Cp4.1LG09g08770 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG09g08770
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionWound-responsive family protein
LocationCp4.1LG09 : 7986873 .. 7987262 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTGGAAAAAGCGAAACGTGGCAATATGGGCCCCACCAGCTACCCCTAGTTTTCATCGAAAGTCGACCCATTTAAACGAATCCTACACCGATTACCGAAGACGCCGGTCGTTTCAGCTGAGCAAGCTCCACTCTACTACTTTCTTCTACAGACCATTGTCGCTGCTCTTTTACGGCGGCGAGACCGGCGGAATGAATGATCAGAGGGCGGAGCGTGAGCCGGCGGCGAAGGGGCTGAGGGACCCTTCTGGATCTTCGAACCAGACGGCGGGGTTTTGCAGTGCTGTGGGTTCGAGTGCAGCAATGACGGCTAAGGCGGAGAAGGTTAAGCGGGCGGAGGAGTCTCTCAGAACGATTATGTATTTGAGCTGTTGGGGCCCTAACTAA

mRNA sequence

ATGTTTTGGAAAAAGCGAAACGTGGCAATATGGGCCCCACCAGCTACCCCTAGTTTTCATCGAAAGTCGACCCATTTAAACGAATCCTACACCGATTACCGAAGACGCCGGTCGTTTCAGCTGAGCAAGCTCCACTCTACTACTTTCTTCTACAGACCATTGTCGCTGCTCTTTTACGGCGGCGAGACCGGCGGAATGAATGATCAGAGGGCGGAGCGTGAGCCGGCGGCGAAGGGGCTGAGGGACCCTTCTGGATCTTCGAACCAGACGGCGGGGTTTTGCAGTGCTGTGGGTTCGAGTGCAGCAATGACGGCTAAGGCGGAGAAGGTTAAGCGGGCGGAGGAGTCTCTCAGAACGATTATGTATTTGAGCTGTTGGGGCCCTAACTAA

Coding sequence (CDS)

ATGTTTTGGAAAAAGCGAAACGTGGCAATATGGGCCCCACCAGCTACCCCTAGTTTTCATCGAAAGTCGACCCATTTAAACGAATCCTACACCGATTACCGAAGACGCCGGTCGTTTCAGCTGAGCAAGCTCCACTCTACTACTTTCTTCTACAGACCATTGTCGCTGCTCTTTTACGGCGGCGAGACCGGCGGAATGAATGATCAGAGGGCGGAGCGTGAGCCGGCGGCGAAGGGGCTGAGGGACCCTTCTGGATCTTCGAACCAGACGGCGGGGTTTTGCAGTGCTGTGGGTTCGAGTGCAGCAATGACGGCTAAGGCGGAGAAGGTTAAGCGGGCGGAGGAGTCTCTCAGAACGATTATGTATTTGAGCTGTTGGGGCCCTAACTAA

Protein sequence

MFWKKRNVAIWAPPATPSFHRKSTHLNESYTDYRRRRSFQLSKLHSTTFFYRPLSLLFYGGETGGMNDQRAEREPAAKGLRDPSGSSNQTAGFCSAVGSSAAMTAKAEKVKRAEESLRTIMYLSCWGPN
Homology
[Close]
BLAST of Cp4.1LG09g08770 vs. TrEMBL
Match: B9H210_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s03330g PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.5e-08
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = 1 

Query: 65  GMNDQRAEREPAA-KGLRDP--SGSSNQTAGFCSAVGSSAAMTAKAEKVKRAEESLRTIM 124
           GM DQ ++ + +A K LRD   S SS Q   F  +V SSA M AK EK K+AEESLRT+M
Sbjct: 20  GMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSAYMNAKNEKFKQAEESLRTVM 79

Query: 125 YLSCWGPN 130
           +LSCWGPN
Sbjct: 80  FLSCWGPN 87

[Close]
BLAST of Cp4.1LG09g08770 vs. TrEMBL
Match: V4UE40_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017323mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.6e-07
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 1 

