Cp4.1LG09g09960 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG09g09960
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	60S ribosomal protein L27A
Location	Cp4.1LG09 : 8908198 .. 8908638 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACCCGCTTCAAGAAGAACAGGAAGAAGCGCGGTCACGTGAGCGCCGGTCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGTGGTCGTGGTAACGCCGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTCGGCAAAGTTGGAATGAGGTACTTCCACAAGCTCCGAAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCTCTCGTACCTCAAGAAGTCAAGGACAAGGCTTCTAAGGATAACGTCCCTTTGATTGATGTTACTCAGTTTGGGTATTTCAAAGTTTTGGGCAAAGGAGGTTTGCCTGAGAATCAGCCCGTCGTTGTGAAAGCCAAGCTCATCTCCAAAATTGCCGAGAAGAAGATCAAAGAAAATGGTGGTGCGGTTGTCCTTACGGCTTAG

mRNA sequence

ATGACGACCCGCTTCAAGAAGAACAGGAAGAAGCGCGGTCACGTGAGCGCCGGTCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGTGGTCGTGGTAACGCCGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTCGGCAAAGTTGGAATGAGGTACTTCCACAAGCTCCGAAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCTCTCGTACCTCAAGAAGTCAAGGACAAGGCTTCTAAGGATAACGTCCCTTTGATTGATGTTACTCAGTTTGGGTATTTCAAAGTTTTGGGCAAAGGAGGTTTGCCTGAGAATCAGCCCGTCGTTGTGAAAGCCAAGCTCATCTCCAAAATTGCCGAGAAGAAGATCAAAGAAAATGGTGGTGCGGTTGTCCTTACGGCTTAG

Coding sequence (CDS)

ATGACGACCCGCTTCAAGAAGAACAGGAAGAAGCGCGGTCACGTGAGCGCCGGTCATGGTCGTATCGGCAAGCACCGTAAGCATCCTGGTGGTCGTGGTAACGCCGGAGGTATGCACCACCACAGAATCCTCTTCGACAAATACCATCCTGGTTATTTCGGCAAAGTTGGAATGAGGTACTTCCACAAGCTCCGAAACAAATTCTATTGCCCCATTGTAAACGTCGACAAGCTCTGGTCTCTCGTACCTCAAGAAGTCAAGGACAAGGCTTCTAAGGATAACGTCCCTTTGATTGATGTTACTCAGTTTGGGTATTTCAAAGTTTTGGGCAAAGGAGGTTTGCCTGAGAATCAGCCCGTCGTTGTGAAAGCCAAGCTCATCTCCAAAATTGCCGAGAAGAAGATCAAAGAAAATGGTGGTGCGGTTGTCCTTACGGCTTAG

Protein sequence

MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPVVVKAKLISKIAEKKIKENGGAVVLTA

Homology

[Close]

BLAST of Cp4.1LG09g09960 vs. Swiss-Prot
Match: R27A3_ARATH (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 273.5 bits (698), Expect = 1.4e-72
Identity = 132/146 (90.41%), Postives = 140/146 (95.89%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K++KDNVPLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Cp4.1LG09g09960 vs. Swiss-Prot
Match: R27A2_ARATH (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 5.7e-71
Identity = 130/146 (89.04%), Postives = 137/146 (93.84%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K+SKDNVPLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Cp4.1LG09g09960 vs. Swiss-Prot
Match: RL27A_BOVIN (60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3)

HSP 1 Score: 198.7 bits (504), Expect = 4.3e-50
Identity = 99/149 (66.44%), Postives = 119/149 (79.87%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN---VPLIDVTQFGYFKVLGKGGLPEN 120
           +H  RN+ +CP VN+DKLW+LV ++ +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPVVVKAKLISKIAEKKIKENGGAVVLTA 147
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of Cp4.1LG09g09960 vs. Swiss-Prot
Match: RL27A_MOUSE (60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=1 SV=5)

HSP 1 Score: 198.7 bits (504), Expect = 4.3e-50
Identity = 99/149 (66.44%), Postives = 119/149 (79.87%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN---VPLIDVTQFGYFKVLGKGGLPEN 120
           +H  RN+ +CP VN+DKLW+LV ++ +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGVAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPVVVKAKLISKIAEKKIKENGGAVVLTA 147
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of Cp4.1LG09g09960 vs. Swiss-Prot
Match: RL27A_RAT (60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3)

