Cp4.1LG20g04050 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG20g04050
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionWound-responsive family protein
LocationCp4.1LG20 : 2299471 .. 2299707 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCGTAGATTTTACAAGGGCGAGATCAGCGGAATGAAAGATCCGACGGCGAAGCGTGAGCCGATATTGAAGGCGGTGAGAGATCATTCGGGATCATCTTCGAATCAGGGGGCAAGGGGATTTTACAGTGGTATGGATTCGAGTGCGGTAATGGCTGCGAAGGCGGAGAAACTTAAGCGGGCCGAGGAGTCTCTCAGAACGGTTATGTATTTGAGCTGTTGGGGGCCTAACTAA

mRNA sequence

ATGAGCCGTAGATTTTACAAGGGCGAGATCAGCGGAATGAAAGATCCGACGGCGAAGCGTGAGCCGATATTGAAGGCGGTGAGAGATCATTCGGGATCATCTTCGAATCAGGGGGCAAGGGGATTTTACAGTGGTATGGATTCGAGTGCGGTAATGGCTGCGAAGGCGGAGAAACTTAAGCGGGCCGAGGAGTCTCTCAGAACGGTTATGTATTTGAGCTGTTGGGGGCCTAACTAA

Coding sequence (CDS)

ATGAGCCGTAGATTTTACAAGGGCGAGATCAGCGGAATGAAAGATCCGACGGCGAAGCGTGAGCCGATATTGAAGGCGGTGAGAGATCATTCGGGATCATCTTCGAATCAGGGGGCAAGGGGATTTTACAGTGGTATGGATTCGAGTGCGGTAATGGCTGCGAAGGCGGAGAAACTTAAGCGGGCCGAGGAGTCTCTCAGAACGGTTATGTATTTGAGCTGTTGGGGGCCTAACTAA

Protein sequence

MSRRFYKGEISGMKDPTAKREPILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLKRAEESLRTVMYLSCWGPN
Homology
[Close]
BLAST of Cp4.1LG20g04050 vs. TrEMBL
Match: B9H210_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s03330g PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-11
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 10 ISGMKDPTAKREP-ILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLKRAEESLRT 69
          + GMKD  +K +   +K++RD + SSS++ AR F   +DSSA M AK EK K+AEESLRT
Sbjct: 18 VQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSAYMNAKNEKFKQAEESLRT 77

Query: 70 VMYLSCWGPN 79
          VM+LSCWGPN
Sbjct: 78 VMFLSCWGPN 87

[Close]
BLAST of Cp4.1LG20g04050 vs. TrEMBL
Match: Q6YCG3_VITVI (Wound induced protein-like (Fragment) OS=Vitis vinifera GN=WIP PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.7e-10
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1 

Query: 12 GMKDPTAKREPILKAVRDHS-GSSSNQGARGFYSGMDSSAVMAAK--AEKLKRAEESLRT 71
          GMKD  +K +P LK++RD    SSS+  AR F   +DS+A  A K   E+LK++EESLRT
Sbjct: 2  GMKDQASKCDPTLKSLRDSGCSSSSSTQARRFSGALDSAAFKAVKNAEERLKQSEESLRT 61

Query: 72 VMYLSCWGPN 79
          VMYLSCWGPN
Sbjct: 62 VMYLSCWGPN 71

[Close]
BLAST of Cp4.1LG20g04050 vs. TrEMBL
Match: A0A022QKW0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018114mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-09
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 1 

Query: 1  MSRRFYKGEI---SGMKDPTAKREPILKAVRD-HSGSSSNQGARGFYSGMDSSAVMAAKA 60
          MSR  Y+  +    G+KDP +KR+  +K ++D ++ SSS++ AR   + ++S+ +   KA
Sbjct: 1  MSRVAYQAGMRVMQGIKDPASKRDTNIKTLKDSYAYSSSSRQARKLSAAIESTGL---KA 60

Query: 61 EKLKRAEESLRTVMYLSCWGPN 79
          +KLK+AEESLRTVMYLSCWGPN
Sbjct: 61 DKLKQAEESLRTVMYLSCWGPN 79

[Close]
BLAST of Cp4.1LG20g04050 vs. TrEMBL
Match: A0A0A0LV05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G071850 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-09
Identity = 42/77 (54.55%), Postives = 48/77 (62.34%), Query Frame = 1 

