Cp4.1LG19g11590 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG19g11590
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionFormate--tetrahydrofolate ligase
LocationCp4.1LG19 : 4862839 .. 4865880 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAGTATGTCACAAATAATTCTATCACTATCTACCTCGACAATTTTATCGTCTCAATTTCGTTGATATAGGTAGCTATATATGTTGAAATGCTGGTGTCTGGGTTGAAAACGTCGAAAACTTTTACTGATTTTTTTACCGGTAAACAAAGAAAGATGAATGACATTCATAAGTCAAATATTGTAACAACTTAAACTCATCACTAGCAAATATTGTCCGTTTTAGCCGTCAACCTCATGGTTTTAAAACGCGTTTACTAAAAAGAGATCTCCACACCTTTATAAGGAATGTTTGGTTCCCCTCTCCAAATGACGTGAGATCTCACAATTCACCCTCTTGGGGCCTAACGTCTTCACTGACAAATCGCCCCGTGTCTGACTCTGATACCATTTGTAACCACACAAACCTACTTCTAATAAATGTTGTCCGCTTTGGCTTGTTACGTATCTCTGTCAGCCTCACGATTTCAAAATGCATCTACCTGGAAGAGGTTTCCACACCCTGTTAAGAAATGTTTCCTTATCATTTTCAATCAACGTGGAATGATGTAGTAACTATTGTTATTATCTTTTTGTTACATCTTACAGCATAGCATAGAAACCAGAAAGCTTTTGGTTTGGTAAAACAGCTACATTTACTGCAACTTCAGCTGCCTTCTTCTTACTCCAATTCATACAACTTCAACTTTTCTTTTGTTTCATTCATCAATGGTTTTCAAGCAGAAATGTCACAAAACATAGACAAAACACAGAGAATCTTTTAGCACAAACAAAACAGGACAAGGACCATGCAAAAAGAATAATGTTTCTGCTGCCAAATCATAAGCCATTGCATGCCCTTCATTATTCATGCACCTTCTCTTCCATATTCCTTTCTCACTCCTCCTCCTCCTCATCATTTGTTCTTATTCTCACTCCTCAAATCAACACTCATAATTATTTGAGTACTCAAAGAAATGTTCTTATCTAGTTTACTTGGGCTGCCTTAAAATTTAACCTTAAAAACAGTCATTTTAAGCTCTTTCAACTTTTTTTCTTCAGTTTTCCATTAATCTTTGATTAAAAAACCTTAAAGATGGATTAGTTTTTAACTTTCCACCAAACCCATGTGAGTGATATTAATTTTCAACCAATGAAAGGAACTTTAAGACATGTCAAATACAACTAAAACTTATGGTTTGGCGTTGACCCATAAAGAGTTGCTGTTCGATCGGATAAGCTCTGGAGAAAAAGAGAAAAATGGCAACACCATCCAAGTTATACAGTTGCTGCTCTCTGTTAATGGCGTTTCTGTTTGCTTATTCCACAGCTGTTCAGTTTAACGACCCTGGTACTCTAAACCCTTTTCCTATTATCCTTCAATTAACAAACTGCCAAATGAAGATCCAAACTTTTCAAAGTCTTTGGTTATTTCCTGTTGATTGTGATCTGAAAACAAAAAAGCTCAATAAAAATTAGATTATCTTCATAAACTGGTTGAAATTGTGTTAGGAAAACGAACAGATCTAAATAGATAGCTATTCGACAGATTGGTATTTGTGGATTCCACTATATGGATGTGCTTGTGCTGTGAATCTTGTCAACTGGGATGTCTCCTTACAAGGCGTGGCTTATGTTGCTAAGGCAACACTGGGACTTGGAATATGTTTGTGGGTGAAGGTGGTAGCAGAGGATTTTGTGAATGGAATTGCAGGGTTTCTCTCTCTAGATTTAAGTGAGAGAGTGGTAAGGGAGAAAACAGGGAGTGGGTTGGTTGTGTCTTCCATGGTTTTACACCTGATAGCAGAATCATCATCATCAATCAGAACAAGAAAAGGGGAAAGAGTGTTTTCAAGATATGTCTCATACGGTAAGGCTAGCTCGATCGTATCAACCTACGATCAATCTTTTTCATTTTAGTCCTTGCACTTTTTATATCTGATTTTCGGGTTTGGAAATATGGTTGCAGGAATGGCATCATTGGTGGCATTTAGTTATGGACTTCCCATTTTCTTCTTCTTGGTTCAAATGGGCAAAATGAACTTCTGAATCATGTTGGACAAATGTTACAAGAGAAACTTCAAAAGGAGGGAGAGAATGTTCTTCAGATCAATGTATTTTCCAATTTATAACGAAAAAACTTGATAAAAGTGATCTATTCTGATGAACAATTATATTGGATGATCTGCCACAGTTATGAATTACGATACACTTTAAAACAACCCATCACAGTAGCTAAAAAGAGAGACAAGGAAAATATTTATTCCTCAAACTTCCTTAAACTTTGGTTGGTGAACAAAAAAGGCATTTACAATTTGCTAAACTAAGTTGATCCAGCAGTGAAAATAAGATAAACACGACGAAACTACAAACTAGAGAAGGTTAGAGGGCGTCGGCCATTTTTCGTATCAGTAACAAGTTCCTACATACAGAAAACTTACCACTTTCCTCTGATTCCAACATTTTAGGCTGAGGGAGTTGCTGGCTTAGACGAGGCATAAGACTTTAAATAATCCACAAAACCTGCAAGGCATGCGCTTTCAGATTGGTCTCTTTCTCCTCTTTCCAAAATATAAAGCTCCAGATCTTTTTCCGAGGAATGATAGGTTTACATGTTCTTCAAATGTTGTAATATAAGGTGGCCTCAGCAACTTGAAGATTCACAGCCATTTCCTCCAGGCGATTGCTCGCGTCGATAATTGAATGTCAGCTCTTCACCAGTGGCTATCTGCACAAATATATGTATACAAATCTTTGTATGAAGATCATCTTTGACATGTTTCCGGAATAAGATTCTTAACGTAGATCGCAAGTTAAGGCTCACTAGGTAATAAAACGAAGACGACGAGTAGAAAATCAACTAAAGATCCTAAACTTGGTTGGTGTATGTATCCCAGAAGTTCCAACCAGTTGCAGAATAATTAGAAACTGAAATATACTCTGACAGTCGTCATATACTATCAAAGCAAGCACTTACATCCCGGTTCGCATACAATCCAATGTGTGAGCGCTGATATTCCATGCTTTCGACAAGGACTTGGTAAGCTACAAGATTTGGTGA

