Cp4.1LG20g05310 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG20g05310
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Signal recognition particle 14 kDa family protein
Location	Cp4.1LG20 : 3118291 .. 3121748 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAGTGACCAACGGAAAACGTACCGAACCAACTCGATCCACCTGGTCGACTGGTTCGGATTGGTTCACTCATACAGACAACCAAATCGGTCGGTTCGATTAAACCGAACTGATTTACACCCCTAGGAGGTCCGATTTTGTTATCGGACAAAAAGTATAATTGTTTTCCCTCTCTCTGTCGCTACTGGATCGTCTACTCCGTTGAACGGACGTCGATCGGACCAGGCCATCGTGCTTCTCAAGATCCATACCATAGCCGTCGCCATCGCCATCGCCATCGCCATCGCCATGGTAGTTTCCTTTTCTCTTCGTCTTACTCATGTCTTGATTGAACTCTTCTACATTTTCACGATACAGCTACCTCGATTGTTGAAAACGCTGTTCTAATCTGCATTTTAATCATTGATCTTGATGACAGAATTTGACCTAATTAACGGAGTGTATGTCGGTCGGAGAAATTAGTTTTTACTTCCGTTTGGATATATGTGTACATGTTCTTTCAGGATTTTTCTTGTTAATTATTGGAATTATGGGTCTGTCAAATTCAAGTTGCGTGTACTGCATTGCACACTTTCTCCAGTTCCACGGGCACTACTCAGCTGGGTCTCCTTTTCAATGGTTGGTTTTTCTATTTGAGCGGAGAAAATTGGGCCTAGTTGTGTGTTTCTGATCTTAATCATGATATAATGTCTAGTTGATCACATTTTTGGGTTTTTATTGGCTGATAATCTTGGTATGAATCAATTCTGTTGCACGAATTTTAGTTCTCTCATTCAAATTTGGCAAAAAGAATTGTCGAATTTGTCAAGTTAGACTCTTCAATGGCAGTTTGGTCCGTAACAAACTACCAATCAATGGACTTATTCCCTTATGGTAGAAAATGACAAAAGAATATATCGACTGGTTGATGGTATTGGCTGAACTAGGATAAACGGTTCAAGTGCTATGTCACATCATTTGCTCCCTTGAATGTTACACTCGCTTTTGAGTTTATTCGGCCAATTCGTATTCATATGGTTCATGATACTTCGCAAAGTCTTGAGTAGCTAAACTTTAGAAGTATGTAAGTTATATGGTATTTGAATCCATAGTTTGTTAGAAATTCCTATTGGACAAGACATACCGTGATGTAGAAGGATTGTTAGGTTATTTGTATACATAATTTAACATTACTTTAGTTGTTAGATTAATTAGTTAATTATCTTATTTTCTTGTAAGACTATAAATAGCCACTTTCGGATTGTAATAGGAAGCTTTTGAATCATTTTGAAATAGAACTTTGTTCTTAAAGTCTTCTCTCAACTTTTGGGATGGATTTCTCCTGTTTGGACATGGATTTAGCCTCATACCCAAACTCGCTGCATCACACTGTCCTATGGTCCCTGTGTTTATTTGCAGCTTCTGCATATTTTGGATTAGTCTTGGGGATTTTTTTCTCCCAACACTTCCTCATGCAACCTTGTAATTTTCTCTGCCAATGGTCCAATAGAAAGAATTTTAGGATCTCTCTCACTCAAGGCTTTATATATAGACTCAACTATCCTGTTGTTAAATTTGAATATGTATTGAGCTAAGGATAAGTCCTGATGTTGAGGTGTTTATATTTTAAGCACTGTAATAGGTTCCCCAATGTTTTCTTTCTAACTTTGTTTGATTGAAATTTTAGCTTCCATTGAATCGAAAAGCCAGATCGACCGACCCTTATGGTTTGATTAATGATCACTGAACGTACAAATTCTTTCTTCAAAGAGTTCAAAGAGAAGTGATCCCACTGTTTATATGAGCTCACCCAGGCATATACACTCATGAGTTTCCACCAAAGAGAGGATTCACTATTGGAATTGTGTACAGTTGCCAAAAATTTACTGCAGTCGGAAATGTTGTTGCTAAAATCTTGCAGATTCTACTTGGAAGTCATGTGTACATACCAGGATCATGGTGCTTACATATCACTTCGGTGTAGGATTAGCAGAAGATTTCAAATCTATTGAAGATGTACGCTTGTAGAGTCTGAAAATAACTAAGGTTTGATAGGATTGACTGTATGTCGCAGAAAATGACAAGAAACATCAAACAACCGAGAAATTAAGTAAATGGAAAAGTGGCAAGAACACAATTGCAGTATCAGGTTTAGTTGTTGTCTCACTGGTATTTGAACAATACTTGAACTGGCTTGATTTATGGAATTTATTTGTCCGAACAGTGAGATGCGCATAATTGGCATTATTTGTTTTACTGATATTGGGACAACAATCAAAATCATATGTTTATGGAATCTATCCATCCAAATTCTGAAATGTATGCATAATTAACATCATATGTTTCATTCAAGAACAAGATACTTTAGTTTGATTTTGACGTTGTTAAGTTCCTATTCTTTTGATTTAGGTTCTACTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCCTGTTTGAGCGCAGTACCGAGAAGGGTTCAGTCTGGGTTACTCTAAAACGCTGTATGTGCATATCAGCGTTGTTGATTTGTTTCATGTACTTTTTTGGTAATATCTAGGAGTCTGATTAGGTTTAAACTATCTTGTATCTCATATTGTTGTAGCATCACTGAAGTCCAAAGTGCAGAGAAATAAAATGACCACTGCTGGTCAACCCATCGAGTATCGATGCCTCATTCGTGCAACTGACGGAAAGAAGACAATTTCAACTTCTGTAAGTATTCACTCATCTCCTACAGTCTTCCCCCCTCTCCTCTTCTCTCTCTCTTCTTAATTGTAAATTTGGCTTCAGCATTCAAGTTTTTCTAGTAAATTCTAAATCTACTCAAGCTAAGGATGCTGTGTTTAGACCTCGTTTCTTTATGAACTAGTTTTTTCTTCCGCTTGAGTTTTGAATCATCTTTTATTCGTTTTCATTCTTTTTGGCAATCATAAACCAAACCCTTTATTAGAACTTCAATAAGCATGTAGCCATTTCACATGCTTCAGATCTTATTATCTTTATTATTTCGGAGGTTTCGAACTTGAATCCGAAGCATTTGTAACATTTTCCCATGAACTGGCTAGGTTGGAGCAAAAGATCACCTGAGATTTCAAGCTTCCTACTCAACCATTCTTAAAGCCCACATGACTGCTCTCAAAAAGAGAGAGAGAAAGGACAAGAAGAAGGCAGCAGAGGCAGAGAAGGGTCTGAAGAAAAAACCCAGGAAAGTGTAAAGAGAGGCTCTCTTGCTTCTGTAGGTCCTCAAGGTAGTGTAACTATTTCTTTGTTACCTTTGTTTTCACGATGATCCTTTGACCTGATGATGAGTGTTATGCTTTCCCATAATTTCTTGGAATGAAGAGGGAAGAATACTTGATCTTGTCCTTTGCTTGGCCATTTTTTTTACTTACAACAAGATTTATAATATACATGTAATTTTACTGTAGAATTGTCTGGAAGTAACTACTTTTGGTTCATTTAAGCAGAATACAGACTT