Query: 66  MNDQRAEREPAAKGLRDP----SGSSNQTAGFCSAVGSSAAMTAKAEKVKRAEESLRTIM 125
           + DQ ++ + A K L+D     S SS Q   F +A  S+A  +A++EK+++AEESLRT+M
Sbjct: 21  VRDQASKGDSAFKSLKDSASACSSSSKQARCFSAAADSTAFKSARSEKLRQAEESLRTVM 80

Query: 126 YLSCWGPN 130
           YLSCWGPN
Sbjct: 81  YLSCWGPN 88

[Close]
BLAST of Cp4.1LG09g08770 vs. TrEMBL
Match: A0A067GK87_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034643mg PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.6e-07
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 1 

Query: 66  MNDQRAEREPAAKGLRDP----SGSSNQTAGFCSAVGSSAAMTAKAEKVKRAEESLRTIM 125
           + DQ ++ + A K L+D     S SS Q   F +A  S+A  +A++EK+++AEESLRT+M
Sbjct: 21  VRDQASKGDSAFKSLKDSASACSSSSKQARCFSTAADSTAFKSARSEKLRQAEESLRTVM 80

Query: 126 YLSCWGPN 130
           YLSCWGPN
Sbjct: 81  YLSCWGPN 88

[Close]
BLAST of Cp4.1LG09g08770 vs. TrEMBL
Match: Q6YCG3_VITVI (Wound induced protein-like (Fragment) OS=Vitis vinifera GN=WIP PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.1e-07
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1 

Query: 65  GMNDQRAEREPAAKGLRDP---SGSSNQTAGFCSAVGSSAAMTAK--AEKVKRAEESLRT 124
           GM DQ ++ +P  K LRD    S SS Q   F  A+ S+A    K   E++K++EESLRT
Sbjct: 2   GMKDQASKCDPTLKSLRDSGCSSSSSTQARRFSGALDSAAFKAVKNAEERLKQSEESLRT 61

Query: 125 IMYLSCWGPN 130
           +MYLSCWGPN
Sbjct: 62  VMYLSCWGPN 71

[Close]
BLAST of Cp4.1LG09g08770 vs. TrEMBL
Match: M5WPM4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014141mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.2e-06
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 1 

Query: 65  GMNDQRAEREPAAKGLRDPSGSSNQTAGFCSAVGSSAAMTAKAEKVKRAEESLRTIMYLS 124
           G+ +Q  +   ++      S SS Q   F S+V S A   A ++KVK+AEESLRT+MYLS
Sbjct: 20  GVKEQAPKCGGSSSSSSSSSSSSKQAWRFSSSVDSGAFKAANSDKVKQAEESLRTVMYLS 79

Query: 125 CWGPN 130
           CWGPN
Sbjct: 80  CWGPN 84

[Close]
BLAST of Cp4.1LG09g08770 vs. TAIR10
Match: AT4G10270.1 (AT4G10270.1 Wound-responsive family protein)

HSP 1 Score: 51.2 bits (121), Expect = 5.5e-07
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1 

Query: 95  SAVGSSAAMTAKAEKVKRAEESLRTIMYLSCWGPN 130
           S+V ++   + ++EK K+AEESLRT+MYLSCWGPN
Sbjct: 56  SSVSAAVTSSGESEKAKKAEESLRTVMYLSCWGPN 90

[Close]
BLAST of Cp4.1LG09g08770 vs. NCBI nr
Match: gi|224076777|ref|XP_002304995.1| (hypothetical protein POPTR_0004s03330g [Populus trichocarpa])

HSP 1 Score: 66.6 bits (161), Expect = 3.6e-08
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = 1 

Query: 65  GMNDQRAEREPAA-KGLRDP--SGSSNQTAGFCSAVGSSAAMTAKAEKVKRAEESLRTIM 124
           GM DQ ++ + +A K LRD   S SS Q   F  +V SSA M AK EK K+AEESLRT+M
Sbjct: 20  GMKDQASKCDSSAIKSLRDSACSSSSKQARRFSGSVDSSAYMNAKNEKFKQAEESLRTVM 79

Query: 125 YLSCWGPN 130
           +LSCWGPN
Sbjct: 80  FLSCWGPN 87

[Close]
BLAST of Cp4.1LG09g08770 vs. NCBI nr
Match: gi|641856930|gb|KDO75696.1| (hypothetical protein CISIN_1g034643mg [Citrus sinensis])

