Cp4.1LG20g02550 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG20g02550
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	60S ribosomal protein L27A
Location	Cp4.1LG20 : 1472626 .. 1473066 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACCCGATTCAAGAAGAACAGGAAGAAGCGCGGTCACGTGAGCGCCGGCCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGTGGTCGTGGTAACGCTGGAGGTATGCACCATCACAGAATCCTGTTTGACAAATACCATCCTGGTTATTTTGGAAAAGTTGGTATGAGGTACTTCCACAAGCTCCGAAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCCCTCGTCCCCCAGGAAGTGAAGGACAAGGCTTCTAAGGATAATGCCCCTTTGGTTGATGTTACCCAGTTTGGGTATTTCAAAGTTTTGGGCAAAGGGGTTTTGCCCGAGAACCAGCCCATCGTTGTGAAAGCCAAGCTCATCTCGAAAATTGCAGAGAAGAAGATCAAGGAGAATGGTGGTGCTGTTGTCCTAACGGCTTAG

mRNA sequence

ATGACGACCCGATTCAAGAAGAACAGGAAGAAGCGCGGTCACGTGAGCGCCGGCCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGTGGTCGTGGTAACGCTGGAGGTATGCACCATCACAGAATCCTGTTTGACAAATACCATCCTGGTTATTTTGGAAAAGTTGGTATGAGGTACTTCCACAAGCTCCGAAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCCCTCGTCCCCCAGGAAGTGAAGGACAAGGCTTCTAAGGATAATGCCCCTTTGGTTGATGTTACCCAGTTTGGGTATTTCAAAGTTTTGGGCAAAGGGGTTTTGCCCGAGAACCAGCCCATCGTTGTGAAAGCCAAGCTCATCTCGAAAATTGCAGAGAAGAAGATCAAGGAGAATGGTGGTGCTGTTGTCCTAACGGCTTAG

Coding sequence (CDS)

ATGACGACCCGATTCAAGAAGAACAGGAAGAAGCGCGGTCACGTGAGCGCCGGCCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGTGGTCGTGGTAACGCTGGAGGTATGCACCATCACAGAATCCTGTTTGACAAATACCATCCTGGTTATTTTGGAAAAGTTGGTATGAGGTACTTCCACAAGCTCCGAAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCCCTCGTCCCCCAGGAAGTGAAGGACAAGGCTTCTAAGGATAATGCCCCTTTGGTTGATGTTACCCAGTTTGGGTATTTCAAAGTTTTGGGCAAAGGGGTTTTGCCCGAGAACCAGCCCATCGTTGTGAAAGCCAAGCTCATCTCGAAAATTGCAGAGAAGAAGATCAAGGAGAATGGTGGTGCTGTTGTCCTAACGGCTTAG

Protein sequence

MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPIVVKAKLISKIAEKKIKENGGAVVLTA

Homology

[Close]

BLAST of Cp4.1LG20g02550 vs. Swiss-Prot
Match: R27A3_ARATH (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 271.2 bits (692), Expect = 6.8e-72
Identity = 130/146 (89.04%), Postives = 139/146 (95.21%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K++KDN PL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Cp4.1LG20g02550 vs. Swiss-Prot
Match: R27A2_ARATH (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 2.8e-70
Identity = 128/146 (87.67%), Postives = 136/146 (93.15%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K+SKDN PL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Cp4.1LG20g02550 vs. Swiss-Prot
Match: RL27A_DICDI (60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.9e-50
Identity = 97/149 (65.10%), Postives = 121/149 (81.21%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M TRF K+RK RG V AG+GR+GKHRKHPGGRGNAGG+ HHRI FDKYHPGYFGK+GMR+
Sbjct: 1   MPTRFSKHRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKLGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN---APLVDVTQFGYFKVLGKGVLPEN 120
           FH LRN+++CP V+++K+W+LVP+ V+   +  N   AP+VDVTQ G+FKVLG G+LP  
Sbjct: 61  FHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-T 120

