CsGy1G004580 (gene) Cucumber (Gy14) v2
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.TATATATATATTTGAAATGAAAATTGAAAGTGTCTACAAAATCAGATACGTAGACACTATCGCCATCCCAATTCGACTCCGTAGGAAGTGGTTTGTGTTTTATTCTACAATCTCTGTGATTTTGTAAAATTAAAGGAAAAAGAAGAAGAAGGTGAAGAAGAAACTAATTTAAAGCAAATTCTCTATTTAACTAGCTACCCTGGCTTTTCATTCAAGGGTCACTTTGAACTTCGAGCTACTTTATCCTCCTCATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAATCCGACTAAATTATAAAACAAGCTTTTGTCTCCATCCACTTTCAAACTGATTTTCTCACAACCCCTTTTCATCTCTCCCCTTAAATTCATACTCAGAAACAAAGATGATTCAGAAAAGCTCAGAACGATCAGGTATTCCATACATAGTATATACATATACCATTGATTATTGTACTCACTGTTCATTTCAATTCTAGTATTCCAACCCAGAAGAGAAAAAATAAAACCACCATCAGGTAAAATTGAAATTACTTTTGAGATGTGGGTAATATATCTTATAATGAATAAACAATGTTCATGAGCAGAGAGAGAGGGTCTTAAATGCTAATGTCAGTCTGAGTATTAGAGCTTAAAAAGAGAGAGAGAGAGAGAGAGAGAGGCCAGATGGAAGGCATATTATTTTCAGAGATTTTGGTTTTGCTTTAAAAAGTAGTTTCAATTTATGAAGATAAAGGAAACTATTTAAAGGGTTAATCAAAATTCAAGGTATTTGGGGTTGTTTAAATGAGATTATTCAGTGTTTTTGAAATCTGGGTGTTTGATTTTTGAAGAAATAATTTATGGGTTTTTTGCAGAGAGGAGAAATGATTGAAGGGTAAGAGATAGAGAAGAAAAAAAAAAAAATTAAGAAAGGAGTACAGAAAAATTTAAGGTGGACTTTGCTTTTGGAAGAAAGGGGAAGAAGAAAAAGGGTTAAAGGATAGCTCTCTCTCTTTCCTGACTTGGAATGTGATATATCAATGGAGAGAAAAAGGGCTTTTTATCACTACACAGCCAAAGTACTCTGTGAGTTATCATCATCAATATGTATAGGACAGTAACCCCACCTGCACTCCATTCAACCTCCTCCTTCTTTTAAAGTTTAACTCAGAAGCCCCATTTTTTTTTTTTCTTTTTCTCTCTCTCTTAAGAGTAAAAAAAAGTATAATGGAATCCACTGTGTTGTAACCATAGGTCAAAAGAGGATGTTGTTTTTGTATAATTAGTCTTTGTTTCAGAAAGGAATGAAAGTGGTATGGAGGTGCTGGATATTCAAGAACAAGCCTGTAGGTTTCCACGAATTGGTAATGGTAGAAATGATTCCAACAAGTTAGGGCAAAAGGGTATTGTTCAATACACCCCAGATGATGAAGAAGACAAGGAATTTTCGAAAAGGGTCGCTGTTGTTACTTCTGCTACTGTTAATCCCACCGGACGATGTGAACCAGGTGGCATCGGTGGAGTTGGTGCTAATCGTCTTCATGGATGGCATCACTCGTCTCGTATTATTAGGGTTGCTCGAGCTTCTGGTGGTAAAGATCGGCACAGTAAAGTTTGGACATCGAAAGGGCTCAGAGATCGACGAGTTCGGCTTTCTGTCGCTACTGCGATTCAGTTCTACGATCTTCAAGATCGGCTTGGTTTCGAACAACCCAGCAAAGCTGTTGAGTGGCTGATCGAAGCAGCTTCCGACGCCATCGCTGAACTTCCGTCTCTGAGTGGCTCTTTCCCTGAAACTCCCAGGCAACTCAGTGACGAGAAAATGGGTAGCGATGGGGCCGACCAAGGGTTTGATTCCCCGGAAATGGAGCTCGACGGTGACCCAAAAAAACACCAACAGAATCCGAGACAGCAGCTTTCATTGGCGAGGTCTGCTTGTAGTAGTAACTCAGAGACGAGCAAGGGCTCGGGATTGTCTCTCTCCCGCTCTGAAATCCTAGTGAATCGAGCGAAGGCACGTGACAGAGCAAGAGAGAGAACTGCGAAAGAGAAGGAAAGAGAGCAAGAATCTCGCGATGCTCATTGCATTCCCAACAACCCATCTTTCACTGAGCTTCTCACCGGCGGTATCAACAATAACGGCGCCAATAACACCACCAATCGGACGAATTCAGCCTCGCAAAACAATGTAGTGGAGCCGAATTTGTTCGACAAGGCAACGGCCATGGATTACTTAGCCTCTTCTGGGATTATAGCCCAACAACCGTCGTCGTCTTCATCTTCACGGCCTGGCCATAATCAATCTGCGGGATTTTCAGGGCAAATCTTTTTGGGGAATCCACACCAATTGCCAGTGTCGATTCCACAATTTAACATCTCAGCCGCTGAAAATACTCAACAAGATCGGCTTCAACATTTCTCGTTCGTCCCAGATAATTTGAACGACTATAATCTTAACTTCACCATCTCTGCCGGCCTTGCTGGTTGCAATAGGGGGACCCTTCAGTCCAATATTTCACCGTCTTTTTTGCCTTACCTCCAGAGGTTTCCTCACTTAGAGGGATCAAACGTACCCTTTTTCATCGGAGCTGCATCGCCAACGACGGCGACGACTCCCGTACAGTTGGAAAATCACCATCAGTTGACACCAGCATTGTTTGATGGTAGCTGGCAACTCTGTTATGCTGATGGAAGCCATCACTCAGATCAAAAGGGTAAAGGAAAGAACTGA TATATATATATTTGAAATGAAAATTGAAAGTGTCTACAAAATCAGATACGTAGACACTATCGCCATCCCAATTCGACTCCGTAGGAAGTGGTTTGTGTTTTATTCTACAATCTCTGTGATTTTGTAAAATTAAAGGAAAAAGAAGAAGAAGGTGAAGAAGAAACTAATTTAAAGCAAATTCTCTATTTAACTAGCTACCCTGGCTTTTCATTCAAGGGTCACTTTGAACTTCGAGCTACTTTATCCTCCTCATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTTCTTCTTCTTCTTCTTCAAATCCGACTAAATTATAAAACAAGCTTTTGTCTCCATCCACTTTCAAACTGATTTTCTCACAACCCCTTTTCATCTCTCCCCTTAAATTCATACTCAGAAACAAAGATGATTCAGAAAAGCTCAGAACGATCAGAAAGGAATGAAAGTGGTATGGAGGTGCTGGATATTCAAGAACAAGCCTGTAGGTTTCCACGAATTGGTAATGGTAGAAATGATTCCAACAAGTTAGGGCAAAAGGGTATTGTTCAATACACCCCAGATGATGAAGAAGACAAGGAATTTTCGAAAAGGGTCGCTGTTGTTACTTCTGCTACTGTTAATCCCACCGGACGATGTGAACCAGGTGGCATCGGTGGAGTTGGTGCTAATCGTCTTCATGGATGGCATCACTCGTCTCGTATTATTAGGGTTGCTCGAGCTTCTGGTGGTAAAGATCGGCACAGTAAAGTTTGGACATCGAAAGGGCTCAGAGATCGACGAGTTCGGCTTTCTGTCGCTACTGCGATTCAGTTCTACGATCTTCAAGATCGGCTTGGTTTCGAACAACCCAGCAAAGCTGTTGAGTGGCTGATCGAAGCAGCTTCCGACGCCATCGCTGAACTTCCGTCTCTGAGTGGCTCTTTCCCTGAAACTCCCAGGCAACTCAGTGACGAGAAAATGGGTAGCGATGGGGCCGACCAAGGGTTTGATTCCCCGGAAATGGAGCTCGACGGTGACCCAAAAAAACACCAACAGAATCCGAGACAGCAGCTTTCATTGGCGAGGTCTGCTTGTAGTAGTAACTCAGAGACGAGCAAGGGCTCGGGATTGTCTCTCTCCCGCTCTGAAATCCTAGTGAATCGAGCGAAGGCACGTGACAGAGCAAGAGAGAGAACTGCGAAAGAGAAGGAAAGAGAGCAAGAATCTCGCGATGCTCATTGCATTCCCAACAACCCATCTTTCACTGAGCTTCTCACCGGCGGTATCAACAATAACGGCGCCAATAACACCACCAATCGGACGAATTCAGCCTCGCAAAACAATGTAGTGGAGCCGAATTTGTTCGACAAGGCAACGGCCATGGATTACTTAGCCTCTTCTGGGATTATAGCCCAACAACCGTCGTCGTCTTCATCTTCACGGCCTGGCCATAATCAATCTGCGGGATTTTCAGGGCAAATCTTTTTGGGGAATCCACACCAATTGCCAGTGTCGATTCCACAATTTAACATCTCAGCCGCTGAAAATACTCAACAAGATCGGCTTCAACATTTCTCGTTCGTCCCAGATAATTTGAACGACTATAATCTTAACTTCACCATCTCTGCCGGCCTTGCTGGTTGCAATAGGGGGACCCTTCAGTCCAATATTTCACCGTCTTTTTTGCCTTACCTCCAGAGGTTTCCTCACTTAGAGGGATCAAACGTACCCTTTTTCATCGGAGCTGCATCGCCAACGACGGCGACGACTCCCGTACAGTTGGAAAATCACCATCAGTTGACACCAGCATTGTTTGATGGTAGCTGGCAACTCTGTTATGCTGATGGAAGCCATCACTCAGATCAAAAGGGTAAAGGAAAGAACTGA