CmaCh18G003120 (gene) Cucurbita maxima (Rimu)

NameCmaCh18G003120
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionMADS-box family transcription factor
LocationCma_Chr18 : 1663573 .. 1665438 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGAGGCAAAGTTGAGGTGAAGAGAATTGAAAATCCGACAAGTCGGCAAGTGAGCTTCTCGAAACGTCGGAATGGCGTTTTGAAGAAAGCTTATGAGCTGGCGGTTCTCTGCGACGCCGAGGTCGCCGTCGTCATCTTTTCCCCCTCCGGCAAGGCCTACCAGTTCTCCAGCCATGAGTTCCTACTTCTTTTTCTCTTTATTTATTTATTTATTTATTTATTTATATATTTATATTTCCGAGCTTCTTAATAATTATTAGATACAAAATTGAAATATATTTACGCTCGGTGTGTGTTTGGTTTAATTTTGCGACAGCATAGATGGAACCCTAGCTAGGTACAGAAAGTACGTTGGGCAATCACAATTCAACCATCCGCTTTCACGAGCTCTGGTATTTAGTTAGTTAATTGATTCTATATTTTGATTTCGACTAAGGTTGTTCGAAAAATTCGATGATTGAACAACCCTATGGATTTCATTCAAATAAATGAAAGTAGATACTCCTGGAATTCCCGACGATGTCTAGGTTTGCATTAGAAATGGTCGATATGGAGAACAAAAGAATCCCCCGTTTCATCATGGGTCTTCTCGAAGACATCAAGGGTTAGTAATGACCCACTTCATAACCGCTTCAATTTTGATGAGATCTAACTGATATACCTTTTTTTTTGTCCCTTGGATGTTTTCGTGAAGACCGATGATGAAACAAAGGGTTATTTTCTTCTTTATGTCGACCATTCGATTGCGAATTTGGAAAGCATGGTGAACTCCAGGTCGTATCGTACTACTCTATCATCTTATATTGTTGTTTAATGCTCTAGGAATGTCTCTTGGTTTTTTATACATATATAAATAAATAAATAGATAGTTTACCTATTAACATTTTACTTTATTTGTGAACTAACTCAATTCAAATATTTTATTATTGGGTTAGGTTTGATAGTAAAAATTACTATAGTTTGGAAAAAATAACAATCCGAATAAATGGATTGAATCTAATGCCCTAATCCAACTCGACCCAACTCATAAACGCCCTATATAGTTTGAAAAATATTGAGTTTAAGAGCTTAAAGTCTTAGAAATTCAACCCGACCCAACTCATAAACGCCCGGTATAGTTTGAAAAATGTTGAGTTTAAGAGCTTAAAGCCTTAGAAACCTAACCCGACCCGAATCATAAAAGTTCATTATTAATATTGAATGGTAGGTTTGGAAGAGCGAGATGGAGGACATGAACAGATCAATAAGCAGCTTAGAGGCAAGATTAAGGTACATTTAAATTTGAACTATAATATTTAACTATTTAACTTTATTAAAATAATAATAATAATAAGTTACAGACATTTTTCTGGTGAGGATCTCGAGCCGTTGACAATTAAGGAGTTAAAACGGTTAGAAAGACAATTAAGCGTCGGAATCGAACGTGTCCGCTCTAAAATGGTAAATCGTAGCTAATAAATCCTTAAATTAAATAGTTTAAAAATTTATTAAACACTTTTTAAATTTTATTTTCGACAGAGACGAATCATATCAGAACATACAAGTCAGCTTAAGAAGAAGGTAAAATCATCGATTTTTACTGTGAGATTCTTATCGGTTATAGTTAAAATTTAACTGTTGGGTTAAATTAAAATTTACTGCAGTATAAGGGTCTGCAAGAGGAGCATAGCCGTCTGCAGAAGAGAGTAAAAAAATTTCCAAAATTTACCTCTAGAATTAATTTTACCATACTTTTATTTATTATTAATTATTTATTTAATATTTTATGTATTTTCAGCTGAACCAGCTTAAGGATGTGGCTGAGACGACCACAAGAATCTCAGATGCTGATGGTGTCTCTGTACTCGAAATGTTTGTATAA

