Csa1G534730 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G534730
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Signal recognition particle 14 kDa protein; contains IPR003210 (Signal recognition particle, SRP14 subunit), IPR009018 (Signal recognition particle, SRP9/SRP14 subunit)
Location	Chr1 : 19133142 .. 19137335 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATTTCCTGTTCTCTTCGTCTTACTCATGTCTTGATTGAATTCTTACGTATTTTCACGATACGCTCTCCTAATCTGCATTTTAATTATTCATCTTCATGTCAGAATTTAACCTAATCAACTGAGAGTTTTTGTGTCGGTGTTAGTTTTGATGATTCTTAGACAGCCAACTTGTTTTTACTTCCGTTTGGATATGTATTTACATGCCTTTTTTAGGATTTTGCTTGTTGATTATTGCAATTATGGGTCTATCTTTTAGTGTTCTGCATATGCATCAAATCCAAATTGCATGTTCTGCATTGCACCTTTTCTTCAGTTCCACCGCCACTTTTCGGTTGGGTGACGTCTACTTTTCAATGGGTTCTTTCTATTTTAGCGGATACAATCGAGCCTAGCAGTGTTTCTGATCTTAATTATAATATAATGTCTGATTGGTTACGTTATTGGGTCTTCATTGGCTGATAGTCTCGGTGTGAATTCAGTTCTGTTTAACGAAATTCAGTTCTCTCATTCAATTTTGACAAAAGGAATTTCTCGAATTTGCCAAGACCAGATTCTTCAATGGGAGTTAGGTTTGTAACAAACTTTCTTTCAATGTATTTAATCCTTAAGGGTGGAGAATAATAAAATAATATGTATCTAACGGCAGATGGTATTGGGTAAACTAAGATAGAAGGTTCAAGTGCTATGTCACATCATTTGGCCCCTTGAGCATTGCACTCGCCCTTGGGTTTATTTGGCCAATTCGTATTCTTATGTGGCGTGGTACTTTGATAAGTCTTCGAGTAGCTAAACTATATAAATGTCTAAATTGTTTGGTATTCAAATTGTATCCTATTGTTTGTTATAAGTTCCAATTGGGCTAGATGTACCACCCTGTAGTTCTCTGGGAATTGCTTGGTTCACCTGTGCTTGTTTGGAGTTCTGCATATTTTGCATTAGGCATAAAAAGTTTTTTCTTTTGACACTTCCTCATGCCCCTATTAATTTTCTCTGCCAATGGTCCAAGAGAAAGAATTTAGGATCTCTCTCACTAGAGGCTTTATATGTAGACTTAACTTTCCTGTTGTTGAATTTGAATCTGTATTGAGCTAAAGTCCTGGTGTTGGGGTGTTTCTTATTCCCATTGTAATGGCCTAATAGGTTCCCTTTTATTTAATACAAAGTAATAAAAGGAAACTCAAGAACACTTCAATAGAACCCTAACCCTCTGCCCTTCCTTTCTTTCACTATTTATAACCATCTACCTGTCTATATAACTATCTACCCTTAGCCCTATCTAAATCTAGGTATCTAACAGTTCCCCAATGTTTTCTTTGTAACTTTGTTTGATAAAATTATCTTTCATTGAATTGAAAAGCTATTGGGTTTGTTGATCACTAACCATACAAATTATTTCTTCAAACGGGAAGTGATCCCACTGTTTGTATACGCTCACCAAGGCATACAGTCATTGTCTTTTTGCTGCTACGTACTCCAACATTTTCTAGGCTTACTTAGCTTCTCTGCTCTCATTAGGCAAACCAAATTTAAAAGGTTTCCATTTCAGGGTTCCAAAACCTTGCTGCTGCATTTGACTTAAATGAAACCTGCCACTAGAGCTAACTTATTGCACATTTGGAAGGAAAGAAACAACAGAATTTTCAATGACAAGTATAGACCTTTTGTAAATTTTCTGATCTTACTGAGTAAAAAATGTGACACAAGTAAAGTGCCTTACAAATAGTACGTAGATGCACACAGATTTTTATAATTAGTCCACTTTTACGGTATAGTGTTATTTCTTTACAAGGAGACGTCACAAAGGCATCTCTGTGTCTCTAAACAAGTGGTGCCTGATAGTATTTCTTATGTTAATTCACCCATGTTATAGCTTGCTGTAGCATTATTGTCCTTTAACTGGTTAAGGTATTATAACCTTGACAAGAAATCAGAGGTTTGGATTCCCACTCCCACATATTCTTTACTCAAAAGAAGAAGACAAAAAGGAAAGAAAGGAAAACTAAACTATAGGGCAGAAAAGATCAACAACAATAAATTGAAATTACAGAACCATGACAATGCAACCTCCGAAAAAGATCATAAACAGAAAACGCTCAAATGAAGAACAGATTATGTATTTTCACTCCTTTTAATTCAAAATTAAGTAAATAACGGTGCTAAATTAATCACATTTCATAGGATTATTAGAGACTGTCTCTTACTTCCTGGCTAGATATTTTATGATTGATTTTTCTTTGATGAAAGTATCTGTTTTTTGTCAACTGCGGTAAAAGATGTCAGATTTTCAGTGTTACAATGTGAGTTTTGGCCCAAGATAGACTATTGGAATTGTGTATAGTTGCCTAAAATTCACTACATTGTGGAATGTTATTGCAACGTCCTGTTTCTACTTGGATGTAATGTGTGCAGACGACGATTGTGGTGCTTCCATGTCACTTTGAGGATTAGTGGAAGATTTCAAATTTATTGAAGATGTATGCATGTATACTATTTGAATCTGAAAAAAAAAAAAGCCTTTAGGATTTGCAGCATGTTGCTTAAAATGACTAGCACACCATCACTAATTAAATGGAAAAGTGACAACTACATATTATCTGCTAAAGAGCAATAGAAAAAACAGTAAGCATGGTTGCTATATCAAGTTTAGTCATTGTCTTGATGATGTTTGGACCAAAGTTGAATTGTCTTTACTTATGGAATTTATTTGTCTGAATAGCAAGATGTGCATAATAGCATTATTTGTTTCACTGATATTTGAACCATAATGAAAATCGCTTGAATTGTGGACTTTTTCCATCCAAATTCTGAGATGTAGGCATCATTAGCATTCTATGTTTCATTCAACAACAAAATATTGTGGCTTGATTATGACCTCGTTAAGTTCTTATTCTTTTGGTTTAGGTTCTACTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCATGTTTGAGCGTAGTACCGAGAAGGGTTCAGTGTGGGTTACTCTAAAGCGATGTATGTGCATATCAGTGTATTTTTAAAATTAATTTCATATATTTTTGTGGTAATTTTTAGGAGTCTGATTAGGTTCAAACTCTATTGTCTCTGATTGATGTAGCATCATTGAAGTCCAAGGTGCAGAGAAATAAAATGACCACTGCTGGTCAACCTATTGAGTATAGGTGCCTCATCCGTGCTACAGATGGGAAGAAGACAATTTCAACTTCCGTAAGTATTGACTCATCTTTTAAGCTTGTTTCCCCTTCCCTTTTCTATCTTTTCTGAATTGAAAACTTCGCATAAGAATTCAAGTTTTTGTAGTAAACTCTAAATTTACTCGGGCTGAAGCAAGTCTCACTGAATTGAAGAGTGCTGTGTTTATACATCGTTTCTTTTTACTCTATTTATGTTCTACTTTAATTTTGTATTACAACTCAATGCAACACAGGAGTGATGGTGAAGTAATATATGGATTCTACCCCCTTTTCATCGTCACTCACTGCTTTATGAATTAGTTTTTTCTTCTGCTTGAGCTTTGAATTATCTTTTACTCAGTTCATTGTTTTTAGCAAACAGAAGAACCAAACCCCTTTTGTAGGACTTCAATCAGCATATATCCCTTTCACATTCTTCAGATCTTATTATCTGTTTTAACTTTCTTGAATCTGAAACATTTGTAACAACTTCTGCTGAACTGGCTAGGTTGGTGCAAAAGATCATCTGAGATTTCAAGCTTCGTATTCAACCATTCTTAAAGCCCACATGACTGCTCTTAAAAAGAGAGAGAGAAAGGACAAGAAGAAGGCAGCAGAGGCCGAGAAGGGTCTGAAGAAAAAACCCAGGAAAGTATAAAAGCAGGGCTCTTTTTTGCTTCTGTAGGTGGCTCAAATCATTGTAACTTCTTTCTCTTCGTTACCCTTGTTTTTCATTCCTTTAACTTGATGAGTGTTATGCTTCCCCCATATTTCTAGCAAAACGCAGAGGAAAGGGGAGGTAGGATTTTGGAGCTTCAGGAACTGAAAAATATTCGATCTTGTCATTTGTTTAGCCTTTTTTTCCCTTAAAAAGATTTAAATTATACATGTGATTTTACTGTGGAATTGTCTGTAAGTTTTACATTCTCTCTTCCTTGAAGCTATAAAACAACTTGACCGTCCTTTTAAGGTGCAATCACAAAGTTGATATTGTTTGTGATACACGAGCCAGGC