Query: 121 QPIVVKAKLISKIAEKKIKENGGAVVLTA 147
           QPI+VKA+  SK+AEKKIK  GGA +L A
Sbjct: 121 QPIIVKARYFSKVAEKKIKAVGGACILVA 148

[Close]

BLAST of Cp4.1LG20g02550 vs. Swiss-Prot
Match: RL27A_OSCTI (60S ribosomal protein L27a OS=Oscheius tipulae GN=rpl-27a PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.3e-50
Identity = 98/146 (67.12%), Postives = 112/146 (76.71%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M    +K RK RGHVS GHGRIGKHRKHPGGRGNAGG HHHRI  DKYHPGYFGKVGMR 
Sbjct: 1   MAHSLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120
           FH  +N  YCP VNVD+LW+LVP+E K K S + AP++D  + GYFKVLGKG+LP+ QP+
Sbjct: 61  FHLNKNHHYCPTVNVDRLWALVPEEQKTKVSAEKAPVIDCVKAGYFKVLGKGLLPK-QPL 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           +VKAK  S  AE KIK  GGA +L A
Sbjct: 121 IVKAKFFSHEAENKIKAAGGACILVA 145

[Close]

BLAST of Cp4.1LG20g02550 vs. Swiss-Prot
Match: RL27A_BOVIN (60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3)

HSP 1 Score: 199.1 bits (505), Expect = 3.3e-50
Identity = 98/149 (65.77%), Postives = 120/149 (80.54%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN---APLVDVTQFGYFKVLGKGVLPEN 120
           +H  RN+ +CP VN+DKLW+LV ++ +  A+K+    AP++DV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPIVVKAKLISKIAEKKIKENGGAVVLTA 147
           QP++VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of Cp4.1LG20g02550 vs. TrEMBL
Match: A0A067KGS0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11415 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 9.8e-78
Identity = 143/146 (97.95%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DKLWSL+PQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSLIPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKL+SKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Cp4.1LG20g02550 vs. TrEMBL
Match: A0A0A0LQZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046840 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 6.4e-77
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN PL+DVTQFGYFKVLGKGVLPEN+P+
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENKPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Cp4.1LG20g02550 vs. TrEMBL
Match: B6VC54_VERFO (60S ribosomal protein L27A OS=Vernicia fordii GN=RPL27A PE=2 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.4e-76
Identity = 140/146 (95.89%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DKLWS+VPQEVKDKASKDN P++DVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMVPQEVKDKASKDNVPMLDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKL+SKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Cp4.1LG20g02550 vs. TrEMBL
Match: A0A0A0KQ56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598710 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.2e-76
Identity = 141/146 (96.58%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDK+WSL+PQEVKDKASKDN PLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKL+SKIAEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Cp4.1LG20g02550 vs. TrEMBL
Match: I3NMK8_HEVBR (60S ribosomal protein L27B OS=Hevea brasiliensis GN=RPL27B PE=2 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.2e-75
Identity = 137/146 (93.84%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DKLWSL+PQEVKDKASKDN P++DVTQ+GYFKVLGKG LPEN+PI
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSLIPQEVKDKASKDNVPMIDVTQYGYFKVLGKGALPENKPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKL+SKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Cp4.1LG20g02550 vs. TAIR10
Match: AT1G70600.1 (AT1G70600.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 271.2 bits (692), Expect = 3.8e-73
Identity = 130/146 (89.04%), Postives = 139/146 (95.21%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K++KDN PL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Cp4.1LG20g02550 vs. TAIR10
Match: AT1G23290.1 (AT1G23290.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 265.8 bits (678), Expect = 1.6e-71
Identity = 128/146 (87.67%), Postives = 136/146 (93.15%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K+SKDN PL+DVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Cp4.1LG20g02550 vs. TAIR10
Match: AT1G12960.1 (AT1G12960.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 128.6 bits (322), Expect = 3.1e-30
Identity = 78/145 (53.79%), Postives = 83/145 (57.24%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTT  KK R  R HVS GHGR GKHRK PG RGNAG                   VGMRY
Sbjct: 1   MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAG-------------------VGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYC IVN+DKLWS+V                          LGKG LPEN+P+
Sbjct: 61  FHKLRNKFYCQIVNLDKLWSMV--------------------------LGKGFLPENKPV 100

Query: 121 VVKAKLISKIAEKKIKENGGAVVLT 146
           VVKAKL+S   EKKIKE G AVVLT
Sbjct: 121 VVKAKLVSNTDEKKIKEAGSAVVLT 100

[Close]

BLAST of Cp4.1LG20g02550 vs. NCBI nr
Match: gi|802650546|ref|XP_012079990.1| (PREDICTED: 60S ribosomal protein L27a-3-like [Jatropha curcas])

HSP 1 Score: 297.4 bits (760), Expect = 1.4e-77
Identity = 143/146 (97.95%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DKLWSL+PQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSLIPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKL+SKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Cp4.1LG20g02550 vs. NCBI nr
Match: gi|659067312|ref|XP_008438796.1| (PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo])

HSP 1 Score: 296.2 bits (757), Expect = 3.1e-77
Identity = 143/146 (97.95%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN PL+DVTQFGYFKVLGKGVLPENQP+
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Cp4.1LG20g02550 vs. NCBI nr
Match: gi|449469566|ref|XP_004152490.1| (PREDICTED: 60S ribosomal protein L27a-3 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 9.1e-77
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN PL+DVTQFGYFKVLGKGVLPEN+P+
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENKPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Cp4.1LG20g02550 vs. NCBI nr
Match: gi|209967449|gb|ACJ02353.1| (60S ribosomal protein L27A [Vernicia fordii])

HSP 1 Score: 293.5 bits (750), Expect = 2.0e-76
Identity = 140/146 (95.89%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVN+DKLWS+VPQEVKDKASKDN P++DVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMVPQEVKDKASKDNVPMLDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKL+SKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Cp4.1LG20g02550 vs. NCBI nr
Match: gi|449434971|ref|XP_004135269.1| (PREDICTED: 60S ribosomal protein L27a-3 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 4.5e-76
Identity = 141/146 (96.58%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120
           FHKLRNKFYCPIVNVDK+WSL+PQEVKDKASKDN PLVDVTQFGYFKVLGKGVLPENQPI
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKL+SKIAEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

The following BLAST results are available for this feature:

BLAST of Cp4.1LG20g02550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R27A3_ARATH	6.8e-72	89.04	60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2	[more]
R27A2_ARATH	2.8e-70	87.67	60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1	[more]
RL27A_DICDI	1.9e-50	65.10	60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1	[more]
RL27A_OSCTI	3.3e-50	67.12	60S ribosomal protein L27a OS=Oscheius tipulae GN=rpl-27a PE=3 SV=1	[more]
RL27A_BOVIN	3.3e-50	65.77	60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3	[more]

BLAST of Cp4.1LG20g02550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067KGS0_JATCU	9.8e-78	97.95	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11415 PE=3 SV=1	[more]
A0A0A0LQZ7_CUCSA	6.4e-77	97.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046840 PE=3 SV=1	[more]
B6VC54_VERFO	1.4e-76	95.89	60S ribosomal protein L27A OS=Vernicia fordii GN=RPL27A PE=2 SV=1	[more]
A0A0A0KQ56_CUCSA	3.2e-76	96.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598710 PE=3 SV=1	[more]
I3NMK8_HEVBR	1.2e-75	93.84	60S ribosomal protein L27B OS=Hevea brasiliensis GN=RPL27B PE=2 SV=1	[more]

BLAST of Cp4.1LG20g02550 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70600.1	3.8e-73	89.04	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G23290.1	1.6e-71	87.67	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G12960.1	3.1e-30	53.79	Ribosomal protein L18e/L15 superfamily protein	[more]