mRNA sequence

ATGGCTACTCTGGAGAAAAAGAGAAAAATGGCAACACCATCCAAGTTATACAGTTGCTGCTCTCTGTTAATGGCGTTTCTGTTTGCTTATTCCACAGCTGTTCAGTTTAACGACCCTGATTGGTATTTGTGGATTCCACTATATGGATGTGCTTGTGCTGTGAATCTTGTCAACTGGGATGTCTCCTTACAAGGCGTGGCTTATGTTGCTAAGGCAACACTGGGACTTGGAATATGTTTGTGGGTGAAGGTGGTAGCAGAGGATTTTGTGAATGGAATTGCAGGGTTTCTCTCTCTAGATTTAAGTGAGAGAGTGGTAAGGGAGAAAACAGGGAGTGGGTTGGTTGTGTCTTCCATGGTTTTACACCTGATAGCAGAATCATCATCATCAATCAGAACAAGAAAAGGGGAAAGAGTGTTTTCAAGATATGTCTCATACGGAATGGCATCATTGGTGGCATTTAGTTATGGACTTCCCATTTTCTTCTTCTTGGTTCAAATGGGCAAAATGAACTTCTGAATCATGTTGGACAAATGTTACAAGAGAAACTTCAAAAGGAGGGAGAGAATGTTCTTCAGATCAATGTATTTTCCAATTTATAACGAAAAAACTTGATAAAAGTGATCTATTCTGATGAACAATTATATTGGATGATCTGCCACAGTTATGAATTACGATACACTTTAAAACAACCCATCACAGTAGCTAAAAAGAGAGACAAGGAAAATATTTATTCCTCAAACTTCCTTAAACTTTGGTTGGTGAACAAAAAAGGCATTTACAATTTGCTAAACTAAGTTGATCCAGCAGTGAAAATAAGATAAACACGACGAAACTACAAACTAGAGAAGGTTAGAGGGCGTCGGCCATTTTTCGTATCAGTAACAAGTTCCTACATACAGAAAACTTACCACTTTCCTCTGATTCCAACATTTTAGGCTGAGGGAGTTGCTGGCTTAGACGAGGCATAAGACTTTAAATAATCCACAAAACCTGCAAGGCATGCGCTTTCAGATTGGTCTCTTTCTCCTCTTTCCAAAATATAAAGCTCCAGATCTTTTTCCGAGGAATGATAGGTTTACATGTTCTTCAAATGTTGTAATATAAGGTGGCCTCAGCAACTTGAAGATTCACAGCCATTTCCTCCAGGCGATTGCTCGCGTCGATAATTGAATGTCAGCTCTTCACCAGTGGCTATCTGCACAAATATATGTATACAAATCTTTGTATGAAGATCATCTTTGACATGTTTCCGGAATAAGATTCTTAACGTAGATCGCAAGTTAAGGCTCACTAGGTAATAAAACGAAGACGACGAGTAGAAAATCAACTAAAGATCCTAAACTTGGTTGGTGTATGTATCCCAGAAGTTCCAACCAGTTGCAGAATAATTAGAAACTGAAATATACTCTGACAGTCGTCATATACTATCAAAGCAAGCACTTACATCCCGGTTCGCATACAATCCAATGTGTGAGCGCTGATATTCCATGCTTTCGACAAGGACTTGGTAAGCTACAAGATTTGGTGA

Coding sequence (CDS)

ATGGCTACTCTGGAGAAAAAGAGAAAAATGGCAACACCATCCAAGTTATACAGTTGCTGCTCTCTGTTAATGGCGTTTCTGTTTGCTTATTCCACAGCTGTTCAGTTTAACGACCCTGATTGGTATTTGTGGATTCCACTATATGGATGTGCTTGTGCTGTGAATCTTGTCAACTGGGATGTCTCCTTACAAGGCGTGGCTTATGTTGCTAAGGCAACACTGGGACTTGGAATATGTTTGTGGGTGAAGGTGGTAGCAGAGGATTTTGTGAATGGAATTGCAGGGTTTCTCTCTCTAGATTTAAGTGAGAGAGTGGTAAGGGAGAAAACAGGGAGTGGGTTGGTTGTGTCTTCCATGGTTTTACACCTGATAGCAGAATCATCATCATCAATCAGAACAAGAAAAGGGGAAAGAGTGTTTTCAAGATATGTCTCATACGGAATGGCATCATTGGTGGCATTTAGTTATGGACTTCCCATTTTCTTCTTCTTGGTTCAAATGGGCAAAATGAACTTCTGA

Protein sequence

MATLEKKRKMATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLVNWDVSLQGVAYVAKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESSSSIRTRKGERVFSRYVSYGMASLVAFSYGLPIFFFLVQMGKMNF
Homology
[Close]
BLAST of Cp4.1LG19g11590 vs. TrEMBL
Match: A0A0A0KI28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G487800 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 7.8e-66
Identity = 129/168 (76.79%), Postives = 147/168 (87.50%), Query Frame = 1 

Query: 10  MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLVNWDVSLQGVAYV 69
           MATPSKLYS CS+LM FLFAYSTAVQFNDPDWYLW+PLYGCACAVNL+ W+VSL+ +  V
Sbjct: 1   MATPSKLYSSCSVLMGFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLLKWNVSLEAMNNV 60

Query: 70  AKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESSS 129
           AKA +G+GICLWVKVVAED++NGIAGFLSLDLSERVVREKTGSGLVV SM+LHLIA SSS
Sbjct: 61  AKAAMGVGICLWVKVVAEDYMNGIAGFLSLDLSERVVREKTGSGLVVCSMILHLIAASSS 120

Query: 130 SIRTR-----KGERVFSRYVSYGMASLVAFSYGLPIFFFLVQMGKMNF 173
           S + R     K +RVF R+++YG+A LVAFSYGLPIFFFLV+ GKM F
Sbjct: 121 SPKLRRTSKSKSKRVFPRHLTYGIACLVAFSYGLPIFFFLVKKGKMKF 168

[Close]
BLAST of Cp4.1LG19g11590 vs. TrEMBL
Match: A0A0D2THL9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G033200 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.0e-45
Identity = 95/166 (57.23%), Postives = 125/166 (75.30%), Query Frame = 1 

Query: 10  MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLVNWDVSLQG-VAY 69
           MA P  L++CCSLLMA +F +S++VQ NDPDWY W PLY CAC VNL+NW +S +G + +
Sbjct: 1   MAKPRNLFTCCSLLMAIMFGFSSSVQLNDPDWYFWFPLYACACIVNLLNWRISAKGYIKH 60

Query: 70  VAKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESS 129
           VAK  L LG+ L++KVV E +V  IAG  SLDL+ERVVREKTGS LV+ SMVLHL+  S 
Sbjct: 61  VAKVALCLGVLLFIKVVVEGYVRKIAGLWSLDLAERVVREKTGSLLVIISMVLHLVCLSE 120

Query: 130 S-SIRTRKGERVFSR-YVSYGMASLVAFSYGLPIFFFLVQMGKMNF 173
           +  ++ RK  ++  R +V+YGMA LVAFSYGLP  FF++Q G+++F
Sbjct: 121 ALDLKQRKTRKIVGRGFVAYGMAGLVAFSYGLPFVFFVIQKGELSF 166

[Close]
BLAST of Cp4.1LG19g11590 vs. TrEMBL
Match: B9HEL5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12140g PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.4e-44
Identity = 96/157 (61.15%), Postives = 112/157 (71.34%), Query Frame = 1 

Query: 17  YSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLVNWDVSLQGVAYVAKATLGL 76
           +S CSLLMA LF YS +VQ NDPDWY W+PLY CACAVNLVNW +S   +  +AK TL  
Sbjct: 7   FSLCSLLMAALFGYSASVQLNDPDWYFWLPLYACACAVNLVNWAISNTTIRQIAKVTLWF 66

Query: 77  GICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESS-SSIRTRK 136
              L+VKVV ED+VNG AGF SLD+SERVVREKTGSGLV+ SM+LHL A S     +  +
Sbjct: 67  AALLFVKVVIEDYVNGTAGFWSLDVSERVVREKTGSGLVLISMILHLEASSEPKHSKMPR 126

Query: 137 GERVFSRYVSYGMASLVAFSYGLPIFFFLVQMGKMNF 173
             R F R V YGMASLV FS GLP  FF++  G+M F
Sbjct: 127 KRREFPRSVEYGMASLVIFSLGLPFVFFVIHDGEMKF 163

[Close]
BLAST of Cp4.1LG19g11590 vs. TrEMBL
Match: A0A0D2V109_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G033200 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.2e-43
Identity = 95/174 (54.60%), Postives = 125/174 (71.84%), Query Frame = 1 

Query: 10  MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLVNWDVSLQG-VAY 69
           MA P  L++CCSLLMA +F +S++VQ NDPDWY W PLY CAC VNL+NW +S +G + +
Sbjct: 1   MAKPRNLFTCCSLLMAIMFGFSSSVQLNDPDWYFWFPLYACACIVNLLNWRISAKGYIKH 60