HSP 1 Score: 198.7 bits (504), Expect = 4.3e-50
Identity = 99/149 (66.44%), Postives = 119/149 (79.87%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M +R +K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDN---VPLIDVTQFGYFKVLGKGGLPEN 120
           +H  RN+ +CP VN+DKLW+LV ++ +  A+K+     P+IDV + GY+KVLGKG LP+ 
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLPK- 120

Query: 121 QPVVVKAKLISKIAEKKIKENGGAVVLTA 147
           QPV+VKAK  S+ AE+KIK  GGA VL A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of Cp4.1LG09g09960 vs. TrEMBL
Match: A0A0A0LQZ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046840 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 6.4e-77
Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKG LPEN+PV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENKPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Cp4.1LG09g09960 vs. TrEMBL
Match: B6VC54_VERFO (60S ribosomal protein L27A OS=Vernicia fordii GN=RPL27A PE=2 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 2.4e-76
Identity = 139/146 (95.21%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVN+DKLWS+VPQEVKDKASKDNVP++DVTQFGYFKVLGKG LPENQP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMVPQEVKDKASKDNVPMLDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKL+SKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Cp4.1LG09g09960 vs. TrEMBL
Match: A0A067KGS0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11415 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 2.4e-76
Identity = 139/146 (95.21%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVN+DKLWSL+PQEVKDKASKDN PL+DVTQFGYFKVLGKG LPENQP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSLIPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKL+SKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Cp4.1LG09g09960 vs. TrEMBL
Match: I3NMK8_HEVBR (60S ribosomal protein L27B OS=Hevea brasiliensis GN=RPL27B PE=2 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 3.2e-76
Identity = 138/146 (94.52%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVN+DKLWSL+PQEVKDKASKDNVP+IDVTQ+GYFKVLGKG LPEN+P+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSLIPQEVKDKASKDNVPMIDVTQYGYFKVLGKGALPENKPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKL+SKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Cp4.1LG09g09960 vs. TrEMBL
Match: A0A0A0KQ56_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598710 PE=3 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 9.2e-76
Identity = 139/146 (95.21%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDK+WSL+PQEVKDKASKDNVPL+DVTQFGYFKVLGKG LPENQP+
Sbjct: 61  FHKLRNKFYCPIVNVDKIWSLIPQEVKDKASKDNVPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKL+SKIAEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Cp4.1LG09g09960 vs. TAIR10
Match: AT1G70600.1 (AT1G70600.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 273.5 bits (698), Expect = 7.7e-74
Identity = 132/146 (90.41%), Postives = 140/146 (95.89%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K++KDNVPLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Cp4.1LG09g09960 vs. TAIR10
Match: AT1G23290.1 (AT1G23290.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 268.1 bits (684), Expect = 3.2e-72
Identity = 130/146 (89.04%), Postives = 137/146 (93.84%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           M T  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKF+CPIVN+DKLWSLVP++VK K+SKDNVPLIDVTQ G+FKVLGKG LPEN+P 
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKDNVPLIDVTQHGFFKVLGKGHLPENKPF 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISK AEKKIKE GGAVVLTA
Sbjct: 121 VVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Cp4.1LG09g09960 vs. TAIR10
Match: AT1G12960.1 (AT1G12960.1 Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 128.6 bits (322), Expect = 3.1e-30
Identity = 79/145 (54.48%), Postives = 83/145 (57.24%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTT  KK R  R HVS GHGR GKHRK PG RGNAG                   VGMRY
Sbjct: 1   MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAG-------------------VGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYC IVN+DKLWS+V                          LGKG LPEN+PV
Sbjct: 61  FHKLRNKFYCQIVNLDKLWSMV--------------------------LGKGFLPENKPV 100

Query: 121 VVKAKLISKIAEKKIKENGGAVVLT 146
           VVKAKL+S   EKKIKE G AVVLT
Sbjct: 121 VVKAKLVSNTDEKKIKEAGSAVVLT 100

[Close]