ATGATTCAGAAAAGCTCAGAACGATCAGAAAGGAATGAAAGTGGTATGGAGGTGCTGGATATTCAAGAACAAGCCTGTAGGTTTCCACGAATTGGTAATGGTAGAAATGATTCCAACAAGTTAGGGCAAAAGGGTATTGTTCAATACACCCCAGATGATGAAGAAGACAAGGAATTTTCGAAAAGGGTCGCTGTTGTTACTTCTGCTACTGTTAATCCCACCGGACGATGTGAACCAGGTGGCATCGGTGGAGTTGGTGCTAATCGTCTTCATGGATGGCATCACTCGTCTCGTATTATTAGGGTTGCTCGAGCTTCTGGTGGTAAAGATCGGCACAGTAAAGTTTGGACATCGAAAGGGCTCAGAGATCGACGAGTTCGGCTTTCTGTCGCTACTGCGATTCAGTTCTACGATCTTCAAGATCGGCTTGGTTTCGAACAACCCAGCAAAGCTGTTGAGTGGCTGATCGAAGCAGCTTCCGACGCCATCGCTGAACTTCCGTCTCTGAGTGGCTCTTTCCCTGAAACTCCCAGGCAACTCAGTGACGAGAAAATGGGTAGCGATGGGGCCGACCAAGGGTTTGATTCCCCGGAAATGGAGCTCGACGGTGACCCAAAAAAACACCAACAGAATCCGAGACAGCAGCTTTCATTGGCGAGGTCTGCTTGTAGTAGTAACTCAGAGACGAGCAAGGGCTCGGGATTGTCTCTCTCCCGCTCTGAAATCCTAGTGAATCGAGCGAAGGCACGTGACAGAGCAAGAGAGAGAACTGCGAAAGAGAAGGAAAGAGAGCAAGAATCTCGCGATGCTCATTGCATTCCCAACAACCCATCTTTCACTGAGCTTCTCACCGGCGGTATCAACAATAACGGCGCCAATAACACCACCAATCGGACGAATTCAGCCTCGCAAAACAATGTAGTGGAGCCGAATTTGTTCGACAAGGCAACGGCCATGGATTACTTAGCCTCTTCTGGGATTATAGCCCAACAACCGTCGTCGTCTTCATCTTCACGGCCTGGCCATAATCAATCTGCGGGATTTTCAGGGCAAATCTTTTTGGGGAATCCACACCAATTGCCAGTGTCGATTCCACAATTTAACATCTCAGCCGCTGAAAATACTCAACAAGATCGGCTTCAACATTTCTCGTTCGTCCCAGATAATTTGAACGACTATAATCTTAACTTCACCATCTCTGCCGGCCTTGCTGGTTGCAATAGGGGGACCCTTCAGTCCAATATTTCACCGTCTTTTTTGCCTTACCTCCAGAGGTTTCCTCACTTAGAGGGATCAAACGTACCCTTTTTCATCGGAGCTGCATCGCCAACGACGGCGACGACTCCCGTACAGTTGGAAAATCACCATCAGTTGACACCAGCATTGTTTGATGGTAGCTGGCAACTCTGTTATGCTGATGGAAGCCATCACTCAGATCAAAAGGGTAAAGGAAAGAACTGA MIQKSSERSERNESGMEVLDIQEQACRFPRIGNGRNDSNKLGQKGIVQYTPDDEEDKEFSKRVAVVTSATVNPTGRCEPGGIGGVGANRLHGWHHSSRIIRVARASGGKDRHSKVWTSKGLRDRRVRLSVATAIQFYDLQDRLGFEQPSKAVEWLIEAASDAIAELPSLSGSFPETPRQLSDEKMGSDGADQGFDSPEMELDGDPKKHQQNPRQQLSLARSACSSNSETSKGSGLSLSRSEILVNRAKARDRARERTAKEKEREQESRDAHCIPNNPSFTELLTGGINNNGANNTTNRTNSASQNNVVEPNLFDKATAMDYLASSGIIAQQPSSSSSSRPGHNQSAGFSGQIFLGNPHQLPVSIPQFNISAAENTQQDRLQHFSFVPDNLNDYNLNFTISAGLAGCNRGTLQSNISPSFLPYLQRFPHLEGSNVPFFIGAASPTTATTPVQLENHHQLTPALFDGSWQLCYADGSHHSDQKGKGKN
BLAST of CsGy1G004580 vs. NCBI nr
Match: XP_011649359.1 (PREDICTED: transcription factor TCP2 [Cucumis sativus] >XP_011649361.1 PREDICTED: transcription factor TCP2 [Cucumis sativus] >XP_011649362.1 PREDICTED: transcription factor TCP2 [Cucumis sativus]) HSP 1 Score: 797.7 bits (2059), Expect = 2.1e-227 Identity = 471/471 (100.00%), Postives = 471/471 (100.00%), Query Frame = 0
BLAST of CsGy1G004580 vs. NCBI nr