HSP 1 Score: 62.8 bits (151), Expect = 5.2e-07
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 1 

Query: 66  MNDQRAEREPAAKGLRDP----SGSSNQTAGFCSAVGSSAAMTAKAEKVKRAEESLRTIM 125
           + DQ ++ + A K L+D     S SS Q   F +A  S+A  +A++EK+++AEESLRT+M
Sbjct: 21  VRDQASKGDSAFKSLKDSASACSSSSKQARCFSTAADSTAFKSARSEKLRQAEESLRTVM 80

Query: 126 YLSCWGPN 130
           YLSCWGPN
Sbjct: 81  YLSCWGPN 88

[Close]
BLAST of Cp4.1LG09g08770 vs. NCBI nr
Match: gi|567913773|ref|XP_006449200.1| (hypothetical protein CICLE_v10017323mg [Citrus clementina])

HSP 1 Score: 62.8 bits (151), Expect = 5.2e-07
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 1 

Query: 66  MNDQRAEREPAAKGLRDP----SGSSNQTAGFCSAVGSSAAMTAKAEKVKRAEESLRTIM 125
           + DQ ++ + A K L+D     S SS Q   F +A  S+A  +A++EK+++AEESLRT+M
Sbjct: 21  VRDQASKGDSAFKSLKDSASACSSSSKQARCFSAAADSTAFKSARSEKLRQAEESLRTVM 80

Query: 126 YLSCWGPN 130
           YLSCWGPN
Sbjct: 81  YLSCWGPN 88

[Close]
BLAST of Cp4.1LG09g08770 vs. NCBI nr
Match: gi|37724583|gb|AAO12870.1| (wound induced protein-like, partial [Vitis vinifera])

HSP 1 Score: 62.0 bits (149), Expect = 8.8e-07
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 1 

Query: 65  GMNDQRAEREPAAKGLRDP---SGSSNQTAGFCSAVGSSAAMTAK--AEKVKRAEESLRT 124
           GM DQ ++ +P  K LRD    S SS Q   F  A+ S+A    K   E++K++EESLRT
Sbjct: 2   GMKDQASKCDPTLKSLRDSGCSSSSSTQARRFSGALDSAAFKAVKNAEERLKQSEESLRT 61

Query: 125 IMYLSCWGPN 130
           +MYLSCWGPN
Sbjct: 62  VMYLSCWGPN 71

[Close]
BLAST of Cp4.1LG09g08770 vs. NCBI nr
Match: gi|720070954|ref|XP_010277915.1| (PREDICTED: uncharacterized protein LOC104612255 [Nelumbo nucifera])

HSP 1 Score: 62.0 bits (149), Expect = 8.8e-07
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 1 

Query: 52  RPLSLLFYGGETG---GMNDQRAEREPAAKGLRDPSGSSNQTAGFCSAVGSSAAMTAKAE 111
           R +S +FY   +    G+ DQ  + +   K L+D + SS +   F SA+ SS   T   E
Sbjct: 4   RCMSRVFYQAGSRAMQGIKDQATKYDSTFKSLKDSTTSSAKVRRFSSALDSSVK-TPNTE 63