BLAST of Cp4.1LG09g09960 vs. NCBI nr
Match: gi|659067312|ref|XP_008438796.1| (PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo])

HSP 1 Score: 296.2 bits (757), Expect = 3.1e-77
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKG LPENQPV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENQPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Cp4.1LG09g09960 vs. NCBI nr
Match: gi|449469566|ref|XP_004152490.1| (PREDICTED: 60S ribosomal protein L27a-3 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 9.1e-77
Identity = 144/146 (98.63%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKG LPEN+PV
Sbjct: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGVLPENKPV 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKLISKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLISKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Cp4.1LG09g09960 vs. NCBI nr
Match: gi|802650546|ref|XP_012079990.1| (PREDICTED: 60S ribosomal protein L27a-3-like [Jatropha curcas])

HSP 1 Score: 292.7 bits (748), Expect = 3.5e-76
Identity = 139/146 (95.21%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVN+DKLWSL+PQEVKDKASKDN PL+DVTQFGYFKVLGKG LPENQP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSLIPQEVKDKASKDNAPLVDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKL+SKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Cp4.1LG09g09960 vs. NCBI nr
Match: gi|209967449|gb|ACJ02353.1| (60S ribosomal protein L27A [Vernicia fordii])

HSP 1 Score: 292.7 bits (748), Expect = 3.5e-76
Identity = 139/146 (95.21%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVN+DKLWS+VPQEVKDKASKDNVP++DVTQFGYFKVLGKG LPENQP+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSMVPQEVKDKASKDNVPMLDVTQFGYFKVLGKGVLPENQPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKL+SKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

[Close]

BLAST of Cp4.1LG09g09960 vs. NCBI nr
Match: gi|313586469|gb|ADR71245.1| (60S ribosomal protein L27B [Hevea brasiliensis])

HSP 1 Score: 292.4 bits (747), Expect = 4.5e-76
Identity = 138/146 (94.52%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60
           MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNKFYCPIVNVDKLWSLVPQEVKDKASKDNVPLIDVTQFGYFKVLGKGGLPENQPV 120
           FHKLRNKFYCPIVN+DKLWSL+PQEVKDKASKDNVP+IDVTQ+GYFKVLGKG LPEN+P+
Sbjct: 61  FHKLRNKFYCPIVNIDKLWSLIPQEVKDKASKDNVPMIDVTQYGYFKVLGKGALPENKPI 120

Query: 121 VVKAKLISKIAEKKIKENGGAVVLTA 147
           VVKAKL+SKIAEKKIKENGGAVVLTA
Sbjct: 121 VVKAKLVSKIAEKKIKENGGAVVLTA 146

The following BLAST results are available for this feature:

BLAST of Cp4.1LG09g09960 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R27A3_ARATH	1.4e-72	90.41	60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2	[more]
R27A2_ARATH	5.7e-71	89.04	60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1	[more]
RL27A_BOVIN	4.3e-50	66.44	60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3	[more]
RL27A_MOUSE	4.3e-50	66.44	60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=1 SV=5	[more]
RL27A_RAT	4.3e-50	66.44	60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3	[more]

BLAST of Cp4.1LG09g09960 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQZ7_CUCSA	6.4e-77	98.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G046840 PE=3 SV=1	[more]
B6VC54_VERFO	2.4e-76	95.21	60S ribosomal protein L27A OS=Vernicia fordii GN=RPL27A PE=2 SV=1	[more]
A0A067KGS0_JATCU	2.4e-76	95.21	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11415 PE=3 SV=1	[more]
I3NMK8_HEVBR	3.2e-76	94.52	60S ribosomal protein L27B OS=Hevea brasiliensis GN=RPL27B PE=2 SV=1	[more]
A0A0A0KQ56_CUCSA	9.2e-76	95.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G598710 PE=3 SV=1	[more]

BLAST of Cp4.1LG09g09960 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70600.1	7.7e-74	90.41	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G23290.1	3.2e-72	89.04	Ribosomal protein L18e/L15 superfamily protein	[more]
AT1G12960.1	3.1e-30	54.48	Ribosomal protein L18e/L15 superfamily protein	[more]