mRNA sequence

CAAGTGACCAACGGAAAACGTACCGAACCAACTCGATCCACCTGGTCGACTGGTTCGGATTGGTTCACTCATACAGACAACCAAATCGGTCGTATAATTGTTTTCCCTCTCTCTGTCGCTACTGGATCGTCTACTCCGTTGAACGGACGTCGATCGGACCAGGCCATCGTGCTTCTCAAGATCCATACCATAGCCGTCGCCATCGCCATCGCCATCGCCATCGCCATGGTTCTACTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCCTGTTTGAGCGCAGTACCGAGAAGGGTTCAGTCTGGGTTACTCTAAAACGCTCATCACTGAAGTCCAAAGTGCAGAGAAATAAAATGACCACTGCTGGTCAACCCATCGAGTATCGATGCCTCATTCGTGCAACTGACGGAAAGAAGACAATTTCAACTTCTGTTGGAGCAAAAGATCACCTGAGATTTCAAGCTTCCTACTCAACCATTCTTAAAGCCCACATGACTGCTCTCAAAAAGAGAGAGAGAAAGGACAAGAAGAAGGCAGCAGAGGCAGAGAAGGGTCTGAAGAAAAAACCCAGGAAAGTGTAAAGAGAGGCTCTCTTGCTTCTGTAGGTCCTCAAGGTAGTGTAACTATTTCTTTGTTACCTTTGTTTTCACGATGATCCTTTGACCTGATGATGAGTGTTATGCTTTCCCATAATTTCTTGGAATGAAGAGGGAAGAATACTTGATCTTGTCCTTTGCTTGGCCATTTTTTTTACTTACAACAAGATTTATAATATACATGTAATTTTACTGTAGAATTGTCTGGAAGTAACTACTTTTGGTTCATTTAAGCAGAATACAGACTT

