Cp4.1LG20g04050.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG20g04050.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Wound-responsive family protein
Location	Cp4.1LG20 : 2299471 .. 2299707 (+)
Sequence length	237

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCGTAGATTTTACAAGGGCGAGATCAGCGGAATGAAAGATCCGACGGCGAAGCGTGAGCCGATATTGAAGGCGGTGAGAGATCATTCGGGATCATCTTCGAATCAGGGGGCAAGGGGATTTTACAGTGGTATGGATTCGAGTGCGGTAATGGCTGCGAAGGCGGAGAAACTTAAGCGGGCCGAGGAGTCTCTCAGAACGGTTATGTATTTGAGCTGTTGGGGGCCTAACTAA

mRNA sequence

ATGAGCCGTAGATTTTACAAGGGCGAGATCAGCGGAATGAAAGATCCGACGGCGAAGCGTGAGCCGATATTGAAGGCGGTGAGAGATCATTCGGGATCATCTTCGAATCAGGGGGCAAGGGGATTTTACAGTGGTATGGATTCGAGTGCGGTAATGGCTGCGAAGGCGGAGAAACTTAAGCGGGCCGAGGAGTCTCTCAGAACGGTTATGTATTTGAGCTGTTGGGGGCCTAACTAA

Coding sequence (CDS)

ATGAGCCGTAGATTTTACAAGGGCGAGATCAGCGGAATGAAAGATCCGACGGCGAAGCGTGAGCCGATATTGAAGGCGGTGAGAGATCATTCGGGATCATCTTCGAATCAGGGGGCAAGGGGATTTTACAGTGGTATGGATTCGAGTGCGGTAATGGCTGCGAAGGCGGAGAAACTTAAGCGGGCCGAGGAGTCTCTCAGAACGGTTATGTATTTGAGCTGTTGGGGGCCTAACTAA

Protein sequence

MSRRFYKGEISGMKDPTAKREPILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLKRAEESLRTVMYLSCWGPN

Homology

[Close]

BLAST of Cp4.1LG20g04050.1 vs. TrEMBL
Match: B9H210_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s03330g PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-11
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 10 ISGMKDPTAKREP-ILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLKRAEESLRT 69
          + GMKD  +K +   +K++RD + SSS++ AR F   +DSSA M AK EK K+AEESLRT
Sbjct: 18 VQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSAYMNAKNEKFKQAEESLRT 77

Query: 70 VMYLSCWGPN 79
          VM+LSCWGPN
Sbjct: 78 VMFLSCWGPN 87

[Close]

BLAST of Cp4.1LG20g04050.1 vs. TrEMBL
Match: Q6YCG3_VITVI (Wound induced protein-like (Fragment) OS=Vitis vinifera GN=WIP PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.7e-10
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1


Query: 12 GMKDPTAKREPILKAVRDHS-GSSSNQGARGFYSGMDSSAVMAAK--AEKLKRAEESLRT 71
          GMKD  +K +P LK++RD    SSS+  AR F   +DS+A  A K   E+LK++EESLRT
Sbjct: 2  GMKDQASKCDPTLKSLRDSGCSSSSSTQARRFSGALDSAAFKAVKNAEERLKQSEESLRT 61

Query: 72 VMYLSCWGPN 79
          VMYLSCWGPN
Sbjct: 62 VMYLSCWGPN 71

[Close]

BLAST of Cp4.1LG20g04050.1 vs. TrEMBL
Match: A0A022QKW0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018114mg PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-09
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 1


Query: 1  MSRRFYKGEI---SGMKDPTAKREPILKAVRD-HSGSSSNQGARGFYSGMDSSAVMAAKA 60
          MSR  Y+  +    G+KDP +KR+  +K ++D ++ SSS++ AR   + ++S+ +   KA
Sbjct: 1  MSRVAYQAGMRVMQGIKDPASKRDTNIKTLKDSYAYSSSSRQARKLSAAIESTGL---KA 60

Query: 61 EKLKRAEESLRTVMYLSCWGPN 79
          +KLK+AEESLRTVMYLSCWGPN
Sbjct: 61 DKLKQAEESLRTVMYLSCWGPN 79

[Close]

BLAST of Cp4.1LG20g04050.1 vs. TrEMBL
Match: A0A0A0LV05_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G071850 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-09
Identity = 42/77 (54.55%), Postives = 48/77 (62.34%), Query Frame = 1


Query: 13 MKDPTAKREPILKAV-----------RDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLKR 72
          MKDPT K+EP+L+             R HS SSSNQ A           V+ +KAE+LKR
Sbjct: 1  MKDPTLKQEPMLEGPLRDHHHHHHRRRHHSESSSNQTA---------VPVVLSKAEQLKR 60