mRNA sequence

ATGGTTCTACTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCATGTTTGAGCGTAGTACCGAGAAGGGTTCAGTGTGGGTTACTCTAAAGCGATCATCATTGAAGTCCAAGGTGCAGAGAAATAAAATGACCACTGCTGGTCAACCTATTGAGTATAGGTGCCTCATCCGTGCTACAGATGGGAAGAAGACAATTTCAACTTCCGTTGGTGCAAAAGATCATCTGAGATTTCAAGCTTCGTATTCAACCATTCTTAAAGCCCACATGACTGCTCTTAAAAAGAGAGAGAGAAAGGACAAGAAGAAGGCAGCAGAGGCCGAGAAGGGTCTGAAGAAAAAACCCAGGAAAGTATAA

Coding sequence (CDS)

ATGGTTCTACTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCATGTTTGAGCGTAGTACCGAGAAGGGTTCAGTGTGGGTTACTCTAAAGCGATCATCATTGAAGTCCAAGGTGCAGAGAAATAAAATGACCACTGCTGGTCAACCTATTGAGTATAGGTGCCTCATCCGTGCTACAGATGGGAAGAAGACAATTTCAACTTCCGTTGGTGCAAAAGATCATCTGAGATTTCAAGCTTCGTATTCAACCATTCTTAAAGCCCACATGACTGCTCTTAAAAAGAGAGAGAGAAAGGACAAGAAGAAGGCAGCAGAGGCCGAGAAGGGTCTGAAGAAAAAACCCAGGAAAGTATAA

Protein sequence

MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV*

Homology

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BLAST of Csa1G534730 vs. Swiss-Prot
Match: SRP14_ARATH (Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana GN=SRP14 PE=2 SV=2)

HSP 1 Score: 189.1 bits (479), Expect = 2.8e-47
Identity = 93/109 (85.32%), Postives = 101/109 (92.66%), Query Frame = 1


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTSMFE+S EKGSVWVTLKRSSLKSKVQ+ K+++ G+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK 110
           DGKKT+STSVGAKDH RFQASY+TILKAHMTALKKRERKD+KK+ EAEK
Sbjct: 61  DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEK 109

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BLAST of Csa1G534730 vs. Swiss-Prot
Match: SRP14_ORYSJ (Signal recognition particle 14 kDa protein OS=Oryza sativa subsp. japonica GN=SRP14 PE=2 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 5.0e-41
Identity = 81/117 (69.23%), Postives = 98/117 (83.76%), Query Frame = 1


