACAAGTCGGCAAGTGACATTCTCGAAGCGTCGGAATGGACTTTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCCCAAGTTGCCCTTCTCATCTTTTCCCCTTCCGGCAAAGCCTACCAATTTTCTAGCCATGAGTTCGTCTTCCCTACTATATATGTGTGTGTATGTGCTCTTTTGTTTTTCTTTTTTCTGGGTGTTAATATTTTGATATTGGTTGCAGCATGGATGGAACCCTAGCCAGGTATAGGACTGACGTCGGGCTACCACAATCCAACCATCCACATTCACGAGCTCTGGTATTTCATTTCTCCATTAATTATGTTTACAAGTTGATATCTCTGTTTTTACTTTAATTAATCTTGCTAATTATTTGATTTTTTTTTAATTTATAGAATTTTAATTAA

mRNA sequence

ATGGGAAGAGGGAAAGTTGAGCTGAAGCGAATTGAAAACCCGACAAGTCGGCAAGTGACATTCTCGAAGCGTCGGAATGGACTTTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCCCAAGTTGCCCTTCTCATCTTTTCCCCTTCCGGCAAAGCCTACCAATTTTCTAGCCATGACATGGATGGAACCCTAGCCAGGTATAGGACTGACGTCGGGCTACCACAATCCAACCATCCACATTCACGAGCTCTGAATTTTAATTAA

Coding sequence (CDS)

ATGGGAAGAGGGAAAGTTGAGCTGAAGCGAATTGAAAACCCGACAAGTCGGCAAGTGACATTCTCGAAGCGTCGGAATGGACTTTTGAAGAAAGCTTATGAACTCTCTGTTCTTTGTGATGCCCAAGTTGCCCTTCTCATCTTTTCCCCTTCCGGCAAAGCCTACCAATTTTCTAGCCATGACATGGATGGAACCCTAGCCAGGTATAGGACTGACGTCGGGCTACCACAATCCAACCATCCACATTCACGAGCTCTGAATTTTAATTAA

Protein sequence

MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMDGTLARYRTDVGLPQSNHPHSRALNFN
Homology
[Close]
BLAST of CsGy1G009690 vs. NCBI nr
Match: XP_011652201.1 (PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X1 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 1.2e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60
          MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH
Sbjct: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60

Query: 61 DMDGTLARYRTDVGLPQSNHPHSRAL 87
          DMDGTLARYRTDVGLPQSNHPHSRAL
Sbjct: 61 DMDGTLARYRTDVGLPQSNHPHSRAL 86

[Close]
BLAST of CsGy1G009690 vs. NCBI nr
Match: XP_004145150.1 (PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X2 [Cucumis sativus] >BAB21509.1 putative MADS-box protein [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 1.2e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60
          MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH
Sbjct: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60

Query: 61 DMDGTLARYRTDVGLPQSNHPHSRAL 87
          DMDGTLARYRTDVGLPQSNHPHSRAL
Sbjct: 61 DMDGTLARYRTDVGLPQSNHPHSRAL 86

[Close]
BLAST of CsGy1G009690 vs. NCBI nr
Match: XP_022923727.1 (truncated transcription factor CAULIFLOWER D-like [Cucurbita moschata])

HSP 1 Score: 171.0 bits (432), Expect = 1.8e-39
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60
          MGRGKV+LKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDA+VALLIFSPSGKAYQFSSH
Sbjct: 1  MGRGKVQLKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLIFSPSGKAYQFSSH 60

Query: 61 DMDGTLARYRTDVGLPQSNHPHSRAL 87
          DMDGTLARYR+DVGLPQSNHPHSRAL
Sbjct: 61 DMDGTLARYRSDVGLPQSNHPHSRAL 86

[Close]
BLAST of CsGy1G009690 vs. NCBI nr
Match: XP_023001170.1 (MADS-box transcription factor 6-like [Cucurbita maxima])

HSP 1 Score: 171.0 bits (432), Expect = 1.8e-39
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60
          MGRGKV+LKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDA+VALLIFSPSGKAYQFSSH
Sbjct: 1  MGRGKVQLKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLIFSPSGKAYQFSSH 60

Query: 61 DMDGTLARYRTDVGLPQSNHPHSRAL 87
          DMDGTLARYR+DVGLPQSNHPHSRAL
Sbjct: 61 DMDGTLARYRSDVGLPQSNHPHSRAL 86

[Close]
BLAST of CsGy1G009690 vs. NCBI nr
Match: XP_023519986.1 (truncated transcription factor CAULIFLOWER D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.0 bits (432), Expect = 1.8e-39
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60
          MGRGKV+LKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDA+VALLIFSPSGKAYQFSSH
Sbjct: 1  MGRGKVQLKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAEVALLIFSPSGKAYQFSSH 60

Query: 61 DMDGTLARYRTDVGLPQSNHPHSRAL 87
          DMDGTLARYR+DVGLPQSNHPHSRAL
Sbjct: 61 DMDGTLARYRSDVGLPQSNHPHSRAL 86

[Close]
BLAST of CsGy1G009690 vs. TAIR10
Match: AT5G62165.1 (AGAMOUS-like 42)

HSP 1 Score: 108.2 bits (269), Expect = 2.6e-24
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60
          M RGK+E+K+IEN TSRQVTFSKRRNGLLKKAYELSVLCDAQ++L+IFS  G+ Y+FSS 
Sbjct: 1  MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61 DMDGTLARYR 71
          DM  T+ RYR
Sbjct: 61 DMQKTIERYR 70

[Close]
BLAST of CsGy1G009690 vs. TAIR10
Match: AT1G24260.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 107.8 bits (268), Expect = 3.4e-24
Identity = 59/88 (67.05%), Postives = 68/88 (77.27%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQF-SS 60
          MGRG+VELKRIEN  +RQVTF+KRRNGLLKKAYELSVLCDA+VAL+IFS  GK Y+F SS
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 HDMDGTLARY-RTDVGLPQSNHPHSRAL 87
            M  TL RY + + G P+ N P   AL
Sbjct: 61 SSMLRTLERYQKCNYGAPEPNVPSREAL 88

[Close]
BLAST of CsGy1G009690 vs. TAIR10
Match: AT4G22950.1 (AGAMOUS-like 19)

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-23
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60
          M RGK E+KRIEN TSRQVTFSKRRNGLLKKA+ELSVLCDA+VAL+IFSP  K Y+FSS 
Sbjct: 1  MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61 DMDGTLARYRTDVGLPQSNH 81
           +  T+ RY+  +    +NH
Sbjct: 61 SIAATIERYQRRIKEIGNNH 80

[Close]
BLAST of CsGy1G009690 vs. TAIR10
Match: AT2G45660.1 (AGAMOUS-like 20)

HSP 1 Score: 105.1 bits (261), Expect = 2.2e-23
Identity = 50/69 (72.46%), Postives = 60/69 (86.96%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60
          M RGK ++KRIEN TSRQVTFSKRRNGLLKKA+ELSVLCDA+V+L+IFSP GK Y+F+S 
Sbjct: 1  MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61 DMDGTLARY 70
          +M  T+ RY
Sbjct: 61 NMQDTIDRY 69

[Close]
BLAST of CsGy1G009690 vs. TAIR10
Match: AT2G45650.1 (AGAMOUS-like 6)

HSP 1 Score: 104.8 bits (260), Expect = 2.9e-23
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60
          MGRG+VE+KRIEN  +RQVTFSKRRNGLLKKAYELSVLCDA+VAL+IFS  GK Y+F S 
Sbjct: 1  MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSV 60

Query: 61 DMDGTLARYRTDVGLPQSNH 81
           ++ T+ RY        SN+
Sbjct: 61 GIESTIERYNRCYNCSLSNN 80

[Close]
BLAST of CsGy1G009690 vs. Swiss-Prot
Match: sp|Q9XJ60|MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS50 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.1e-23
Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60
          M RGK ++KRIENPTSRQVTFSKRRNGLLKKA+ELSVLCDA+VAL++FSP GK Y+F+S 
Sbjct: 1  MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA 60