Query: 13 MKDPTAKREPILKAV-----------RDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLKR 72
          MKDPT K+EP+L+             R HS SSSNQ A           V+ +KAE+LKR
Sbjct: 1  MKDPTLKQEPMLEGPLRDHHHHHHRRRHHSESSSNQTA---------VPVVLSKAEQLKR 60

Query: 73 AEESLRTVMYLSCWGPN 79
          AEESLRTVMYLSCWGPN
Sbjct: 61 AEESLRTVMYLSCWGPN 68

[Close]
BLAST of Cp4.1LG20g04050 vs. TrEMBL
Match: V4UE40_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017323mg PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.7e-09
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 1 

Query: 13 MKDPTAKREPILKAVRDHSG--SSSNQGARGFYSGMDSSAVMAAKAEKLKRAEESLRTVM 72
          ++D  +K +   K+++D +   SSS++ AR F +  DS+A  +A++EKL++AEESLRTVM
Sbjct: 21 VRDQASKGDSAFKSLKDSASACSSSSKQARCFSAAADSTAFKSARSEKLRQAEESLRTVM 80

Query: 73 YLSCWGPN 79
          YLSCWGPN
Sbjct: 81 YLSCWGPN 88

[Close]
BLAST of Cp4.1LG20g04050 vs. TAIR10
Match: AT4G10270.1 (AT4G10270.1 Wound-responsive family protein)

HSP 1 Score: 56.6 bits (135), Expect = 7.9e-09
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1 

Query: 8  GEISGMKDPTA--KREPILKAVRDHSGS---SSNQGARGFYSGMDSSAVMAAKAEKLKRA 67
          G +  +KD     +   IL++V  H  +   S +QG R   S + ++   + ++EK K+A
Sbjct: 15 GAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAAVTSSGESEKAKKA 74

Query: 68 EESLRTVMYLSCWGPN 79
          EESLRTVMYLSCWGPN
Sbjct: 75 EESLRTVMYLSCWGPN 90

[Close]
BLAST of Cp4.1LG20g04050 vs. TAIR10
Match: AT4G05070.1 (AT4G05070.1 Wound-responsive family protein)

HSP 1 Score: 51.6 bits (122), Expect = 2.5e-07
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1 

Query: 17 TAKREPILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLKRAEESLRTVMYLSCWG 76
          T  R  + ++V     +SS+   R     ++SS   AA +E+L++AEESLRTVM+LSCWG
Sbjct: 26 TTLRSAVKESVSSPQSASSSSSVRRLKGDLESSRFGAAASERLRQAEESLRTVMFLSCWG 85

[Close]
BLAST of Cp4.1LG20g04050 vs. NCBI nr
Match: gi|224076777|ref|XP_002304995.1| (hypothetical protein POPTR_0004s03330g [Populus trichocarpa])

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1 

Query: 10 ISGMKDPTAKREP-ILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLKRAEESLRT 69
          + GMKD  +K +   +K++RD + SSS++ AR F   +DSSA M AK EK K+AEESLRT
Sbjct: 18 VQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSAYMNAKNEKFKQAEESLRT 77

Query: 70 VMYLSCWGPN 79
          VM+LSCWGPN
Sbjct: 78 VMFLSCWGPN 87

[Close]
BLAST of Cp4.1LG20g04050 vs. NCBI nr
Match: gi|37724583|gb|AAO12870.1| (wound induced protein-like, partial [Vitis vinifera])

HSP 1 Score: 72.4 bits (176), Expect = 3.9e-10
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1 

Query: 12 GMKDPTAKREPILKAVRDHS-GSSSNQGARGFYSGMDSSAVMAAK--AEKLKRAEESLRT 71
          GMKD  +K +P LK++RD    SSS+  AR F   +DS+A  A K   E+LK++EESLRT
Sbjct: 2  GMKDQASKCDPTLKSLRDSGCSSSSSTQARRFSGALDSAAFKAVKNAEERLKQSEESLRT 61

Query: 72 VMYLSCWGPN 79
          VMYLSCWGPN
Sbjct: 62 VMYLSCWGPN 71

[Close]
BLAST of Cp4.1LG20g04050 vs. NCBI nr
Match: gi|359495702|ref|XP_003635065.1| (PREDICTED: uncharacterized protein LOC100233117 [Vitis vinifera])