mRNA sequence

ATGGGAAGAGGCAAAGTTGAGGTGAAGAGAATTGAAAATCCGACAAGTCGGCAAGTGAGCTTCTCGAAACGTCGGAATGGCGTTTTGAAGAAAGCTTATGAGCTGGCGGTTCTCTGCGACGCCGAGGTCGCCGTCGTCATCTTTTCCCCCTCCGGCAAGGCCTACCAGTTCTCCAGCCATGACATAGATGGAACCCTAGCTAGGTACAGAAAGTACGTTGGGCAATCACAATTCAACCATCCGCTTTCACGAGCTCTGGTTTGGAAGAGCGAGATGGAGGACATGAACAGATCAATAAGCAGCTTAGAGGCAAGATTAAGACATTTTTCTGGTGAGGATCTCGAGCCGTTGACAATTAAGGAGTTAAAACGGTTAGAAAGACAATTAAGCGTCGGAATCGAACGTGTCCGCTCTAAAATGAGACGAATCATATCAGAACATACAAGTCAGCTTAAGAAGAAGTATAAGGGTCTGCAAGAGGAGCATAGCCGTCTGCAGAAGAGACTGAACCAGCTTAAGGATGTGGCTGAGACGACCACAAGAATCTCAGATGCTGATGGTGTCTCTGTACTCGAAATGTTTGTATAA

Coding sequence (CDS)

ATGGGAAGAGGCAAAGTTGAGGTGAAGAGAATTGAAAATCCGACAAGTCGGCAAGTGAGCTTCTCGAAACGTCGGAATGGCGTTTTGAAGAAAGCTTATGAGCTGGCGGTTCTCTGCGACGCCGAGGTCGCCGTCGTCATCTTTTCCCCCTCCGGCAAGGCCTACCAGTTCTCCAGCCATGACATAGATGGAACCCTAGCTAGGTACAGAAAGTACGTTGGGCAATCACAATTCAACCATCCGCTTTCACGAGCTCTGGTTTGGAAGAGCGAGATGGAGGACATGAACAGATCAATAAGCAGCTTAGAGGCAAGATTAAGACATTTTTCTGGTGAGGATCTCGAGCCGTTGACAATTAAGGAGTTAAAACGGTTAGAAAGACAATTAAGCGTCGGAATCGAACGTGTCCGCTCTAAAATGAGACGAATCATATCAGAACATACAAGTCAGCTTAAGAAGAAGTATAAGGGTCTGCAAGAGGAGCATAGCCGTCTGCAGAAGAGACTGAACCAGCTTAAGGATGTGGCTGAGACGACCACAAGAATCTCAGATGCTGATGGTGTCTCTGTACTCGAAATGTTTGTATAA

Protein sequence

MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSHDIDGTLARYRKYVGQSQFNHPLSRALVWKSEMEDMNRSISSLEARLRHFSGEDLEPLTIKELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQLKDVAETTTRISDADGVSVLEMFV
BLAST of CmaCh18G003120 vs. Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.5e-34
Identity = 80/170 (47.06%), Postives = 114/170 (67.06%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSH 60
           MGRG+VE+KRIEN  +RQV+FSKRRNG+LKKAYEL+VLCDAEVA++IFS  GK Y+F S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  DIDGTLARYRKYVGQSQ-FNHPLSRALVWKSEMEDMNRSISSLEARLRHFSGEDLEPLTI 120
            I  TL RY+     +Q  N+ LS    W  EM  +     +L+   RH  GEDL PL++
Sbjct: 61  GITKTLERYQHCCYNAQDSNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSV 120

Query: 121 KELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRL 170
           KEL++LE+QL   + + R +  +++ E   +L++K + L E + +L+ +L
Sbjct: 121 KELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKL 170

BLAST of CmaCh18G003120 vs. Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 143.7 bits (361), Expect = 2.2e-33
Identity = 81/188 (43.09%), Postives = 117/188 (62.23%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSH 60
           MGRG+VE+KRIEN  +RQV+FSKRRNG+LKKAYEL+VLCDAEVA++IFS  GK Y+F S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  DIDGTLARYRKYVGQSQFNHPL---SRALVWKSEMEDMNRSISSLEARLRHFSGEDLEPL 120
            I+ TL +Y      +Q ++          W  EM  +   +  L+   RH  GEDL PL
Sbjct: 61  GINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPL 120

Query: 121 TIKELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQLKDVAE 180
           +IKEL++LE+QL   + + R +  +I+ E    L++K + L E + +L+ +L    D + 
Sbjct: 121 SIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSN 180

Query: 181 TTTRISDA 186
             + I D+
Sbjct: 181 CRSAIQDS 188

BLAST of CmaCh18G003120 vs. Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 142.5 bits (358), Expect = 4.8e-33
Identity = 76/183 (41.53%), Postives = 122/183 (66.67%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSH 60
           MGRG+VE+KRIEN  +RQV+FSKRR G+LKKA E++VLCDAEV++++FS  GK +++SS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSE 60