Query: 73 AEESLRTVMYLSCWGPN 79
          AEESLRTVMYLSCWGPN
Sbjct: 61 AEESLRTVMYLSCWGPN 68

[Close]

BLAST of Cp4.1LG20g04050.1 vs. TrEMBL
Match: V4UE40_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017323mg PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.7e-09
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 1


Query: 13 MKDPTAKREPILKAVRDHSG--SSSNQGARGFYSGMDSSAVMAAKAEKLKRAEESLRTVM 72
          ++D  +K +   K+++D +   SSS++ AR F +  DS+A  +A++EKL++AEESLRTVM
Sbjct: 21 VRDQASKGDSAFKSLKDSASACSSSSKQARCFSAAADSTAFKSARSEKLRQAEESLRTVM 80

Query: 73 YLSCWGPN 79
          YLSCWGPN
Sbjct: 81 YLSCWGPN 88

[Close]

BLAST of Cp4.1LG20g04050.1 vs. TAIR10
Match: AT4G10270.1 (AT4G10270.1 Wound-responsive family protein)

HSP 1 Score: 56.6 bits (135), Expect = 7.9e-09
Identity = 32/76 (42.11%), Postives = 46/76 (60.53%), Query Frame = 1


Query: 8  GEISGMKDPTA--KREPILKAVRDHSGS---SSNQGARGFYSGMDSSAVMAAKAEKLKRA 67
          G +  +KD     +   IL++V  H  +   S +QG R   S + ++   + ++EK K+A
Sbjct: 15 GAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSAAVTSSGESEKAKKA 74

Query: 68 EESLRTVMYLSCWGPN 79
          EESLRTVMYLSCWGPN
Sbjct: 75 EESLRTVMYLSCWGPN 90

[Close]

BLAST of Cp4.1LG20g04050.1 vs. TAIR10
Match: AT4G05070.1 (AT4G05070.1 Wound-responsive family protein)

HSP 1 Score: 51.6 bits (122), Expect = 2.5e-07
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = 1


Query: 17 TAKREPILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLKRAEESLRTVMYLSCWG 76
          T  R  + ++V     +SS+   R     ++SS   AA +E+L++AEESLRTVM+LSCWG
Sbjct: 26 TTLRSAVKESVSSPQSASSSSSVRRLKGDLESSRFGAAASERLRQAEESLRTVMFLSCWG 85

[Close]

BLAST of Cp4.1LG20g04050.1 vs. NCBI nr
Match: gi|224076777|ref|XP_002304995.1| (hypothetical protein POPTR_0004s03330g [Populus trichocarpa])

HSP 1 Score: 76.3 bits (186), Expect = 2.7e-11
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 1


Query: 10 ISGMKDPTAKREP-ILKAVRDHSGSSSNQGARGFYSGMDSSAVMAAKAEKLKRAEESLRT 69
          + GMKD  +K +   +K++RD + SSS++ AR F   +DSSA M AK EK K+AEESLRT
Sbjct: 18 VQGMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSAYMNAKNEKFKQAEESLRT 77

Query: 70 VMYLSCWGPN 79
          VM+LSCWGPN
Sbjct: 78 VMFLSCWGPN 87

[Close]

BLAST of Cp4.1LG20g04050.1 vs. NCBI nr
Match: gi|37724583|gb|AAO12870.1| (wound induced protein-like, partial [Vitis vinifera])

HSP 1 Score: 72.4 bits (176), Expect = 3.9e-10
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1


Query: 12 GMKDPTAKREPILKAVRDHS-GSSSNQGARGFYSGMDSSAVMAAK--AEKLKRAEESLRT 71
          GMKD  +K +P LK++RD    SSS+  AR F   +DS+A  A K   E+LK++EESLRT
Sbjct: 2  GMKDQASKCDPTLKSLRDSGCSSSSSTQARRFSGALDSAAFKAVKNAEERLKQSEESLRT 61

Query: 72 VMYLSCWGPN 79
          VMYLSCWGPN
Sbjct: 62 VMYLSCWGPN 71

[Close]

BLAST of Cp4.1LG20g04050.1 vs. NCBI nr
Match: gi|359495702|ref|XP_003635065.1| (PREDICTED: uncharacterized protein LOC100233117 [Vitis vinifera])

HSP 1 Score: 72.4 bits (176), Expect = 3.9e-10
Identity = 40/70 (57.14%), Postives = 50/70 (71.43%), Query Frame = 1