HSP 1 Score: 72.4 bits (176), Expect = 3.9e-10
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1 

Query: 12 GMKDPTAKREPILKAVRDHS-GSSSNQGARGFYSGMDSSAVMAAK--AEKLKRAEESLRT 71
          GMKD  +K +P LK++RD    SSS+  AR F   +DS+A  A K   E+LK++EESLRT
Sbjct: 20 GMKDQASKCDPTLKSLRDSGCSSSSSTQARRFSGALDSAAFKAVKNAEERLKQSEESLRT 79

Query: 72 VMYLSCWGPN 79
          VMYLSCWGPN
Sbjct: 80 VMYLSCWGPN 89

[Close]
BLAST of Cp4.1LG20g04050 vs. NCBI nr
Match: gi|604315182|gb|EYU27888.1| (hypothetical protein MIMGU_mgv1a018114mg [Erythranthe guttata])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 1 

Query: 1  MSRRFYKGEI---SGMKDPTAKREPILKAVRD-HSGSSSNQGARGFYSGMDSSAVMAAKA 60
          MSR  Y+  +    G+KDP +KR+  +K ++D ++ SSS++ AR   + ++S+ +   KA
Sbjct: 1  MSRVAYQAGMRVMQGIKDPASKRDTNIKTLKDSYAYSSSSRQARKLSAAIESTGL---KA 60

Query: 61 EKLKRAEESLRTVMYLSCWGPN 79
          +KLK+AEESLRTVMYLSCWGPN
Sbjct: 61 DKLKQAEESLRTVMYLSCWGPN 79

[Close]
BLAST of Cp4.1LG20g04050 vs. NCBI nr
Match: gi|659067929|ref|XP_008441945.1| (PREDICTED: transcription factor MafB-like [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 1 

Query: 13 MKDPTAKREPILKAVRDHS------------GSSSNQGARGFYSGMDSSAVMAAKAEKLK 72
          MKDPT K+E +LK +RDH             GSSSNQ      +  +   V ++KAE+ K
Sbjct: 1  MKDPTVKQEAMLKGLRDHHLHHHHHHHHHHPGSSSNQ------TTANPVVVSSSKAEQHK 60