Query: 61  D-IDGTLARYRKY-VGQSQFNHPLSRALV---WKSEMEDMNRSISSLEARLRHFSGEDLE 120
             ++  L RY +Y   + Q   P S       W  E   +   I  LE   RH+ GE+LE
Sbjct: 61  SCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELE 120

Query: 121 PLTIKELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQLKDV 179
           P+++K+L+ LE+QL   ++ +RS+  ++++E  + L++K K +QEE+S L K++ + +++
Sbjct: 121 PMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERENI 180

BLAST of CmaCh18G003120 vs. Swiss-Prot
Match: CAL_BRARR (Transcription factor CAULIFLOWER OS=Brassica rapa subsp. rapa GN=CAL PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-32
Identity = 76/183 (41.53%), Postives = 119/183 (65.03%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSH 60
           MGRG+VE+KRIEN  +RQV+FSKRR G+LKKA+E+++LCDAEV++++FS  GK +++SS 
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRAGLLKKAHEISILCDAEVSLIVFSHKGKLFEYSSE 60

Query: 61  D-IDGTLARYRKY-VGQSQFNHPLSRALV---WKSEMEDMNRSISSLEARLRHFSGEDLE 120
             ++  L RY +Y   + Q   P S       W  E   +   I  LE   RH+ GEDLE
Sbjct: 61  SCMEKVLERYERYSYAEKQLKAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEDLE 120

Query: 121 PLTIKELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQLKDV 179
            ++IKEL+ LE+QL   ++ +RS+  +++ E  + L++K K + EE+S L K++ + + +
Sbjct: 121 SISIKELQNLEQQLDTSLKHIRSRKNQLMHESLNHLQRKEKEILEENSMLTKQIKERESI 180

BLAST of CmaCh18G003120 vs. Swiss-Prot
Match: CAL_BRARP (Transcription factor CAULIFLOWER OS=Brassica rapa subsp. pekinensis GN=CAL PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.8e-32
Identity = 76/183 (41.53%), Postives = 119/183 (65.03%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSH 60
           MGRG+VE+KRIEN  +RQV+FSKRR G+LKKA+E+++LCDAEV++++FS  GK +++SS 
Sbjct: 1   MGRGRVEMKRIENKINRQVTFSKRRAGLLKKAHEISILCDAEVSLIVFSHKGKLFEYSSE 60

Query: 61  D-IDGTLARYRKY-VGQSQFNHPLSRALV---WKSEMEDMNRSISSLEARLRHFSGEDLE 120
             ++  L RY +Y   + Q   P S       W  E   +   I  LE   RH+ GEDLE
Sbjct: 61  SCMEKVLERYERYSYAEKQLKAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEDLE 120

Query: 121 PLTIKELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQLKDV 179
            ++IKEL+ LE+QL   ++ +RS+  +++ E  + L++K K + EE+S L K++ + + +
Sbjct: 121 SISIKELQNLEQQLDTSLKHIRSRKNQLMHESLNHLQRKEKEILEENSMLTKQIKERESI 180

BLAST of CmaCh18G003120 vs. TrEMBL
Match: Q9AYR8_CUCSA (Putative MADS-box protein OS=Cucumis sativus GN=ERAF17 PE=2 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 7.2e-76
Identity = 152/194 (78.35%), Postives = 174/194 (89.69%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSH 60
           MGRGKVE+KRIENPTSRQV+FSKRRNG+LKKAYEL+VLCDA+VA++IFSPSGKAYQFSSH
Sbjct: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60

Query: 61  DIDGTLARYRKYVGQSQFNHPLSRALVWKSEMEDMNRSISSLEARLRHFSGEDLEPLTIK 120
           D+DGTLARYR  VG  Q NHP SRAL WK+EM+DM RSISS+EARLRHF GEDLEPL +K
Sbjct: 61  DMDGTLARYRTDVGLPQSNHPHSRALFWKTEMDDMKRSISSMEARLRHFVGEDLEPLNVK 120

Query: 121 ELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQLKDVAET-T 180
           ELK+LERQ+SVGIER+RSK RRII+EH + LK+KYKGLQEEHSRLQKRLNQLKDV  T +
Sbjct: 121 ELKQLERQMSVGIERIRSKKRRIIAEHINLLKRKYKGLQEEHSRLQKRLNQLKDVVVTNS 180