BLAST of Cp4.1LG20g02550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|802650546\|ref\|XP_012079990.1\|	1.4e-77	97.95	PREDICTED: 60S ribosomal protein L27a-3-like [Jatropha curcas]	[more]
gi\|659067312\|ref\|XP_008438796.1\|	3.1e-77	97.95	PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo]	[more]
gi\|449469566\|ref\|XP_004152490.1\|	9.1e-77	97.26	PREDICTED: 60S ribosomal protein L27a-3 [Cucumis sativus]	[more]
gi\|209967449\|gb\|ACJ02353.1\|	2.0e-76	95.89	60S ribosomal protein L27A [Vernicia fordii]	[more]
gi\|449434971\|ref\|XP_004135269.1\|	4.5e-76	96.58	PREDICTED: 60S ribosomal protein L27a-3 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular
GO:0015934	large ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR021131	Ribosomal_L18e/L15P
IPR001196	Ribosomal_L15_CS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG20g02550.1	Cp4.1LG20g02550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001196	Ribosomal protein L15, conserved site	PROSITE	PS00475	RIBOSOMAL_L15	coord: 107..139 scor
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF00828	Ribosomal_L27A	coord: 28..143 score: 1.2
IPR021131	Ribosomal protein L18e/L15P	unknown	SSF52080	Ribosomal proteins L15p and L18e	coord: 6..145 score: 2.49
None	No IPR available	GENE3D	G3DSA:3.100.10.10		coord: 26..144 score: 3.0
None	No IPR available	PANTHER	PTHR11721	60S RIBOSOMAL PROTEIN L27A	coord: 1..146 score: 4.4E
None	No IPR available	PANTHER	PTHR11721:SF6	SUBFAMILY NOT NAMED	coord: 1..146 score: 4.4E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG20g02550	Cucsa.098720	Cucumber (Gy14) v1	cgycpeB0203
Cp4.1LG20g02550	CmaCh13G008630	Cucurbita maxima (Rimu)	cmacpeB234
Cp4.1LG20g02550	CmaCh18G001880	Cucurbita maxima (Rimu)	cmacpeB439
Cp4.1LG20g02550	CmoCh18G001490	Cucurbita moschata (Rifu)	cmocpeB404
Cp4.1LG20g02550	CmoCh13G008940	Cucurbita moschata (Rifu)	cmocpeB201
Cp4.1LG20g02550	Cla003439	Watermelon (97103) v1	cpewmB520
Cp4.1LG20g02550	Csa1G046840	Cucumber (Chinese Long) v2	cpecuB505
Cp4.1LG20g02550	MELO3C002294	Melon (DHL92) v3.5.1	cpemeB478
Cp4.1LG20g02550	ClCG01G013450	Watermelon (Charleston Gray)	cpewcgB452
Cp4.1LG20g02550	CSPI01G08770	Wild cucumber (PI 183967)	cpecpiB505
Cp4.1LG20g02550	Lsi02G004080	Bottle gourd (USVL1VR-Ls)	cpelsiB418
Cp4.1LG20g02550	MELO3C002294.2	Melon (DHL92) v3.6.1	cpemedB560
Cp4.1LG20g02550	CsaV3_1G008800	Cucumber (Chinese Long) v3	cpecucB0623
Cp4.1LG20g02550	Bhi08G001344	Wax gourd	cpewgoB0638
Cp4.1LG20g02550	CsGy1G008710	Cucumber (Gy14) v2	cgybcpeB069
Cp4.1LG20g02550	Carg07656	Silver-seed gourd	carcpeB1401
Cp4.1LG20g02550	Carg06747	Silver-seed gourd	carcpeB0696

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG20g02550	Cp4.1LG09g09960	Cucurbita pepo (Zucchini)	cpecpeB049

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG20g02550	Cucumber (Chinese Long) v3	cpecucB0634
Cp4.1LG20g02550	Wild cucumber (PI 183967)	cpecpiB517
Cp4.1LG20g02550	Cucumber (Chinese Long) v2	cpecuB515
Cp4.1LG20g02550	Watermelon (Charleston Gray)	cpewcgB469
Cp4.1LG20g02550	Watermelon (97103) v1	cpewmB509
Cp4.1LG20g02550	Melon (DHL92) v3.5.1	cpemeB470
Cp4.1LG20g02550	Cucumber (Gy14) v2	cgybcpeB080
Cp4.1LG20g02550	Melon (DHL92) v3.6.1	cpemedB552