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MV+LQ DPFL+ELTSM+ERSTEKGSVWVT+KRSS+K + +  KM   G+ +EYRCL+RAT
Sbjct: 1   MVVLQPDPFLSELTSMYERSTEKGSVWVTMKRSSMKCQARLKKMAAKGEAVEYRCLVRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRK 118
           DGKK I T++ AK++L+FQASY+T+LKAHM ALKKRERKDKKKAAE EK  +K P+K
Sbjct: 61  DGKKNICTALSAKEYLKFQASYATVLKAHMHALKKRERKDKKKAAEVEKIPEKAPKK 117

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BLAST of Csa1G534730 vs. Swiss-Prot
Match: SRP14_HUMAN (Signal recognition particle 14 kDa protein OS=Homo sapiens GN=SRP14 PE=1 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-19
Identity = 50/108 (46.30%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAG-QPIEYRCLIRA 60
           MVLL+ + FL ELT +F++    GSV++TLK+   ++K    K T  G +P + +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60

Query: 61  TDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEA 108
           TDGKK IST V +K+  +FQ +YS +L+A+M  LKKR++K+K K  +A
Sbjct: 61  TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKA 108

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BLAST of Csa1G534730 vs. Swiss-Prot
Match: SRP14_MACFA (Signal recognition particle 14 kDa protein OS=Macaca fascicularis GN=SRP14 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-19
Identity = 50/108 (46.30%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAG-QPIEYRCLIRA 60
           MVLL+ + FL ELT +F++    GSV++TLK+   ++K    K T  G +P + +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60

Query: 61  TDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEA 108
           TDGKK IST V +K+  +FQ +YS +L+A+M  LKKR++K+K K  +A
Sbjct: 61  TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKA 108

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BLAST of Csa1G534730 vs. Swiss-Prot
Match: SRP14_PONAB (Signal recognition particle 14 kDa protein OS=Pongo abelii GN=SRP14 PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-19
Identity = 50/108 (46.30%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAG-QPIEYRCLIRA 60
           MVLL+ + FL ELT +F++    GSV++TLK+   ++K    K T  G +P + +CL+RA
Sbjct: 1   MVLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRA 60

Query: 61  TDGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEA 108
           TDGKK IST V +K+  +FQ +YS +L+A+M  LKKR++K+K K  +A
Sbjct: 61  TDGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKA 108

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BLAST of Csa1G534730 vs. TrEMBL
Match: A0A0A0LYE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G534730 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.4e-58
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 119
           DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV
Sbjct: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118

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BLAST of Csa1G534730 vs. TrEMBL
Match: I3SA11_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.5e-49
Identity = 103/119 (86.55%), Postives = 111/119 (93.28%), Query Frame = 1


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTS+FERSTEKGSVWVTLKRSSLKSKVQRNK+ TAG+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKLATAGEAIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK--GLKKKPRK 118
           DGKKTISTSVG KDH RFQASY+TILKAHMTALKKRERKDKKK+AEA+K  G  K+P+K
Sbjct: 61  DGKKTISTSVGPKDHQRFQASYATILKAHMTALKKRERKDKKKSAEADKREGSSKRPKK 119

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BLAST of Csa1G534730 vs. TrEMBL
Match: A9PBY0_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.0e-48
Identity = 99/121 (81.82%), Postives = 114/121 (94.21%), Query Frame = 1


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELT++++ ST+KGS+WVTLKRSS+KSKVQRNKMTT G+PIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTTLYQNSTDKGSIWVTLKRSSMKSKVQRNKMTTNGEPIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK---GLKKKPRK 119
           DGKKTISTSVGA+DH RFQASY+TILKAHMTALKKRERKDKKKAAE++K    +KKKP++
Sbjct: 61  DGKKTISTSVGARDHQRFQASYATILKAHMTALKKRERKDKKKAAESDKKEGDVKKKPKR 120