Query: 181 TRISDADGVSVLEM 194
           +R SDA+  S LE+
Sbjct: 181 SRNSDANPASALEI 194

BLAST of CmaCh18G003120 vs. TrEMBL
Match: Q9M3U2_CUCSA (Putative transcription factor (Fragment) OS=Cucumis sativus GN=cus3 PE=2 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.9e-74
Identity = 149/191 (78.01%), Postives = 171/191 (89.53%), Query Frame = 1

Query: 4   GKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSHDID 63
           GKVE+KRIENPTSRQV+FSKRRNG+LKKAYEL+VLCDA+VA++IFSPSGKAYQFSSHD+D
Sbjct: 1   GKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMD 60

Query: 64  GTLARYRKYVGQSQFNHPLSRALVWKSEMEDMNRSISSLEARLRHFSGEDLEPLTIKELK 123
           GTLARYR  VG  Q NHP SRAL WK+EM+DM RSISS+EARLRHF GEDLEPL +KELK
Sbjct: 61  GTLARYRTDVGLPQSNHPHSRALFWKTEMDDMKRSISSMEARLRHFVGEDLEPLNVKELK 120

Query: 124 RLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQLKDVAET-TTRI 183
           +LERQ+SVGIER+RSK RRII+EH + LK+KYKGLQEEHSRLQKRLNQLKDV  T ++R 
Sbjct: 121 QLERQMSVGIERIRSKKRRIIAEHINLLKRKYKGLQEEHSRLQKRLNQLKDVVVTNSSRN 180

Query: 184 SDADGVSVLEM 194
           SDA+  S LE+
Sbjct: 181 SDANPASALEI 191

BLAST of CmaCh18G003120 vs. TrEMBL
Match: Q0JRW1_9LAMI (Deficiens H7 homologue OS=Misopates orontium GN=defh7 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 7.0e-55
Identity = 113/195 (57.95%), Postives = 158/195 (81.03%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSH 60
           MGRGKVE+KRIENPT+RQV+FSKRRNG+LKKA+EL+VLCDAEVAV+IFSPSGKAYQ++SH
Sbjct: 1   MGRGKVELKRIENPTNRQVTFSKRRNGLLKKAFELSVLCDAEVAVLIFSPSGKAYQYASH 60

Query: 61  DIDGTLARYRKYVGQSQ-FNHPLSRALVWKSEMEDMNRSISSLEARLRHFSGEDLEPLTI 120
           D   T+ARY+  VG ++  +  ++   VW++E++D+ R++ +LEAR  HFSGE+L  L +
Sbjct: 61  DTHRTIARYKSEVGLAKPGDQGITSMEVWRNEIDDLKRTVDALEARDMHFSGENLSGLGM 120

Query: 121 KELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQLKDVAETT 180
           K+LK+LERQ+ +G+ER+RSK RRII+EH + LKK++K LQEE++ LQKRL++++    + 
Sbjct: 121 KDLKQLERQIRIGVERIRSKKRRIITEHITYLKKRHKDLQEENNNLQKRLHEIQAANTSC 180

Query: 181 TRISDADGVSVLEMF 195
           + ISD+DG  V   F
Sbjct: 181 SIISDSDGTRVFPGF 195

BLAST of CmaCh18G003120 vs. TrEMBL
Match: A0A0D2QLE2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G043400 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.3e-53
Identity = 108/175 (61.71%), Postives = 149/175 (85.14%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSH 60
           MGRGKVE+KRIENPT+RQV+FSKRRNG+LKKA+EL++LCDAEVA++IFS SGK YQF+SH
Sbjct: 10  MGRGKVELKRIENPTNRQVTFSKRRNGLLKKAFELSILCDAEVALLIFSSSGKVYQFASH 69

Query: 61  DIDGTLARYRKYVGQSQFNHPLSRAL-VWKSEMEDMNRSISSLEARLRHFSGEDLEPLTI 120
           D+D T+A+YR+ VG    ++P  R    W+SE++++ RSI++LEARL+H SGED+  L +
Sbjct: 70  DMDRTVAKYRREVGLPDSSNPQFRTREFWRSEIDELKRSINTLEARLKHLSGEDILALGM 129

Query: 121 KELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQLKD 175
           ++LK+LERQL +G+ERVRS+ RRI+S+H + LK+++K LQEE+SRL KRL +L+D
Sbjct: 130 RDLKQLERQLKIGVERVRSRKRRIVSDHATLLKRRHKQLQEENSRLHKRLKELQD 184