Query: 73 RAEESLRTVMYLSCWGPN 79
          RAEESLRTVMYLSCWGPN
Sbjct: 61 RAEESLRTVMYLSCWGPN 72

The following BLAST results are available for this feature:
BLAST of Cp4.1LG20g04050 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG20g04050 vs. TrEMBL
Match NameE-valueIdentityDescription
B9H210_POPTR1.9e-1157.14Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s03330g PE=4 SV=1[more]
Q6YCG3_VITVI2.7e-1057.14Wound induced protein-like (Fragment) OS=Vitis vinifera GN=WIP PE=2 SV=1[more]
A0A022QKW0_ERYGU1.0e-0948.78Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018114mg PE=4 SV=1[more]
A0A0A0LV05_CUCSA1.8e-0954.55Uncharacterized protein OS=Cucumis sativus GN=Csa_1G071850 PE=4 SV=1[more]
V4UE40_9ROSI6.7e-0950.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017323mg PE=4 SV=1[more]
BLAST of Cp4.1LG20g04050 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G10270.17.9e-0942.11 Wound-responsive family protein[more]
AT4G05070.12.5e-0743.33 Wound-responsive family protein[more]
BLAST of Cp4.1LG20g04050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|224076777|ref|XP_002304995.1|2.7e-1157.14hypothetical protein POPTR_0004s03330g [Populus trichocarpa][more]
gi|37724583|gb|AAO12870.1|3.9e-1057.14wound induced protein-like, partial [Vitis vinifera][more]
gi|359495702|ref|XP_003635065.1|3.9e-1057.14PREDICTED: uncharacterized protein LOC100233117 [Vitis vinifera][more]
gi|604315182|gb|EYU27888.1|1.5e-0948.78hypothetical protein MIMGU_mgv1a018114mg [Erythranthe guttata][more]
gi|659067929|ref|XP_008441945.1|2.0e-0952.56PREDICTED: transcription factor MafB-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022251DUF3774_wound-induced
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG20g04050.1Cp4.1LG20g04050.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 24..77
score: 2.3
NoneNo IPR availablePANTHERPTHR33090FAMILY NOT NAMEDcoord: 10..78
score: 2.1
NoneNo IPR availablePANTHERPTHR33090:SF2SUBFAMILY NOT NAMEDcoord: 10..78
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG20g04050CmaCh13G006820Cucurbita maxima (Rimu)cmacpeB234
Cp4.1LG20g04050CmaCh18G003410Cucurbita maxima (Rimu)cmacpeB438
Cp4.1LG20g04050CmoCh13G007020Cucurbita moschata (Rifu)cmocpeB201
Cp4.1LG20g04050Cla019452Watermelon (97103) v1cpewmB503
Cp4.1LG20g04050Csa1G071850Cucumber (Chinese Long) v2cpecuB506
Cp4.1LG20g04050MELO3C002552Melon (DHL92) v3.5.1cpemeB477
Cp4.1LG20g04050ClCG03G005480Watermelon (Charleston Gray)cpewcgB463
Cp4.1LG20g04050CsaV3_1G011730Cucumber (Chinese Long) v3cpecucB0624
Cp4.1LG20g04050Bhi08G001549Wax gourdcpewgoB0637
Cp4.1LG20g04050Carg14657Silver-seed gourdcarcpeB0215
Cp4.1LG20g04050Carg21467Silver-seed gourdcarcpeB1314
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG20g04050Cp4.1LG09g08770Cucurbita pepo (Zucchini)cpecpeB048
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG20g04050Cucurbita pepo (Zucchini)cpecpeB086
Cp4.1LG20g04050Cucurbita pepo (Zucchini)cpecpeB412
Cp4.1LG20g04050Cucurbita pepo (Zucchini)cpecpeB437
Cp4.1LG20g04050Cucurbita pepo (Zucchini)cpecpeB445
Cp4.1LG20g04050Cucumber (Gy14) v1cgycpeB0040
Cp4.1LG20g04050Cucumber (Gy14) v1cgycpeB0328
Cp4.1LG20g04050Cucumber (Gy14) v1cgycpeB0394
Cp4.1LG20g04050Cucurbita maxima (Rimu)cmacpeB044
Cp4.1LG20g04050Cucurbita maxima (Rimu)cmacpeB533
Cp4.1LG20g04050Cucurbita maxima (Rimu)cmacpeB677
Cp4.1LG20g04050Cucurbita maxima (Rimu)cmacpeB881
Cp4.1LG20g04050Cucurbita moschata (Rifu)cmocpeB403
Cp4.1LG20g04050Cucurbita moschata (Rifu)cmocpeB443
Cp4.1LG20g04050Cucurbita moschata (Rifu)cmocpeB631
Cp4.1LG20g04050Cucurbita moschata (Rifu)cmocpeB818
Cp4.1LG20g04050Wild cucumber (PI 183967)cpecpiB506
Cp4.1LG20g04050Wild cucumber (PI 183967)cpecpiB527
Cp4.1LG20g04050Cucumber (Chinese Long) v2cpecuB525
Cp4.1LG20g04050Cucumber (Chinese Long) v2cpecuB526
Cp4.1LG20g04050Bottle gourd (USVL1VR-Ls)cpelsiB415
Cp4.1LG20g04050Bottle gourd (USVL1VR-Ls)cpelsiB417
Cp4.1LG20g04050Watermelon (Charleston Gray)cpewcgB450
Cp4.1LG20g04050Watermelon (97103) v1cpewmB513
Cp4.1LG20g04050Melon (DHL92) v3.5.1cpemeB485
Cp4.1LG20g04050Melon (DHL92) v3.5.1cpemeB481
Cp4.1LG20g04050Cucumber (Gy14) v2cgybcpeB070
Cp4.1LG20g04050Melon (DHL92) v3.6.1cpemedB559
Cp4.1LG20g04050Melon (DHL92) v3.6.1cpemedB572
Cp4.1LG20g04050Silver-seed gourdcarcpeB0916
Cp4.1LG20g04050Silver-seed gourdcarcpeB1222
Cp4.1LG20g04050Silver-seed gourdcarcpeB1291
Cp4.1LG20g04050Cucumber (Chinese Long) v3cpecucB0650
Cp4.1LG20g04050Wax gourdcpewgoB0632