Coding sequence (CDS)

CAAGTGACCAACGGAAAACGTACCGAACCAACTCGATCCACCTGGTCGACTGGTTCGGATTGGTTCACTCATACAGACAACCAAATCGGTCGTATAATTGTTTTCCCTCTCTCTGTCGCTACTGGATCGTCTACTCCGTTGAACGGACGTCGATCGGACCAGGCCATCGTGCTTCTCAAGATCCATACCATAGCCGTCGCCATCGCCATCGCCATCGCCATCGCCATGGTTCTACTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCCTGTTTGAGCGCAGTACCGAGAAGGGTTCAGTCTGGGTTACTCTAAAACGCTCATCACTGAAGTCCAAAGTGCAGAGAAATAAAATGACCACTGCTGGTCAACCCATCGAGTATCGATGCCTCATTCGTGCAACTGACGGAAAGAAGACAATTTCAACTTCTGTTGGAGCAAAAGATCACCTGAGATTTCAAGCTTCCTACTCAACCATTCTTAAAGCCCACATGACTGCTCTCAAAAAGAGAGAGAGAAAGGACAAGAAGAAGGCAGCAGAGGCAGAGAAGGGTCTGAAGAAAAAACCCAGGAAAGTGTAA

Protein sequence

QVTNGKRTEPTRSTWSTGSDWFTHTDNQIGRIIVFPLSVATGSSTPLNGRRSDQAIVLLKIHTIAVAIAIAIAIAMVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV

Homology

[Close]

BLAST of Cp4.1LG20g05310 vs. Swiss-Prot
Match: SRP14_ARATH (Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana GN=SRP14 PE=2 SV=2)

HSP 1 Score: 179.5 bits (454), Expect = 3.5e-44
Identity = 92/109 (84.40%), Postives = 103/109 (94.50%), Query Frame = 1


Query: 76  MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 135
           MVLLQLDPFLNELTS+FE+S EKGSVWVTLKRSSLKSKVQ+ K+++ G+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60

Query: 136 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK 185
           DGKKT+STSVGAKDH RFQASY+TILKAHMTALKKRERKD+KK+ EAEK
Sbjct: 61  DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEK 109

[Close]

BLAST of Cp4.1LG20g05310 vs. Swiss-Prot
Match: SRP14_ORYSJ (Signal recognition particle 14 kDa protein OS=Oryza sativa subsp. japonica GN=SRP14 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.2e-36
Identity = 80/117 (68.38%), Postives = 100/117 (85.47%), Query Frame = 1


Query: 76  MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 135
           MV+LQ DPFL+ELTS++ERSTEKGSVWVT+KRSS+K + +  KM   G+ +EYRCL+RAT
Sbjct: 1   MVVLQPDPFLSELTSMYERSTEKGSVWVTMKRSSMKCQARLKKMAAKGEAVEYRCLVRAT 60

Query: 136 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRK 193
           DGKK I T++ AK++L+FQASY+T+LKAHM ALKKRERKDKKKAAE EK  +K P+K
Sbjct: 61  DGKKNICTALSAKEYLKFQASYATVLKAHMHALKKRERKDKKKAAEVEKIPEKAPKK 117

[Close]

BLAST of Cp4.1LG20g05310 vs. Swiss-Prot
Match: SRP14_HUMAN (Signal recognition particle 14 kDa protein OS=Homo sapiens GN=SRP14 PE=1 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-17
Identity = 51/108 (47.22%), Postives = 75/108 (69.44%), Query Frame = 1


Query: 76  MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAG-QPIEYRCLIRA 135
           MVLL+ + FL ELT LF++    GSV++TLK+   ++K    K T  G +P + +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60