Query: 61 DMDGTLARYRT 72
              T+ RYRT
Sbjct: 61 STQKTIERYRT 71

[Close]
BLAST of CsGy1G009690 vs. Swiss-Prot
Match: sp|Q9FIS1|AGL42_ARATH (MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-23
Identity = 52/70 (74.29%), Postives = 61/70 (87.14%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60
          M RGK+E+K+IEN TSRQVTFSKRRNGLLKKAYELSVLCDAQ++L+IFS  G+ Y+FSS 
Sbjct: 1  MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

Query: 61 DMDGTLARYR 71
          DM  T+ RYR
Sbjct: 61 DMQKTIERYR 70

[Close]
BLAST of CsGy1G009690 vs. Swiss-Prot
Match: sp|O22456|SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana OX=3702 GN=SEP3 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.1e-23
Identity = 59/88 (67.05%), Postives = 68/88 (77.27%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQF-SS 60
          MGRG+VELKRIEN  +RQVTF+KRRNGLLKKAYELSVLCDA+VAL+IFS  GK Y+F SS
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 HDMDGTLARY-RTDVGLPQSNHPHSRAL 87
            M  TL RY + + G P+ N P   AL
Sbjct: 61 SSMLRTLERYQKCNYGAPEPNVPSREAL 88

[Close]
BLAST of CsGy1G009690 vs. Swiss-Prot
Match: sp|O04067|AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba OX=3728 GN=AGL9 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.0e-23
Identity = 59/88 (67.05%), Postives = 68/88 (77.27%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQF-SS 60
          MGRG+VELKRIEN  +RQVTF+KRRNGLLKKAYELSVLCDA+VAL+IFS  GK Y+F SS
Sbjct: 1  MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61 HDMDGTLARY-RTDVGLPQSNHPHSRAL 87
            M  TL RY + + G P+ N P   AL
Sbjct: 61 SSMIRTLERYQKCNYGPPEPNVPSREAL 88

[Close]
BLAST of CsGy1G009690 vs. Swiss-Prot
Match: sp|O82743|AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=1 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-22
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60
          M RGK E+KRIEN TSRQVTFSKRRNGLLKKA+ELSVLCDA+VAL+IFSP  K Y+FSS 
Sbjct: 1  MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61 DMDGTLARYRTDVGLPQSNH 81
           +  T+ RY+  +    +NH
Sbjct: 61 SIAATIERYQRRIKEIGNNH 80

[Close]
BLAST of CsGy1G009690 vs. TrEMBL
Match: tr|Q9AYR8|Q9AYR8_CUCSA (Putative MADS-box protein OS=Cucumis sativus OX=3659 GN=ERAF17 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 8.3e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60
          MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH
Sbjct: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60

Query: 61 DMDGTLARYRTDVGLPQSNHPHSRAL 87
          DMDGTLARYRTDVGLPQSNHPHSRAL
Sbjct: 61 DMDGTLARYRTDVGLPQSNHPHSRAL 86

[Close]
BLAST of CsGy1G009690 vs. TrEMBL
Match: tr|Q9M3U2|Q9M3U2_CUCSA (Putative transcription factor (Fragment) OS=Cucumis sativus OX=3659 GN=cus3 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.9e-39
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0 

Query: 4  GKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMD 63
          GKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMD
Sbjct: 1  GKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMD 60

Query: 64 GTLARYRTDVGLPQSNHPHSRAL 87
          GTLARYRTDVGLPQSNHPHSRAL
Sbjct: 61 GTLARYRTDVGLPQSNHPHSRAL 83

[Close]
BLAST of CsGy1G009690 vs. TrEMBL
Match: tr|A0A2P4HQ32|A0A2P4HQ32_QUESU (Mads-box transcription factor 17 OS=Quercus suber OX=58331 GN=CFP56_08906 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 6.3e-33
Identity = 71/88 (80.68%), Postives = 81/88 (92.05%), Query Frame = 0 

Query: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60
           MGRGKVELKRIENPTSRQVTFSKRRNGLLKKA+ELS+LCDA+VAL+IFSPSGK YQF+SH
Sbjct: 166 MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAFELSILCDAEVALVIFSPSGKGYQFASH 225

Query: 61  DMDGTLARYRTDVGLPQSNHPHSRALNF 89
           DM+ T+ARYR++VGLPQS   HSR + F
Sbjct: 226 DMNRTIARYRSEVGLPQSIDQHSRPMEF 253