BLAST of CmaCh18G003120 vs. TrEMBL
Match: A0A067JIE7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26434 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.3e-53
Identity = 109/175 (62.29%), Postives = 145/175 (82.86%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSH 60
           MGRGKVE+KRIENPT+RQV+FSKRRNG+LKKA+EL++LCDAEV +++FSPSGKAYQF+SH
Sbjct: 1   MGRGKVELKRIENPTNRQVTFSKRRNGLLKKAFELSILCDAEVCLLVFSPSGKAYQFASH 60

Query: 61  DIDGTLARYRKYVGQSQFNHPLSRAL-VWKSEMEDMNRSISSLEARLRHFSGEDLEPLTI 120
           D+D T+ARYR  VG    N   SR+L  W++E+E++ R++ + E ++RHF GED+  L +
Sbjct: 61  DMDRTIARYRSEVGLLGSNDQRSRSLEYWRNEIEELKRTMDATETKIRHFCGEDISKLGM 120

Query: 121 KELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQLKD 175
           +ELK+LERQL   IER+RSKM RIISEH S  K+K+K LQEE++RLQKR+++L D
Sbjct: 121 RELKQLERQLRTAIERIRSKMSRIISEHMSLEKRKHKALQEENARLQKRIHELND 175

BLAST of CmaCh18G003120 vs. TAIR10
Match: AT1G26310.1 (AT1G26310.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 142.5 bits (358), Expect = 2.7e-34
Identity = 76/183 (41.53%), Postives = 122/183 (66.67%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSH 60
           MGRG+VE+KRIEN  +RQV+FSKRR G+LKKA E++VLCDAEV++++FS  GK +++SS 
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSE 60

Query: 61  D-IDGTLARYRKY-VGQSQFNHPLSRALV---WKSEMEDMNRSISSLEARLRHFSGEDLE 120
             ++  L RY +Y   + Q   P S       W  E   +   I  LE   RH+ GE+LE
Sbjct: 61  SCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELE 120

Query: 121 PLTIKELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQLKDV 179
           P+++K+L+ LE+QL   ++ +RS+  ++++E  + L++K K +QEE+S L K++ + +++
Sbjct: 121 PMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERENI 180

BLAST of CmaCh18G003120 vs. TAIR10
Match: AT2G45660.1 (AT2G45660.1 AGAMOUS-like 20)

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-32
Identity = 74/170 (43.53%), Postives = 113/170 (66.47%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSH 60
           M RGK ++KRIEN TSRQV+FSKRRNG+LKKA+EL+VLCDAEV+++IFSP GK Y+F+S 
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61  DIDGTLARYRKYVGQSQFNHPLSRALV--WKSEMEDMNRSISSLEARLRHFSGEDLEPLT 120
           ++  T+ RY ++        P+S   +   K E  +M + I  LEA  R   GE +   +
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCS 120

Query: 121 IKELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKR 169
           I+EL+++E+QL   ++ +R++  ++  E   QLK+K K L  E+ +L ++
Sbjct: 121 IEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEK 170

BLAST of CmaCh18G003120 vs. TAIR10
Match: AT3G57230.1 (AT3G57230.1 AGAMOUS-like 16)

HSP 1 Score: 136.3 bits (342), Expect = 2.0e-32
Identity = 77/192 (40.10%), Postives = 117/192 (60.94%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSH 60
           MGRGK+ +KRI N TSRQV+FSKRRNG+LKKA ELA+LCDAEV V+IFS +G+ Y FSS 
Sbjct: 1   MGRGKIAIKRINNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTGRLYDFSSS 60

Query: 61  DIDGTLARYRKYVGQ-SQFNHPLSRALVWKSEMEDMNRSISSLEARLRHFSGEDLEPLTI 120
            +   + RY    G+ S  N P S    W+ E   + R + +L+   R   GE+L  L++
Sbjct: 61  SMKSVIERYSDAKGETSSENDPASEIQFWQKEAAILKRQLHNLQENHRQMMGEELSGLSV 120

Query: 121 KELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQL-KDVAET 180
           + L+ LE QL + +  VR K  +++ E    L ++   + +E+  L K++N + +   E 
Sbjct: 121 EALQNLENQLELSLRGVRMKKDQMLIEEIQVLNREGNLVHQENLDLHKKVNLMHQQNMEL 180

Query: 181 TTRISDADGVSV 191
             ++S+ +GV +
Sbjct: 181 HEKVSEVEGVKI 192

BLAST of CmaCh18G003120 vs. TAIR10
Match: AT1G69120.1 (AT1G69120.1 K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 135.6 bits (340), Expect = 3.3e-32
Identity = 74/178 (41.57%), Postives = 119/178 (66.85%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSH 60
           MGRG+V++KRIEN  +RQV+FSKRR G+LKKA+E++VLCDAEVA+V+FS  GK +++S+ 
Sbjct: 1   MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTD 60