Query: 136 TDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEA 183
           TDGKK IST V +K+  +FQ +YS +L+A+M  LKKR++K+K K  +A
Sbjct: 61  TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKA 108

[Close]

BLAST of Cp4.1LG20g05310 vs. Swiss-Prot
Match: SRP14_MACFA (Signal recognition particle 14 kDa protein OS=Macaca fascicularis GN=SRP14 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-17
Identity = 51/108 (47.22%), Postives = 75/108 (69.44%), Query Frame = 1


Query: 76  MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAG-QPIEYRCLIRA 135
           MVLL+ + FL ELT LF++    GSV++TLK+   ++K    K T  G +P + +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60

Query: 136 TDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEA 183
           TDGKK IST V +K+  +FQ +YS +L+A+M  LKKR++K+K K  +A
Sbjct: 61  TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKA 108

[Close]

BLAST of Cp4.1LG20g05310 vs. Swiss-Prot
Match: SRP14_PONAB (Signal recognition particle 14 kDa protein OS=Pongo abelii GN=SRP14 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.2e-17
Identity = 51/108 (47.22%), Postives = 75/108 (69.44%), Query Frame = 1


Query: 76  MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAG-QPIEYRCLIRA 135
           MVLL+ + FL ELT LF++    GSV++TLK+   ++K    K T  G +P + +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60

Query: 136 TDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEA 183
           TDGKK IST V +K+  +FQ +YS +L+A+M  LKKR++K+K K  +A
Sbjct: 61  TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKA 108

[Close]

BLAST of Cp4.1LG20g05310 vs. TrEMBL
Match: A0A0A0LYE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G534730 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.0e-53
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 76  MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 135
           MVLLQLDPFLNELTS+FERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 136 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 194
           DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV
Sbjct: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118

[Close]

BLAST of Cp4.1LG20g05310 vs. TrEMBL
Match: I3SA11_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.2e-45
Identity = 104/119 (87.39%), Postives = 111/119 (93.28%), Query Frame = 1


Query: 76  MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 135
           MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNK+ TAG+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKLATAGEAIEYRCLIRAT 60

Query: 136 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK--GLKKKPRK 193
           DGKKTISTSVG KDH RFQASY+TILKAHMTALKKRERKDKKK+AEA+K  G  K+P+K
Sbjct: 61  DGKKTISTSVGPKDHQRFQASYATILKAHMTALKKRERKDKKKSAEADKREGSSKRPKK 119

[Close]

BLAST of Cp4.1LG20g05310 vs. TrEMBL
Match: A9PBY0_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 5.0e-45
Identity = 100/121 (82.64%), Postives = 114/121 (94.21%), Query Frame = 1


Query: 76  MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 135
           MVLLQLDPFLNELT+L++ ST+KGS+WVTLKRSS+KSKVQRNKMTT G+PIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTTLYQNSTDKGSIWVTLKRSSMKSKVQRNKMTTNGEPIEYRCLIRAT 60

Query: 136 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK---GLKKKPRK 194
           DGKKTISTSVGA+DH RFQASY+TILKAHMTALKKRERKDKKKAAE++K    +KKKP++
Sbjct: 61  DGKKTISTSVGARDHQRFQASYATILKAHMTALKKRERKDKKKAAESDKKEGDVKKKPKR 120

[Close]

BLAST of Cp4.1LG20g05310 vs. TrEMBL
Match: B9N603_POPTR (Signal recognition particle 14 kDa family protein OS=Populus trichocarpa GN=POPTR_0013s12890g PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 6.5e-45
Identity = 100/121 (82.64%), Postives = 113/121 (93.39%), Query Frame = 1


Query: 76  MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 135
           MVLLQLDPFLNELT+L++ ST+KGS+WVTLKRSS+KSKVQRNKMTT G+PIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTTLYQNSTDKGSIWVTLKRSSMKSKVQRNKMTTNGEPIEYRCLIRAT 60

Query: 136 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK---GLKKKPRK 194
           DGKKTISTSVGA+DH RFQASY+TILKAHMTALKKRERKDKKKAAE +K    +KKKP++
Sbjct: 61  DGKKTISTSVGARDHQRFQASYATILKAHMTALKKRERKDKKKAAEGDKKEGDVKKKPKR 120

[Close]