Query: 12 GMKDPTAKREPILKAVRDHS-GSSSNQGARGFYSGMDSSAVMAAK--AEKLKRAEESLRT 71
          GMKD  +K +P LK++RD    SSS+  AR F   +DS+A  A K   E+LK++EESLRT
Sbjct: 20 GMKDQASKCDPTLKSLRDSGCSSSSSTQARRFSGALDSAAFKAVKNAEERLKQSEESLRT 79

Query: 72 VMYLSCWGPN 79
          VMYLSCWGPN
Sbjct: 80 VMYLSCWGPN 89

[Close]

BLAST of Cp4.1LG20g04050.1 vs. NCBI nr
Match: gi|604315182|gb|EYU27888.1| (hypothetical protein MIMGU_mgv1a018114mg [Erythranthe guttata])

HSP 1 Score: 70.5 bits (171), Expect = 1.5e-09
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 1


Query: 1  MSRRFYKGEI---SGMKDPTAKREPILKAVRD-HSGSSSNQGARGFYSGMDSSAVMAAKA 60
          MSR  Y+  +    G+KDP +KR+  +K ++D ++ SSS++ AR   + ++S+ +   KA
Sbjct: 1  MSRVAYQAGMRVMQGIKDPASKRDTNIKTLKDSYAYSSSSRQARKLSAAIESTGL---KA 60

Query: 61 EKLKRAEESLRTVMYLSCWGPN 79
          +KLK+AEESLRTVMYLSCWGPN
Sbjct: 61 DKLKQAEESLRTVMYLSCWGPN 79

[Close]

BLAST of Cp4.1LG20g04050.1 vs. NCBI nr
Match: gi|659067929|ref|XP_008441945.1| (PREDICTED: transcription factor MafB-like [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 41/78 (52.56%), Postives = 49/78 (62.82%), Query Frame = 1


Query: 13 MKDPTAKREPILKAVRDHS------------GSSSNQGARGFYSGMDSSAVMAAKAEKLK 72
          MKDPT K+E +LK +RDH             GSSSNQ      +  +   V ++KAE+ K
Sbjct: 1  MKDPTVKQEAMLKGLRDHHLHHHHHHHHHHPGSSSNQ------TTANPVVVSSSKAEQHK 60

Query: 73 RAEESLRTVMYLSCWGPN 79
          RAEESLRTVMYLSCWGPN
Sbjct: 61 RAEESLRTVMYLSCWGPN 72

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g04050.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG20g04050.1 vs. TrEMBL


Match Name	E-value	Identity	Description
B9H210_POPTR	1.9e-11	57.14	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s03330g PE=4 SV=1	[more]
Q6YCG3_VITVI	2.7e-10	57.14	Wound induced protein-like (Fragment) OS=Vitis vinifera GN=WIP PE=2 SV=1	[more]
A0A022QKW0_ERYGU	1.0e-09	48.78	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a018114mg PE=4 SV=1	[more]
A0A0A0LV05_CUCSA	1.8e-09	54.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G071850 PE=4 SV=1	[more]
V4UE40_9ROSI	6.7e-09	50.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017323mg PE=4 SV=1	[more]

BLAST of Cp4.1LG20g04050.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10270.1	7.9e-09	42.11	Wound-responsive family protein	[more]
AT4G05070.1	2.5e-07	43.33	Wound-responsive family protein	[more]

BLAST of Cp4.1LG20g04050.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|224076777\|ref\|XP_002304995.1\|	2.7e-11	57.14	hypothetical protein POPTR_0004s03330g [Populus trichocarpa]	[more]
gi\|37724583\|gb\|AAO12870.1\|	3.9e-10	57.14	wound induced protein-like, partial [Vitis vinifera]	[more]
gi\|359495702\|ref\|XP_003635065.1\|	3.9e-10	57.14	PREDICTED: uncharacterized protein LOC100233117 [Vitis vinifera]	[more]
gi\|604315182\|gb\|EYU27888.1\|	1.5e-09	48.78	hypothetical protein MIMGU_mgv1a018114mg [Erythranthe guttata]	[more]
gi\|659067929\|ref\|XP_008441945.1\|	2.0e-09	52.56	PREDICTED: transcription factor MafB-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG20g04050	Cp4.1LG20g04050	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG20g04050.1:cds:001	Cp4.1LG20g04050.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG20g04050.1	Cp4.1LG20g04050.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 24..77 score: 2.3
None	No IPR available	PANTHER	PTHR33090	FAMILY NOT NAMED	coord: 10..78 score: 2.1
None	No IPR available	PANTHER	PTHR33090:SF2	SUBFAMILY NOT NAMED	coord: 10..78 score: 2.1