BLAST of Cp4.1LG09g09960 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067312\|ref\|XP_008438796.1\|	3.1e-77	99.32	PREDICTED: 60S ribosomal protein L27a-3-like [Cucumis melo]	[more]
gi\|449469566\|ref\|XP_004152490.1\|	9.1e-77	98.63	PREDICTED: 60S ribosomal protein L27a-3 [Cucumis sativus]	[more]
gi\|802650546\|ref\|XP_012079990.1\|	3.5e-76	95.21	PREDICTED: 60S ribosomal protein L27a-3-like [Jatropha curcas]	[more]
gi\|209967449\|gb\|ACJ02353.1\|	3.5e-76	95.21	60S ribosomal protein L27A [Vernicia fordii]	[more]
gi\|313586469\|gb\|ADR71245.1\|	4.5e-76	94.52	60S ribosomal protein L27B [Hevea brasiliensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular
GO:0015934	large ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR021131	Ribosomal_L18e/L15P
IPR001196	Ribosomal_L15_CS

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG09g09960.1	Cp4.1LG09g09960.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001196	Ribosomal protein L15, conserved site	PROSITE	PS00475	RIBOSOMAL_L15	coord: 107..139 scor
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF00828	Ribosomal_L27A	coord: 28..143 score: 8.4
IPR021131	Ribosomal protein L18e/L15P	unknown	SSF52080	Ribosomal proteins L15p and L18e	coord: 6..145 score: 1.05
None	No IPR available	GENE3D	G3DSA:3.100.10.10		coord: 26..144 score: 3.0
None	No IPR available	PANTHER	PTHR11721	60S RIBOSOMAL PROTEIN L27A	coord: 1..146 score: 1.5E
None	No IPR available	PANTHER	PTHR11721:SF6	SUBFAMILY NOT NAMED	coord: 1..146 score: 1.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG09g09960	Cucsa.098720	Cucumber (Gy14) v1	cgycpeB0201
Cp4.1LG09g09960	CmaCh13G008630	Cucurbita maxima (Rimu)	cmacpeB213
Cp4.1LG09g09960	CmaCh18G001880	Cucurbita maxima (Rimu)	cmacpeB416
Cp4.1LG09g09960	CmoCh18G001490	Cucurbita moschata (Rifu)	cmocpeB377
Cp4.1LG09g09960	CmoCh13G008940	Cucurbita moschata (Rifu)	cmocpeB183
Cp4.1LG09g09960	Cla003439	Watermelon (97103) v1	cpewmB033
Cp4.1LG09g09960	Csa1G046840	Cucumber (Chinese Long) v2	cpecuB029
Cp4.1LG09g09960	MELO3C002294	Melon (DHL92) v3.5.1	cpemeB026
Cp4.1LG09g09960	ClCG01G013450	Watermelon (Charleston Gray)	cpewcgB026
Cp4.1LG09g09960	CSPI01G08770	Wild cucumber (PI 183967)	cpecpiB025
Cp4.1LG09g09960	Lsi02G004080	Bottle gourd (USVL1VR-Ls)	cpelsiB026
Cp4.1LG09g09960	MELO3C002294.2	Melon (DHL92) v3.6.1	cpemedB031
Cp4.1LG09g09960	CsaV3_1G008800	Cucumber (Chinese Long) v3	cpecucB0031
Cp4.1LG09g09960	Bhi08G001344	Wax gourd	cpewgoB0046
Cp4.1LG09g09960	CsGy1G008710	Cucumber (Gy14) v2	cgybcpeB018
Cp4.1LG09g09960	Carg07656	Silver-seed gourd	carcpeB1394
Cp4.1LG09g09960	Carg06747	Silver-seed gourd	carcpeB0694

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG09g09960	Cp4.1LG20g02550	Cucurbita pepo (Zucchini)	cpecpeB049

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG09g09960	Cucurbita pepo (Zucchini)	cpecpeB045
Cp4.1LG09g09960	Cucurbita maxima (Rimu)	cmacpeB214
Cp4.1LG09g09960	Cucurbita moschata (Rifu)	cmocpeB184
Cp4.1LG09g09960	Silver-seed gourd	carcpeB1396