BLAST of Cp4.1LG20g05310 vs. TrEMBL
Match: C6T2Q3_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-43
Identity = 101/119 (84.87%), Postives = 109/119 (91.60%), Query Frame = 1


Query: 76  MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 135
           MVLLQLDPFLNELTS+FERST+ GSVWVTLKRSSLKSKVQRNK+ TAG+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTKLGSVWVTLKRSSLKSKVQRNKLATAGEAIEYRCLIRAT 60

Query: 136 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK--GLKKKPRK 193
           DGKKTISTSVG KDH RFQASY+TILKAHMTALKKRERKDKKK AEA+K  G  K+P+K
Sbjct: 61  DGKKTISTSVGPKDHQRFQASYATILKAHMTALKKRERKDKKKPAEADKREGSSKRPKK 119

[Close]

BLAST of Cp4.1LG20g05310 vs. TAIR10
Match: AT2G43640.1 (AT2G43640.1 Signal recognition particle, SRP9/SRP14 subunit)

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-45
Identity = 92/109 (84.40%), Postives = 103/109 (94.50%), Query Frame = 1


Query: 76  MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 135
           MVLLQLDPFLNELTS+FE+S EKGSVWVTLKRSSLKSKVQ+ K+++ G+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60

Query: 136 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK 185
           DGKKT+STSVGAKDH RFQASY+TILKAHMTALKKRERKD+KK+ EAEK
Sbjct: 61  DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEK 109

[Close]

BLAST of Cp4.1LG20g05310 vs. NCBI nr
Match: gi|449454975|ref|XP_004145229.1| (PREDICTED: signal recognition particle 14 kDa protein [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 1.4e-53
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 76  MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 135
           MVLLQLDPFLNELTS+FERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 136 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 194
           DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV
Sbjct: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118

[Close]

BLAST of Cp4.1LG20g05310 vs. NCBI nr
Match: gi|388498074|gb|AFK37103.1| (unknown [Lotus japonicus])

HSP 1 Score: 190.3 bits (482), Expect = 3.2e-45
Identity = 104/119 (87.39%), Postives = 111/119 (93.28%), Query Frame = 1


Query: 76  MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 135
           MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNK+ TAG+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKLATAGEAIEYRCLIRAT 60

Query: 136 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK--GLKKKPRK 193
           DGKKTISTSVG KDH RFQASY+TILKAHMTALKKRERKDKKK+AEA+K  G  K+P+K
Sbjct: 61  DGKKTISTSVGPKDHQRFQASYATILKAHMTALKKRERKDKKKSAEADKREGSSKRPKK 119

[Close]

BLAST of Cp4.1LG20g05310 vs. NCBI nr
Match: gi|743884944|ref|XP_011037413.1| (PREDICTED: signal recognition particle 14 kDa protein [Populus euphratica])

HSP 1 Score: 189.1 bits (479), Expect = 7.1e-45
Identity = 100/121 (82.64%), Postives = 114/121 (94.21%), Query Frame = 1


Query: 76  MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 135
           MVLLQLDPFLNELT+L++ ST+KGS+WVTLKRSS+KSKVQRNKMTT G+PIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTTLYQNSTDKGSIWVTLKRSSMKSKVQRNKMTTNGEPIEYRCLIRAT 60

Query: 136 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK---GLKKKPRK 194
           DGKKTISTSVGA+DH RFQASY+TILKAHMTALKKRERKDKKKAAE++K    +KKKP++
Sbjct: 61  DGKKTISTSVGARDHQRFQASYATILKAHMTALKKRERKDKKKAAESDKKEGDVKKKPKR 120

[Close]

BLAST of Cp4.1LG20g05310 vs. NCBI nr
Match: gi|566201009|ref|XP_006376420.1| (signal recognition particle 14 kDa family protein [Populus trichocarpa])

HSP 1 Score: 188.7 bits (478), Expect = 9.3e-45
Identity = 100/121 (82.64%), Postives = 113/121 (93.39%), Query Frame = 1


Query: 76  MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 135
           MVLLQLDPFLNELT+L++ ST+KGS+WVTLKRSS+KSKVQRNKMTT G+PIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTTLYQNSTDKGSIWVTLKRSSMKSKVQRNKMTTNGEPIEYRCLIRAT 60