[Close]
BLAST of CsGy1G009690 vs. TrEMBL
Match: tr|A0A067JIE7|A0A067JIE7_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26434 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.2e-31
Identity = 69/88 (78.41%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60
          MGRGKVELKRIENPT+RQVTFSKRRNGLLKKA+ELS+LCDA+V LL+FSPSGKAYQF+SH
Sbjct: 1  MGRGKVELKRIENPTNRQVTFSKRRNGLLKKAFELSILCDAEVCLLVFSPSGKAYQFASH 60

Query: 61 DMDGTLARYRTDVGLPQSNHPHSRALNF 89
          DMD T+ARYR++VGL  SN   SR+L +
Sbjct: 61 DMDRTIARYRSEVGLLGSNDQRSRSLEY 88

[Close]
BLAST of CsGy1G009690 vs. TrEMBL
Match: tr|A0A061FZK9|A0A061FZK9_THECC (K-box region and MADS-box transcription factor family protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_014661 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.5e-31
Identity = 66/88 (75.00%), Postives = 80/88 (90.91%), Query Frame = 0 

Query: 1  MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60
          MGRGKVE+KRIENPTSRQVTFSKRRNGLLKKA+ELS+LCDA+VALLIFS +GKAYQF+SH
Sbjct: 1  MGRGKVEMKRIENPTSRQVTFSKRRNGLLKKAFELSILCDAEVALLIFSSTGKAYQFASH 60

Query: 61 DMDGTLARYRTDVGLPQSNHPHSRALNF 89
          DMD ++ +YR++VGLP S++P  R + F
Sbjct: 61 DMDRSIGKYRSEVGLPDSSNPQFRTMEF 88

The following BLAST results are available for this feature:
BLAST of CsGy1G009690 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652201.11.2e-40100.00PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X1 [Cucumis... [more]
XP_004145150.11.2e-40100.00PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X2 [Cucumis... [more]
XP_022923727.11.8e-3996.51truncated transcription factor CAULIFLOWER D-like [Cucurbita moschata][more]
XP_023001170.11.8e-3996.51MADS-box transcription factor 6-like [Cucurbita maxima][more]
XP_023519986.11.8e-3996.51truncated transcription factor CAULIFLOWER D-like [Cucurbita pepo subsp. pepo][more]
BLAST of CsGy1G009690 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G62165.12.6e-2474.29AGAMOUS-like 42[more]
AT1G24260.23.4e-2467.05K-box region and MADS-box transcription factor family protein [more]
AT4G22950.11.3e-2366.25AGAMOUS-like 19[more]
AT2G45660.12.2e-2372.46AGAMOUS-like 20[more]
AT2G45650.12.9e-2365.00AGAMOUS-like 6[more]
BLAST of CsGy1G009690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9XJ60|MAD50_ORYSJ2.1e-2373.24MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
sp|Q9FIS1|AGL42_ARATH4.7e-2374.29MADS-box protein AGL42 OS=Arabidopsis thaliana OX=3702 GN=AGL42 PE=1 SV=1[more]
sp|O22456|SEP3_ARATH6.1e-2367.05Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana OX=3702 GN=SEP3 PE=1 S... [more]
sp|O04067|AGL9_SINAL8.0e-2367.05Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba OX=3728 GN=AGL9 PE=2 ... [more]
sp|O82743|AGL19_ARATH2.3e-2266.25Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana OX=3702 GN=AGL19 PE=... [more]
BLAST of CsGy1G009690 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|Q9AYR8|Q9AYR8_CUCSA8.3e-41100.00Putative MADS-box protein OS=Cucumis sativus OX=3659 GN=ERAF17 PE=2 SV=1[more]
tr|Q9M3U2|Q9M3U2_CUCSA5.9e-39100.00Putative transcription factor (Fragment) OS=Cucumis sativus OX=3659 GN=cus3 PE=2... [more]
tr|A0A2P4HQ32|A0A2P4HQ32_QUESU6.3e-3380.68Mads-box transcription factor 17 OS=Quercus suber OX=58331 GN=CFP56_08906 PE=4 S... [more]
tr|A0A067JIE7|A0A067JIE7_JATCU1.2e-3178.41Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_26434 PE=4 SV=1[more]
tr|A0A061FZK9|A0A061FZK9_THECC4.5e-3175.00K-box region and MADS-box transcription factor family protein isoform 2 OS=Theob... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000977RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003677DNA binding
GO:0046983protein dimerization activity
Vocabulary: Biological Process
TermDefinition
GO:0045944positive regulation of transcription from RNA polymerase II promoter
Vocabulary: INTERPRO
TermDefinition
IPR033896MADS_MEF2-like
IPR036879TF_MADSbox_sf
IPR002100TF_MADSbox
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy1G009690.1CsGy1G009690.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 23..38
score: 86.34
coord: 38..59
score: 54.23
coord: 3..23
score: 68.83
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 1.4E-41
score: 154.1
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 7.9E-28
score: 95.6
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 32.394
IPR036879Transcription factor, MADS-box superfamilyGENE3DG3DSA:3.40.1810.10coord: 13..78
e-value: 3.3E-30
score: 105.5
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILYSSF55455SRF-likecoord: 2..84
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 1..76
IPR033896MADS MEF2-likeCDDcd00265MADS_MEF2_likecoord: 2..72
e-value: 1.06315E-43
score: 137.298