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BLAST of Csa1G534730 vs. TrEMBL
Match: B9N603_POPTR (Signal recognition particle 14 kDa family protein OS=Populus trichocarpa GN=POPTR_0013s12890g PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.3e-48
Identity = 99/121 (81.82%), Postives = 113/121 (93.39%), Query Frame = 1


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELT++++ ST+KGS+WVTLKRSS+KSKVQRNKMTT G+PIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTTLYQNSTDKGSIWVTLKRSSMKSKVQRNKMTTNGEPIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK---GLKKKPRK 119
           DGKKTISTSVGA+DH RFQASY+TILKAHMTALKKRERKDKKKAAE +K    +KKKP++
Sbjct: 61  DGKKTISTSVGARDHQRFQASYATILKAHMTALKKRERKDKKKAAEGDKKEGDVKKKPKR 120

[Close]

BLAST of Csa1G534730 vs. TrEMBL
Match: C6T2Q3_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 5.1e-48
Identity = 102/119 (85.71%), Postives = 109/119 (91.60%), Query Frame = 1


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTSMFERST+ GSVWVTLKRSSLKSKVQRNK+ TAG+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTKLGSVWVTLKRSSLKSKVQRNKLATAGEAIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK--GLKKKPRK 118
           DGKKTISTSVG KDH RFQASY+TILKAHMTALKKRERKDKKK AEA+K  G  K+P+K
Sbjct: 61  DGKKTISTSVGPKDHQRFQASYATILKAHMTALKKRERKDKKKPAEADKREGSSKRPKK 119

[Close]

BLAST of Csa1G534730 vs. TAIR10
Match: AT2G43640.1 (AT2G43640.1 Signal recognition particle, SRP9/SRP14 subunit)

HSP 1 Score: 189.1 bits (479), Expect = 1.6e-48
Identity = 93/109 (85.32%), Postives = 101/109 (92.66%), Query Frame = 1


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTSMFE+S EKGSVWVTLKRSSLKSKVQ+ K+++ G+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK 110
           DGKKT+STSVGAKDH RFQASY+TILKAHMTALKKRERKD+KK+ EAEK
Sbjct: 61  DGKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEK 109

[Close]

BLAST of Csa1G534730 vs. NCBI nr
Match: gi|449454975|ref|XP_004145229.1| (PREDICTED: signal recognition particle 14 kDa protein [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 7.7e-58
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 119
           DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV
Sbjct: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118

[Close]

BLAST of Csa1G534730 vs. NCBI nr
Match: gi|388498074|gb|AFK37103.1| (unknown [Lotus japonicus])

HSP 1 Score: 202.2 bits (513), Expect = 5.0e-49
Identity = 103/119 (86.55%), Postives = 111/119 (93.28%), Query Frame = 1


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTS+FERSTEKGSVWVTLKRSSLKSKVQRNK+ TAG+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSLFERSTEKGSVWVTLKRSSLKSKVQRNKLATAGEAIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK--GLKKKPRK 118
           DGKKTISTSVG KDH RFQASY+TILKAHMTALKKRERKDKKK+AEA+K  G  K+P+K
Sbjct: 61  DGKKTISTSVGPKDHQRFQASYATILKAHMTALKKRERKDKKKSAEADKREGSSKRPKK 119

[Close]

BLAST of Csa1G534730 vs. NCBI nr
Match: gi|743884944|ref|XP_011037413.1| (PREDICTED: signal recognition particle 14 kDa protein [Populus euphratica])

HSP 1 Score: 200.7 bits (509), Expect = 1.5e-48
Identity = 99/121 (81.82%), Postives = 114/121 (94.21%), Query Frame = 1


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELT++++ ST+KGS+WVTLKRSS+KSKVQRNKMTT G+PIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTTLYQNSTDKGSIWVTLKRSSMKSKVQRNKMTTNGEPIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK---GLKKKPRK 119
           DGKKTISTSVGA+DH RFQASY+TILKAHMTALKKRERKDKKKAAE++K    +KKKP++
Sbjct: 61  DGKKTISTSVGARDHQRFQASYATILKAHMTALKKRERKDKKKAAESDKKEGDVKKKPKR 120