Query: 136 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK---GLKKKPRK 194
           DGKKTISTSVGA+DH RFQASY+TILKAHMTALKKRERKDKKKAAE +K    +KKKP++
Sbjct: 61  DGKKTISTSVGARDHQRFQASYATILKAHMTALKKRERKDKKKAAEGDKKEGDVKKKPKR 120

[Close]

BLAST of Cp4.1LG20g05310 vs. NCBI nr
Match: gi|802554773|ref|XP_012065075.1| (PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas])

HSP 1 Score: 185.3 bits (469), Expect = 1.0e-43
Identity = 98/109 (89.91%), Postives = 104/109 (95.41%), Query Frame = 1


Query: 76  MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 135
           MVLLQ DPFLNELTS+FE+STEKG+VWVTLKRSSLKSKVQRNKMTTAG PI+YRCLIRAT
Sbjct: 1   MVLLQPDPFLNELTSMFEQSTEKGTVWVTLKRSSLKSKVQRNKMTTAGTPIDYRCLIRAT 60

Query: 136 DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK 185
           +GKKTISTSVGAKDH RFQASY+TILKAHMTALKKRERKDKKKAA A K
Sbjct: 61  NGKKTISTSVGAKDHQRFQASYATILKAHMTALKKRERKDKKKAAGANK 109

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g05310 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRP14_ARATH	3.5e-44	84.40	Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana GN=SRP14 PE=2...	[more]
SRP14_ORYSJ	1.2e-36	68.38	Signal recognition particle 14 kDa protein OS=Oryza sativa subsp. japonica GN=SR...	[more]
SRP14_HUMAN	2.2e-17	47.22	Signal recognition particle 14 kDa protein OS=Homo sapiens GN=SRP14 PE=1 SV=2	[more]
SRP14_MACFA	2.2e-17	47.22	Signal recognition particle 14 kDa protein OS=Macaca fascicularis GN=SRP14 PE=2 ...	[more]
SRP14_PONAB	2.2e-17	47.22	Signal recognition particle 14 kDa protein OS=Pongo abelii GN=SRP14 PE=2 SV=1	[more]

BLAST of Cp4.1LG20g05310 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYE0_CUCSA	1.0e-53	99.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G534730 PE=4 SV=1	[more]
I3SA11_LOTJA	2.2e-45	87.39	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A9PBY0_POPTR	5.0e-45	82.64	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
B9N603_POPTR	6.5e-45	82.64	Signal recognition particle 14 kDa family protein OS=Populus trichocarpa GN=POPT...	[more]
C6T2Q3_SOYBN	1.2e-43	84.87	Uncharacterized protein OS=Glycine max PE=2 SV=1	[more]

BLAST of Cp4.1LG20g05310 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43640.1	2.0e-45	84.40	Signal recognition particle, SRP9/SRP14 subunit	[more]

BLAST of Cp4.1LG20g05310 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454975\|ref\|XP_004145229.1\|	1.4e-53	99.15	PREDICTED: signal recognition particle 14 kDa protein [Cucumis sativus]	[more]
gi\|388498074\|gb\|AFK37103.1\|	3.2e-45	87.39	unknown [Lotus japonicus]	[more]
gi\|743884944\|ref\|XP_011037413.1\|	7.1e-45	82.64	PREDICTED: signal recognition particle 14 kDa protein [Populus euphratica]	[more]
gi\|566201009\|ref\|XP_006376420.1\|	9.3e-45	82.64	signal recognition particle 14 kDa family protein [Populus trichocarpa]	[more]
gi\|802554773\|ref\|XP_012065075.1\|	1.0e-43	89.91	PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0048500	signal recognition particle
GO:0005786	signal recognition particle, endoplasmic reticulum targeting

Vocabulary: **Molecular Function**
Term	Definition
GO:0030942	endoplasmic reticulum signal peptide binding
GO:0008312	7S RNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006614	SRP-dependent cotranslational protein targeting to membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR009018	Signal_recog_particle_SRP9/14
IPR003210	Signal_recog_particle_SRP14