Query: 61  D-IDGTLARYRKY-VGQSQFNHPLSRALV-WKSEMEDMNRSISSLEARLRHFSGEDLEPL 120
             ++  L RY +Y   + Q   P S     W  E   +   I  LE   RH+ GEDL+ +
Sbjct: 61  SCMEKILERYERYSYAERQLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAM 120

Query: 121 TIKELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQLKDV 176
           + KEL+ LE+QL   ++ +R++  +++ E  ++L+KK K +QE++S L K++ + + +
Sbjct: 121 SPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREKI 178

BLAST of CmaCh18G003120 vs. TAIR10
Match: AT4G11880.1 (AT4G11880.1 AGAMOUS-like 14)

HSP 1 Score: 135.6 bits (340), Expect = 3.3e-32
Identity = 80/170 (47.06%), Postives = 112/170 (65.88%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQF-SS 60
           M RGK E+KRIEN TSRQV+FSKRRNG+LKKA+EL+VLCDAEVA++IFSP GK Y+F SS
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  HDIDGTLARYRKYVGQSQFNHPLS-RALVWKSEMEDMNRSISSLEARLRHFSGEDLEPLT 120
             I  T+ RY+K +     NH  +  +   K E   + R I  LE   R   GE L+  +
Sbjct: 61  SSIPKTVERYQKRIQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASS 120

Query: 121 IKELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKR 169
           I+EL++LE QL   + ++R+K  +++ E T +LK+K + L  E+  L ++
Sbjct: 121 IEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEK 170

BLAST of CmaCh18G003120 vs. NCBI nr
Match: gi|449454816|ref|XP_004145150.1| (PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X2 [Cucumis sativus])

HSP 1 Score: 291.6 bits (745), Expect = 1.0e-75
Identity = 152/194 (78.35%), Postives = 174/194 (89.69%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSH 60
           MGRGKVE+KRIENPTSRQV+FSKRRNG+LKKAYEL+VLCDA+VA++IFSPSGKAYQFSSH
Sbjct: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60

Query: 61  DIDGTLARYRKYVGQSQFNHPLSRALVWKSEMEDMNRSISSLEARLRHFSGEDLEPLTIK 120
           D+DGTLARYR  VG  Q NHP SRAL WK+EM+DM RSISS+EARLRHF GEDLEPL +K
Sbjct: 61  DMDGTLARYRTDVGLPQSNHPHSRALFWKTEMDDMKRSISSMEARLRHFVGEDLEPLNVK 120

Query: 121 ELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQLKDVAET-T 180
           ELK+LERQ+SVGIER+RSK RRII+EH + LK+KYKGLQEEHSRLQKRLNQLKDV  T +
Sbjct: 121 ELKQLERQMSVGIERIRSKKRRIIAEHINLLKRKYKGLQEEHSRLQKRLNQLKDVVVTNS 180

Query: 181 TRISDADGVSVLEM 194
           +R SDA+  S LE+
Sbjct: 181 SRNSDANPASALEI 194

BLAST of CmaCh18G003120 vs. NCBI nr
Match: gi|778658160|ref|XP_011652201.1| (PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X1 [Cucumis sativus])

HSP 1 Score: 291.6 bits (745), Expect = 1.0e-75
Identity = 152/194 (78.35%), Postives = 174/194 (89.69%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSH 60
           MGRGKVE+KRIENPTSRQV+FSKRRNG+LKKAYEL+VLCDA+VA++IFSPSGKAYQFSSH
Sbjct: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSH 60

Query: 61  DIDGTLARYRKYVGQSQFNHPLSRALVWKSEMEDMNRSISSLEARLRHFSGEDLEPLTIK 120
           D+DGTLARYR  VG  Q NHP SRAL WK+EM+DM RSISS+EARLRHF GEDLEPL +K
Sbjct: 61  DMDGTLARYRTDVGLPQSNHPHSRALFWKTEMDDMKRSISSMEARLRHFVGEDLEPLNVK 120

Query: 121 ELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQLKDVAET-T 180
           ELK+LERQ+SVGIER+RSK RRII+EH + LK+KYKGLQEEHSRLQKRLNQLKDV  T +
Sbjct: 121 ELKQLERQMSVGIERIRSKKRRIIAEHINLLKRKYKGLQEEHSRLQKRLNQLKDVVVTNS 180