Match: XP_008444530.1 (PREDICTED: transcription factor TCP2-like [Cucumis melo] >XP_016899575.1 PREDICTED: transcription factor TCP2-like [Cucumis melo]) HSP 1 Score: 792.7 bits (2046), Expect = 6.9e-226 Identity = 468/471 (99.36%), Postives = 470/471 (99.79%), Query Frame = 0
BLAST of CsGy1G004580 vs. NCBI nr
Match: KGN63911.1 (hypothetical protein Csa_1G025920 [Cucumis sativus]) HSP 1 Score: 647.9 bits (1670), Expect = 2.7e-182 Identity = 404/404 (100.00%), Postives = 404/404 (100.00%), Query Frame = 0
BLAST of CsGy1G004580 vs. NCBI nr
Match: XP_022954533.1 (transcription factor TCP2-like [Cucurbita moschata] >XP_022954534.1 transcription factor TCP2-like [Cucurbita moschata]) HSP 1 Score: 586.6 bits (1511), Expect = 7.5e-164 Identity = 378/475 (79.58%), Postives = 394/475 (82.95%), Query Frame = 0
BLAST of CsGy1G004580 vs. NCBI nr
Match: XP_022994806.1 (transcription factor TCP2-like [Cucurbita maxima]) HSP 1 Score: 584.3 bits (1505), Expect = 3.7e-163 Identity = 378/474 (79.75%), Postives = 394/474 (83.12%), Query Frame = 0
BLAST of CsGy1G004580 vs. TAIR10
Match: AT4G18390.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2) HSP 1 Score: 148.7 bits (374), Expect = 9.5e-36 Identity = 177/409 (43.28%), Postives = 212/409 (51.83%), Query Frame = 0
BLAST of CsGy1G004580 vs. TAIR10
Match: AT1G30210.1 (TEOSINTE BRANCHED 1, cycloidea, and PCF family 24) HSP 1 Score: 133.7 bits (335), Expect = 3.2e-31 Identity = 67/85 (78.82%), Postives = 77/85 (90.59%), Query Frame = 0
BLAST of CsGy1G004580 vs. TAIR10
Match: AT3G02150.2 (plastid transcription factor 1) HSP 1 Score: 109.0 bits (271), Expect = 8.3e-24 Identity = 56/84 (66.67%), Postives = 66/84 (78.57%), Query Frame = 0
BLAST of CsGy1G004580 vs. TAIR10
Match: AT5G60970.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5) HSP 1 Score: 107.1 bits (266), Expect = 3.2e-23 Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 0
BLAST of CsGy1G004580 vs. TAIR10
Match: AT5G08070.1 (TCP domain protein 17) HSP 1 Score: 103.2 bits (256), Expect = 4.6e-22 Identity = 53/92 (57.61%), Postives = 66/92 (71.74%), Query Frame = 0
BLAST of CsGy1G004580 vs. Swiss-Prot
Match: sp|Q93V43|TCP2_ARATH (Transcription factor TCP2 OS=Arabidopsis thaliana OX=3702 GN=TCP2 PE=1 SV=1) HSP 1 Score: 148.7 bits (374), Expect = 1.7e-34 Identity = 177/409 (43.28%), Postives = 212/409 (51.83%), Query Frame = 0
BLAST of CsGy1G004580 vs. Swiss-Prot