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
cellular_component	GO:0005786	signal recognition particle, endoplasmic reticulum targeting
cellular_component	GO:0048500	signal recognition particle
molecular_function	GO:0008312	7S RNA binding
molecular_function	GO:0030942	endoplasmic reticulum signal peptide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g05310.1	Cp4.1LG20g05310.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003210	Signal recognition particle, SRP14 subunit	PRODOM	PD009170		coord: 76..145 score: 2.0
IPR003210	Signal recognition particle, SRP14 subunit	PANTHER	PTHR12013	SIGNAL RECOGNITION PARTICLE 14 KD PROTEIN	coord: 54..184 score: 2.7
IPR003210	Signal recognition particle, SRP14 subunit	PFAM	PF02290	SRP14	coord: 79..168 score: 1.6
IPR009018	Signal recognition particle, SRP9/SRP14 subunit	GENE3D	G3DSA:3.30.720.10		coord: 76..189 score: 1.6
IPR009018	Signal recognition particle, SRP9/SRP14 subunit	unknown	SSF54762	Signal recognition particle alu RNA binding heterodimer, SRP9/14	coord: 76..171 score: 3.92

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG20g05310	Cucsa.152070	Cucumber (Gy14) v1	cgycpeB0406
Cp4.1LG20g05310	CmaCh13G005190	Cucurbita maxima (Rimu)	cmacpeB234
Cp4.1LG20g05310	CmaCh18G004840	Cucurbita maxima (Rimu)	cmacpeB438
Cp4.1LG20g05310	CmoCh18G004600	Cucurbita moschata (Rifu)	cmocpeB403
Cp4.1LG20g05310	CmoCh13G005490	Cucurbita moschata (Rifu)	cmocpeB201
Cp4.1LG20g05310	Cla019561	Watermelon (97103) v1	cpewmB508
Cp4.1LG20g05310	Csa1G534730	Cucumber (Chinese Long) v2	cpecuB508
Cp4.1LG20g05310	MELO3C002757	Melon (DHL92) v3.5.1	cpemeB477
Cp4.1LG20g05310	ClCG03G006590	Watermelon (Charleston Gray)	cpewcgB468
Cp4.1LG20g05310	CSPI01G24480	Wild cucumber (PI 183967)	cpecpiB508
Cp4.1LG20g05310	Lsi02G009110	Bottle gourd (USVL1VR-Ls)	cpelsiB417
Cp4.1LG20g05310	MELO3C002757.2	Melon (DHL92) v3.6.1	cpemedB559
Cp4.1LG20g05310	CsaV3_1G036760	Cucumber (Chinese Long) v3	cpecucB0626
Cp4.1LG20g05310	Bhi08G001664	Wax gourd	cpewgoB0649
Cp4.1LG20g05310	CsGy1G023940	Cucumber (Gy14) v2	cgybcpeB072
Cp4.1LG20g05310	Carg22554	Silver-seed gourd	carcpeB0594
Cp4.1LG20g05310	Carg25447	Silver-seed gourd	carcpeB0294

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG20g05310	Cp4.1LG09g07540	Cucurbita pepo (Zucchini)	cpecpeB048

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG20g05310	Cucurbita pepo (Zucchini)	cpecpeB088
Cp4.1LG20g05310	Cucurbita pepo (Zucchini)	cpecpeB412
Cp4.1LG20g05310	Cucumber (Gy14) v1	cgycpeB0040
Cp4.1LG20g05310	Cucurbita maxima (Rimu)	cmacpeB675
Cp4.1LG20g05310	Cucurbita maxima (Rimu)	cmacpeB881
Cp4.1LG20g05310	Cucurbita moschata (Rifu)	cmocpeB628
Cp4.1LG20g05310	Cucurbita moschata (Rifu)	cmocpeB818
Cp4.1LG20g05310	Wild cucumber (PI 183967)	cpecpiB527
Cp4.1LG20g05310	Cucumber (Chinese Long) v2	cpecuB525
Cp4.1LG20g05310	Bottle gourd (USVL1VR-Ls)	cpelsiB416
Cp4.1LG20g05310	Watermelon (Charleston Gray)	cpewcgB450
Cp4.1LG20g05310	Watermelon (97103) v1	cpewmB513
Cp4.1LG20g05310	Melon (DHL92) v3.5.1	cpemeB485
Cp4.1LG20g05310	Cucumber (Gy14) v2	cgybcpeB813
Cp4.1LG20g05310	Melon (DHL92) v3.6.1	cpemedB572
Cp4.1LG20g05310	Silver-seed gourd	carcpeB0416
Cp4.1LG20g05310	Silver-seed gourd	carcpeB1030
Cp4.1LG20g05310	Cucumber (Chinese Long) v3	cpecucB0650
Cp4.1LG20g05310	Wax gourd	cpewgoB0630