[Close]

BLAST of Csa1G534730 vs. NCBI nr
Match: gi|566201009|ref|XP_006376420.1| (signal recognition particle 14 kDa family protein [Populus trichocarpa])

HSP 1 Score: 200.3 bits (508), Expect = 1.9e-48
Identity = 99/121 (81.82%), Postives = 113/121 (93.39%), Query Frame = 1


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELT++++ ST+KGS+WVTLKRSS+KSKVQRNKMTT G+PIEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTTLYQNSTDKGSIWVTLKRSSMKSKVQRNKMTTNGEPIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK---GLKKKPRK 119
           DGKKTISTSVGA+DH RFQASY+TILKAHMTALKKRERKDKKKAAE +K    +KKKP++
Sbjct: 61  DGKKTISTSVGARDHQRFQASYATILKAHMTALKKRERKDKKKAAEGDKKEGDVKKKPKR 120

[Close]

BLAST of Csa1G534730 vs. NCBI nr
Match: gi|351726180|ref|NP_001235838.1| (uncharacterized protein LOC100526909 [Glycine max])

HSP 1 Score: 198.4 bits (503), Expect = 7.2e-48
Identity = 102/119 (85.71%), Postives = 109/119 (91.60%), Query Frame = 1


Query: 1   MVLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRAT 60
           MVLLQLDPFLNELTSMFERST+ GSVWVTLKRSSLKSKVQRNK+ TAG+ IEYRCLIRAT
Sbjct: 1   MVLLQLDPFLNELTSMFERSTKLGSVWVTLKRSSLKSKVQRNKLATAGEAIEYRCLIRAT 60

Query: 61  DGKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEK--GLKKKPRK 118
           DGKKTISTSVG KDH RFQASY+TILKAHMTALKKRERKDKKK AEA+K  G  K+P+K
Sbjct: 61  DGKKTISTSVGPKDHQRFQASYATILKAHMTALKKRERKDKKKPAEADKREGSSKRPKK 119

The following BLAST results are available for this feature:

BLAST of Csa1G534730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRP14_ARATH	2.8e-47	85.32	Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana GN=SRP14 PE=2...	[more]
SRP14_ORYSJ	5.0e-41	69.23	Signal recognition particle 14 kDa protein OS=Oryza sativa subsp. japonica GN=SR...	[more]
SRP14_HUMAN	1.4e-19	46.30	Signal recognition particle 14 kDa protein OS=Homo sapiens GN=SRP14 PE=1 SV=2	[more]
SRP14_MACFA	1.4e-19	46.30	Signal recognition particle 14 kDa protein OS=Macaca fascicularis GN=SRP14 PE=2 ...	[more]
SRP14_PONAB	1.4e-19	46.30	Signal recognition particle 14 kDa protein OS=Pongo abelii GN=SRP14 PE=2 SV=1	[more]

BLAST of Csa1G534730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYE0_CUCSA	5.4e-58	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G534730 PE=4 SV=1	[more]
I3SA11_LOTJA	3.5e-49	86.55	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A9PBY0_POPTR	1.0e-48	81.82	Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1	[more]
B9N603_POPTR	1.3e-48	81.82	Signal recognition particle 14 kDa family protein OS=Populus trichocarpa GN=POPT...	[more]
C6T2Q3_SOYBN	5.1e-48	85.71	Uncharacterized protein OS=Glycine max PE=2 SV=1	[more]

BLAST of Csa1G534730 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G43640.1	1.6e-48	85.32	Signal recognition particle, SRP9/SRP14 subunit	[more]