Query: 181 TRISDADGVSVLEM 194
           +R SDA+  S LE+
Sbjct: 181 SRNSDANPASALEI 194

BLAST of CmaCh18G003120 vs. NCBI nr
Match: gi|8216957|emb|CAB92396.1| (putative transcription factor [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 5.7e-74
Identity = 149/191 (78.01%), Postives = 171/191 (89.53%), Query Frame = 1

Query: 4   GKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSHDID 63
           GKVE+KRIENPTSRQV+FSKRRNG+LKKAYEL+VLCDA+VA++IFSPSGKAYQFSSHD+D
Sbjct: 1   GKVELKRIENPTSRQVTFSKRRNGLLKKAYELSVLCDAQVALLIFSPSGKAYQFSSHDMD 60

Query: 64  GTLARYRKYVGQSQFNHPLSRALVWKSEMEDMNRSISSLEARLRHFSGEDLEPLTIKELK 123
           GTLARYR  VG  Q NHP SRAL WK+EM+DM RSISS+EARLRHF GEDLEPL +KELK
Sbjct: 61  GTLARYRTDVGLPQSNHPHSRALFWKTEMDDMKRSISSMEARLRHFVGEDLEPLNVKELK 120

Query: 124 RLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQLKDVAET-TTRI 183
           +LERQ+SVGIER+RSK RRII+EH + LK+KYKGLQEEHSRLQKRLNQLKDV  T ++R 
Sbjct: 121 QLERQMSVGIERIRSKKRRIIAEHINLLKRKYKGLQEEHSRLQKRLNQLKDVVVTNSSRN 180

Query: 184 SDADGVSVLEM 194
           SDA+  S LE+
Sbjct: 181 SDANPASALEI 191

BLAST of CmaCh18G003120 vs. NCBI nr
Match: gi|1000984721|ref|XP_015579361.1| (PREDICTED: truncated transcription factor CAULIFLOWER A [Ricinus communis])

HSP 1 Score: 222.2 bits (565), Expect = 7.7e-55
Identity = 112/175 (64.00%), Postives = 149/175 (85.14%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSH 60
           MGRGKVE+KRIENPTSRQV+FSKRRNG+LKKA+EL++LCDAEV ++IFSP+G+AYQFSSH
Sbjct: 1   MGRGKVELKRIENPTSRQVTFSKRRNGLLKKAFELSILCDAEVCLLIFSPTGRAYQFSSH 60

Query: 61  DIDGTLARYRKYVGQSQFNHPLSRAL-VWKSEMEDMNRSISSLEARLRHFSGEDLEPLTI 120
           ++D T+ARYR  VG        +R+L  W++E+E++ R+I ++E RL+HFSGED+  L +
Sbjct: 61  EMDRTIARYRSEVGLLGSTDLRTRSLEYWRNEIEELKRTIDTMETRLKHFSGEDISVLGM 120

Query: 121 KELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQLKD 175
           KELK+LER L VG+ER+RSK RRIISEH + LK+K+K LQEE++RLQKRL++L+D
Sbjct: 121 KELKQLERHLKVGVERIRSKKRRIISEHINSLKRKHKVLQEENNRLQKRLHELQD 175

BLAST of CmaCh18G003120 vs. NCBI nr
Match: gi|113207067|emb|CAL36573.1| (deficiens H7 homologue [Misopates orontium])

HSP 1 Score: 221.9 bits (564), Expect = 1.0e-54
Identity = 113/195 (57.95%), Postives = 158/195 (81.03%), Query Frame = 1

Query: 1   MGRGKVEVKRIENPTSRQVSFSKRRNGVLKKAYELAVLCDAEVAVVIFSPSGKAYQFSSH 60
           MGRGKVE+KRIENPT+RQV+FSKRRNG+LKKA+EL+VLCDAEVAV+IFSPSGKAYQ++SH
Sbjct: 1   MGRGKVELKRIENPTNRQVTFSKRRNGLLKKAFELSVLCDAEVAVLIFSPSGKAYQYASH 60

Query: 61  DIDGTLARYRKYVGQSQ-FNHPLSRALVWKSEMEDMNRSISSLEARLRHFSGEDLEPLTI 120
           D   T+ARY+  VG ++  +  ++   VW++E++D+ R++ +LEAR  HFSGE+L  L +
Sbjct: 61  DTHRTIARYKSEVGLAKPGDQGITSMEVWRNEIDDLKRTVDALEARDMHFSGENLSGLGM 120

Query: 121 KELKRLERQLSVGIERVRSKMRRIISEHTSQLKKKYKGLQEEHSRLQKRLNQLKDVAETT 180
           K+LK+LERQ+ +G+ER+RSK RRII+EH + LKK++K LQEE++ LQKRL++++    + 
Sbjct: 121 KDLKQLERQIRIGVERIRSKKRRIITEHITYLKKRHKDLQEENNNLQKRLHEIQAANTSC 180