Match: sp|Q9C758|TCP24_ARATH (Transcription factor TCP24 OS=Arabidopsis thaliana OX=3702 GN=TCP24 PE=1 SV=1) HSP 1 Score: 133.7 bits (335), Expect = 5.7e-30 Identity = 67/85 (78.82%), Postives = 77/85 (90.59%), Query Frame = 0
BLAST of CsGy1G004580 vs. Swiss-Prot
Match: sp|A2XMN1|PCF6_ORYSI (Transcription factor PCF6 OS=Oryza sativa subsp. indica OX=39946 GN=PCF6 PE=4 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 8.5e-26 Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 0
BLAST of CsGy1G004580 vs. Swiss-Prot
Match: sp|Q10CE8|PCF6_ORYSJ (Transcription factor PCF6 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF6 PE=2 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 8.5e-26 Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 0
BLAST of CsGy1G004580 vs. Swiss-Prot
Match: sp|A2ZMR9|PCF8_ORYSI (Transcription factor PCF8 OS=Oryza sativa subsp. indica OX=39946 GN=PCF8 PE=4 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 1.5e-22 Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 0
BLAST of CsGy1G004580 vs. TrEMBL
Match: tr|A0A1S4DV39|A0A1S4DV39_CUCME (transcription factor TCP2-like OS=Cucumis melo OX=3656 GN=LOC103487819 PE=4 SV=1) HSP 1 Score: 792.7 bits (2046), Expect = 4.6e-226 Identity = 468/471 (99.36%), Postives = 470/471 (99.79%), Query Frame = 0
BLAST of CsGy1G004580 vs. TrEMBL
Match: tr|A0A0A0LV70|A0A0A0LV70_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025920 PE=4 SV=1) HSP 1 Score: 647.9 bits (1670), Expect = 1.8e-182 Identity = 404/404 (100.00%), Postives = 404/404 (100.00%), Query Frame = 0
BLAST of CsGy1G004580 vs. TrEMBL
Match: tr|A0A2I4EJY3|A0A2I4EJY3_9ROSI (transcription factor TCP2-like OS=Juglans regia OX=51240 GN=LOC108990257 PE=4 SV=1) HSP 1 Score: 372.9 bits (956), Expect = 1.1e-99 Identity = 287/491 (58.45%), Postives = 334/491 (68.02%), Query Frame = 0
BLAST of CsGy1G004580 vs. TrEMBL
Match: tr|A0A0D2UNY1|A0A0D2UNY1_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G046000 PE=4 SV=1) HSP 1 Score: 369.8 bits (948), Expect = 9.6e-99 Identity = 304/497 (61.17%), Postives = 345/497 (69.42%), Query Frame = 0
BLAST of CsGy1G004580 vs. TrEMBL
Match: tr|A0A1U8K5Z2|A0A1U8K5Z2_GOSHI (transcription factor TCP2 OS=Gossypium hirsutum OX=3635 GN=LOC107913803 PE=4 SV=1) HSP 1 Score: 367.1 bits (941), Expect = 6.2e-98 Identity = 307/497 (61.77%), Postives = 348/497 (70.02%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|