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy1G009690Cla002628Watermelon (97103) v1cgybwmB010
CsGy1G009690CSPI01G09650Wild cucumber (PI 183967)cgybcpiB001
CsGy1G009690CmaCh13G008130Cucurbita maxima (Rimu)cgybcmaB063
CsGy1G009690CmaCh18G003120Cucurbita maxima (Rimu)cgybcmaB093
CsGy1G009690CmoCh18G002240Cucurbita moschata (Rifu)cgybcmoB082
CsGy1G009690CmoCh13G008430Cucurbita moschata (Rifu)cgybcmoB058
CsGy1G009690Lsi02G005120Bottle gourd (USVL1VR-Ls)cgyblsiB018
CsGy1G009690Cp4.1LG20g03120Cucurbita pepo (Zucchini)cgybcpeB080
CsGy1G009690MELO3C002369.2Melon (DHL92) v3.6.1cgybmedB020
CsGy1G009690CsaV3_1G009750Cucumber (Chinese Long) v3cgybcucB002
CsGy1G009690Cla97C03G054980Watermelon (97103) v2cgybwmbB032
CsGy1G009690Bhi08G001236Wax gourdcgybwgoB029
CsGy1G009690Carg07608Silver-seed gourdcarcgybB0989
CsGy1G009690Carg06802Silver-seed gourdcarcgybB0500
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy1G009690Cucumber (Gy14) v2cgybcgybB005
CsGy1G009690Cucurbita maxima (Rimu)cgybcmaB025
CsGy1G009690Cucurbita maxima (Rimu)cgybcmaB049
CsGy1G009690Cucurbita moschata (Rifu)cgybcmoB026
CsGy1G009690Cucurbita moschata (Rifu)cgybcmoB046
CsGy1G009690Cucurbita pepo (Zucchini)cgybcpeB018
CsGy1G009690Cucurbita pepo (Zucchini)cgybcpeB049
CsGy1G009690Cucurbita pepo (Zucchini)cgybcpeB123
CsGy1G009690Cucumber (Chinese Long) v2cgybcuB001
CsGy1G009690Cucumber (Chinese Long) v2cgybcuB014
CsGy1G009690Bottle gourd (USVL1VR-Ls)cgyblsiB064
CsGy1G009690Melon (DHL92) v3.5.1cgybmeB022
CsGy1G009690Melon (DHL92) v3.5.1cgybmeB046
CsGy1G009690Melon (DHL92) v3.6.1cgybmedB041
CsGy1G009690Watermelon (Charleston Gray)cgybwcgB033
CsGy1G009690Watermelon (Charleston Gray)cgybwcgB069
CsGy1G009690Watermelon (97103) v1cgybwmB087
CsGy1G009690Wild cucumber (PI 183967)cgybcpiB013
CsGy1G009690Silver-seed gourdcarcgybB0373
CsGy1G009690Cucumber (Chinese Long) v3cgybcucB010
CsGy1G009690Watermelon (97103) v2cgybwmbB070