Query: 181 TRISDADGVSVLEMF 195
           + ISD+DG  V   F
Sbjct: 181 SIISDSDGTRVFPGF 195

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
MADS6_ORYSJ1.5e-3447.06MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV... [more]
MAD17_ORYSJ2.2e-3343.09MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 ... [more]
CAL_ARATH4.8e-3341.53Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3[more]
CAL_BRARR1.8e-3241.53Transcription factor CAULIFLOWER OS=Brassica rapa subsp. rapa GN=CAL PE=2 SV=1[more]
CAL_BRARP1.8e-3241.53Transcription factor CAULIFLOWER OS=Brassica rapa subsp. pekinensis GN=CAL PE=2 ... [more]
Match NameE-valueIdentityDescription
Q9AYR8_CUCSA7.2e-7678.35Putative MADS-box protein OS=Cucumis sativus GN=ERAF17 PE=2 SV=1[more]
Q9M3U2_CUCSA3.9e-7478.01Putative transcription factor (Fragment) OS=Cucumis sativus GN=cus3 PE=2 SV=1[more]
Q0JRW1_9LAMI7.0e-5557.95Deficiens H7 homologue OS=Misopates orontium GN=defh7 PE=2 SV=1[more]
A0A0D2QLE2_GOSRA1.3e-5361.71Uncharacterized protein OS=Gossypium raimondii GN=B456_007G043400 PE=4 SV=1[more]
A0A067JIE7_JATCU1.3e-5362.29Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26434 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G26310.12.7e-3441.53 K-box region and MADS-box transcription factor family protein [more]
AT2G45660.12.0e-3243.53 AGAMOUS-like 20[more]
AT3G57230.12.0e-3240.10 AGAMOUS-like 16[more]
AT1G69120.13.3e-3241.57 K-box region and MADS-box transcription factor family protein [more]
AT4G11880.13.3e-3247.06 AGAMOUS-like 14[more]
Match NameE-valueIdentityDescription
gi|449454816|ref|XP_004145150.1|1.0e-7578.35PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X2 [Cucumis... [more]
gi|778658160|ref|XP_011652201.1|1.0e-7578.35PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X1 [Cucumis... [more]
gi|8216957|emb|CAB92396.1|5.7e-7478.01putative transcription factor [Cucumis sativus][more]
gi|1000984721|ref|XP_015579361.1|7.7e-5564.00PREDICTED: truncated transcription factor CAULIFLOWER A [Ricinus communis][more]
gi|113207067|emb|CAL36573.1|1.0e-5457.95deficiens H7 homologue [Misopates orontium][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002100TF_MADSbox
IPR002487TF_Kbox
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0046983protein dimerization activity
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription from RNA polymerase II promoter
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh18G003120.1CmaCh18G003120.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 38..59
score: 1.1E-28coord: 3..23
score: 1.1E-28coord: 23..38
score: 1.1
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
score: 7.3
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
score: 3.1
IPR002100Transcription factor, MADS-boxPROFILEPS50066MADS_BOX_2coord: 1..61
score: 31
IPR002100Transcription factor, MADS-boxunknownSSF55455SRF-likecoord: 2..88
score: 6.54
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 87..169
score: 2.3
IPR002487Transcription factor, K-boxPROFILEPS51297K_BOXcoord: 85..175
score: 13
NoneNo IPR availableunknownCoilCoilcoord: 92..112
score: -coord: 148..175
scor
NoneNo IPR availablePANTHERPTHR11945MADS BOX PROTEINcoord: 2..195
score: 9.5
NoneNo IPR availablePANTHERPTHR11945:SF234SUBFAMILY NOT NAMEDcoord: 2..195
score: 9.5

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh18G003120CmaCh13G008130Cucurbita maxima (Rimu)cmacmaB218
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh18G003120Cucurbita moschata (Rifu)cmacmoB387
CmaCh18G003120Cucurbita pepo (Zucchini)cmacpeB428
CmaCh18G003120Bottle gourd (USVL1VR-Ls)cmalsiB392
CmaCh18G003120Silver-seed gourdcarcmaB0516
CmaCh18G003120Cucumber (Chinese Long) v3cmacucB0472
CmaCh18G003120Watermelon (97103) v2cmawmbB433
CmaCh18G003120Cucurbita maxima (Rimu)cmacmaB101
CmaCh18G003120Cucumber (Gy14) v1cgycmaB0436