BLAST of Csa1G534730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449454975\|ref\|XP_004145229.1\|	7.7e-58	100.00	PREDICTED: signal recognition particle 14 kDa protein [Cucumis sativus]	[more]
gi\|388498074\|gb\|AFK37103.1\|	5.0e-49	86.55	unknown [Lotus japonicus]	[more]
gi\|743884944\|ref\|XP_011037413.1\|	1.5e-48	81.82	PREDICTED: signal recognition particle 14 kDa protein [Populus euphratica]	[more]
gi\|566201009\|ref\|XP_006376420.1\|	1.9e-48	81.82	signal recognition particle 14 kDa family protein [Populus trichocarpa]	[more]
gi\|351726180\|ref\|NP_001235838.1\|	7.2e-48	85.71	uncharacterized protein LOC100526909 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003210	Signal_recog_particle_SRP14
IPR009018	Signal_recog_particle_SRP9/14

Vocabulary: **Cellular Component**
Term	Definition
GO:0005786	signal recognition particle, endoplasmic reticulum targeting
GO:0048500	signal recognition particle

Vocabulary: **Biological Process**
Term	Definition
GO:0006614	SRP-dependent cotranslational protein targeting to membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0008312	7S RNA binding
GO:0030942	endoplasmic reticulum signal peptide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
cellular_component	GO:0005786	signal recognition particle, endoplasmic reticulum targeting
cellular_component	GO:0048500	signal recognition particle
molecular_function	GO:0008312	7S RNA binding
molecular_function	GO:0030942	endoplasmic reticulum signal peptide binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU097886	cucumber EST collection version 3.0	transcribed_cluster
CU136159	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G534730.1	Csa1G534730.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU097886	CU097886	transcribed_cluster
CU136159	CU136159	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003210	Signal recognition particle, SRP14 subunit	PRODOM	PD009170		coord: 1..70 score: 2.0
IPR003210	Signal recognition particle, SRP14 subunit	PANTHER	PTHR12013	SIGNAL RECOGNITION PARTICLE 14 KD PROTEIN	coord: 1..109 score: 3.8
IPR003210	Signal recognition particle, SRP14 subunit	PFAM	PF02290	SRP14	coord: 4..93 score: 7.5
IPR009018	Signal recognition particle, SRP9/SRP14 subunit	GENE3D	G3DSA:3.30.720.10		coord: 1..114 score: 5.7
IPR009018	Signal recognition particle, SRP9/SRP14 subunit	unknown	SSF54762	Signal recognition particle alu RNA binding heterodimer, SRP9/14	coord: 1..96 score: 1.05

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G534730	Cla019561	Watermelon (97103) v1	cuwmB025
Csa1G534730	MELO3C002757	Melon (DHL92) v3.5.1	cumeB032
Csa1G534730	ClCG03G006590	Watermelon (Charleston Gray)	cuwcgB049
Csa1G534730	Lsi02G009110	Bottle gourd (USVL1VR-Ls)	culsiB023
Csa1G534730	MELO3C002757.2	Melon (DHL92) v3.6.1	cumedB025
Csa1G534730	Cla97C03G057880	Watermelon (97103) v2	cuwmbB045
Csa1G534730	Bhi08G001664	Wax gourd	cuwgoB055
Csa1G534730	CSPI01G24480	Wild cucumber (PI 183967)	cpicuB001
Csa1G534730	Cucsa.152070	Cucumber (Gy14) v1	cgycuB219
Csa1G534730	CmaCh18G004840	Cucurbita maxima (Rimu)	cmacuB392
Csa1G534730	CmaCh13G005190	Cucurbita maxima (Rimu)	cmacuB220
Csa1G534730	CmoCh13G005490	Cucurbita moschata (Rifu)	cmocuB205
Csa1G534730	CmoCh18G004600	Cucurbita moschata (Rifu)	cmocuB381
Csa1G534730	Cp4.1LG20g05310	Cucurbita pepo (Zucchini)	cpecuB508
Csa1G534730	Cp4.1LG09g07540	Cucurbita pepo (Zucchini)	cpecuB030
Csa1G534730	CsGy1G023940	Cucumber (Gy14) v2	cgybcuB002
Csa1G534730	Carg25447	Silver-seed gourd	carcuB0231
Csa1G534730	Carg22554	Silver-seed gourd	carcuB0453

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None