Query: 112 KVKRAEESLRTIMYLSCWGPN 130
           K+K+AEESLRT+MYLSCWGPN
Sbjct: 64  KLKQAEESLRTVMYLSCWGPN 83

The following BLAST results are available for this feature:
BLAST of Cp4.1LG09g08770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG09g08770 vs. TrEMBL
Match NameE-valueIdentityDescription
B9H210_POPTR2.5e-0857.35Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s03330g PE=4 SV=1[more]
V4UE40_9ROSI3.6e-0748.53Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017323mg PE=4 SV=1[more]
A0A067GK87_CITSI3.6e-0748.53Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034643mg PE=4 SV=1[more]
Q6YCG3_VITVI6.1e-0750.00Wound induced protein-like (Fragment) OS=Vitis vinifera GN=WIP PE=2 SV=1[more]
M5WPM4_PRUPE5.2e-0647.69Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014141mg PE=4 SV=1[more]
BLAST of Cp4.1LG09g08770 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G10270.15.5e-0760.00 Wound-responsive family protein[more]
BLAST of Cp4.1LG09g08770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|224076777|ref|XP_002304995.1|3.6e-0857.35hypothetical protein POPTR_0004s03330g [Populus trichocarpa][more]
gi|641856930|gb|KDO75696.1|5.2e-0748.53hypothetical protein CISIN_1g034643mg [Citrus sinensis][more]
gi|567913773|ref|XP_006449200.1|5.2e-0748.53hypothetical protein CICLE_v10017323mg [Citrus clementina][more]
gi|37724583|gb|AAO12870.1|8.8e-0750.00wound induced protein-like, partial [Vitis vinifera][more]
gi|720070954|ref|XP_010277915.1|8.8e-0745.68PREDICTED: uncharacterized protein LOC104612255 [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR022251DUF3774_wound-induced
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG09g08770.1Cp4.1LG09g08770.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 85..128
score: 3.6
NoneNo IPR availablePANTHERPTHR33090FAMILY NOT NAMEDcoord: 85..129
score: 5.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG09g08770CmaCh13G006820Cucurbita maxima (Rimu)cmacpeB212
Cp4.1LG09g08770CmaCh18G003410Cucurbita maxima (Rimu)cmacpeB415
Cp4.1LG09g08770Cla019452Watermelon (97103) v1cpewmB025
Cp4.1LG09g08770MELO3C002552Melon (DHL92) v3.5.1cpemeB026
Cp4.1LG09g08770MELO3C002552.2Melon (DHL92) v3.6.1cpemedB031
Cp4.1LG09g08770CsaV3_1G011730Cucumber (Chinese Long) v3cpecucB0031
Cp4.1LG09g08770Bhi08G001549Wax gourdcpewgoB0047
Cp4.1LG09g08770Carg14657Silver-seed gourdcarcpeB0211
Cp4.1LG09g08770Carg21467Silver-seed gourdcarcpeB1312
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG09g08770Cp4.1LG20g04050Cucurbita pepo (Zucchini)cpecpeB048
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG09g08770Cucurbita pepo (Zucchini)cpecpeB019
Cp4.1LG09g08770Cucurbita pepo (Zucchini)cpecpeB044
Cp4.1LG09g08770Cucurbita pepo (Zucchini)cpecpeB050
Cp4.1LG09g08770Cucurbita pepo (Zucchini)cpecpeB056
Cp4.1LG09g08770Cucurbita pepo (Zucchini)cpecpeB059
Cp4.1LG09g08770Cucumber (Gy14) v1cgycpeB0324
Cp4.1LG09g08770Cucurbita maxima (Rimu)cmacpeB026
Cp4.1LG09g08770Cucurbita maxima (Rimu)cmacpeB859
Cp4.1LG09g08770Cucurbita moschata (Rifu)cmocpeB002
Cp4.1LG09g08770Cucurbita moschata (Rifu)cmocpeB182
Cp4.1LG09g08770Cucurbita moschata (Rifu)cmocpeB377
Cp4.1LG09g08770Cucurbita moschata (Rifu)cmocpeB799
Cp4.1LG09g08770Cucumber (Chinese Long) v2cpecuB029
Cp4.1LG09g08770Bottle gourd (USVL1VR-Ls)cpelsiB026
Cp4.1LG09g08770Bottle gourd (USVL1VR-Ls)cpelsiB034
Cp4.1LG09g08770Watermelon (Charleston Gray)cpewcgB036
Cp4.1LG09g08770Cucumber (Gy14) v2cgybcpeB018
Cp4.1LG09g08770Cucumber (Gy14) v2cgybcpeB707
Cp4.1LG09g08770Silver-seed gourdcarcpeB0911
Cp4.1LG09g08770Silver-seed gourdcarcpeB1012
Cp4.1LG09g08770Silver-seed gourdcarcpeB1218
Cp4.1LG09g08770Silver-seed gourdcarcpeB1251
Cp4.1LG09g08770Cucumber (Chinese Long) v3cpecucB0054
Cp4.1LG09g08770Wax gourdcpewgoB0033
Cp4.1LG09g08770Wild cucumber (PI 183967)cpecpiB025