Query: 70  VAKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESS 129
           VAK  L LG+ L++KVV E +V  IAG  SLDL+ERVVREKTGS LV+ SMVLHL+  S 
Sbjct: 61  VAKVALCLGVLLFIKVVVEGYVRKIAGLWSLDLAERVVREKTGSLLVIISMVLHLVCLSE 120

Query: 130 S-SIRTRKGERVFSR-YVSY--------GMASLVAFSYGLPIFFFLVQMGKMNF 173
           +  ++ RK  ++  R +V+Y        GMA LVAFSYGLP  FF++Q G+++F
Sbjct: 121 ALDLKQRKTRKIVGRGFVAYAFEFNSYTGMAGLVAFSYGLPFVFFVIQKGELSF 174

[Close]
BLAST of Cp4.1LG19g11590 vs. TrEMBL
Match: M5VUK2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022236mg PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.7e-42
Identity = 95/164 (57.93%), Postives = 117/164 (71.34%), Query Frame = 1 

Query: 10  MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLVNWDVSLQGVAYV 69
           MATP+KL   CSLLMA LF YS +VQ +D DWY W  LYG AC VNLVNW +S + + +V
Sbjct: 1   MATPTKLNILCSLLMASLFGYSASVQLDDSDWYFWFSLYGGACVVNLVNWAISSKAIKHV 60

Query: 70  AKATLGLGICLWVKVVAED-FVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESS 129
           A+  L LGI L+++V+AE   V+G++GF SLDLSERV+REK GSGLV+ SM+L L A SS
Sbjct: 61  AEGALWLGIFLFIRVIAESTLVDGVSGFWSLDLSERVIREKIGSGLVIISMILQLTA-SS 120

Query: 130 SSIRTRKGERVFSRYVSYGMASLVAFSYGLPIFFFLVQMGKMNF 173
                 K +  F RYV YGMA LV FSYGLP  FF+VQ G++ F
Sbjct: 121 LEAPPHKQQNKFPRYVEYGMAILVGFSYGLPFVFFVVQKGELKF 163

[Close]
BLAST of Cp4.1LG19g11590 vs. TAIR10
Match: AT2G23755.1 (AT2G23755.1 unknown protein)

HSP 1 Score: 153.3 bits (386), Expect = 1.4e-37
Identity = 82/161 (50.93%), Postives = 105/161 (65.22%), Query Frame = 1 

Query: 10  MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLVNWDVSLQGVAYV 69
           MA P  L+  CSLLMAFLFAYS +VQ NDPDWY W PLY  AC VNL+N+   ++    +
Sbjct: 1   MAKPRNLFRVCSLLMAFLFAYSASVQLNDPDWYFWFPLYTLACVVNLINYRRRIK--LMM 60

Query: 70  AKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESSS 129
            +  L LG+ L VKV+AED +    G LSLDL+ RVVREK GSGLV++SMVL L A SSS
Sbjct: 61  MRTALSLGVFLLVKVIAEDVITEKVGVLSLDLTHRVVREKIGSGLVIASMVLQLQASSSS 120

Query: 130 SIRTRKGERVFSRYVSYGMASLVAFSYGLPIFFFLVQMGKM 171
                      S+ + +GM + V F YGLP +FF ++ G++
Sbjct: 121 -----------SKTIDFGMVATVIFGYGLPFWFFTIEKGEI 148

[Close]
BLAST of Cp4.1LG19g11590 vs. NCBI nr
Match: gi|449448390|ref|XP_004141949.1| (PREDICTED: transmembrane protein 220 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 1.1e-65
Identity = 129/168 (76.79%), Postives = 147/168 (87.50%), Query Frame = 1 

Query: 10  MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLVNWDVSLQGVAYV 69
           MATPSKLYS CS+LM FLFAYSTAVQFNDPDWYLW+PLYGCACAVNL+ W+VSL+ +  V
Sbjct: 1   MATPSKLYSSCSVLMGFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLLKWNVSLEAMNNV 60

Query: 70  AKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESSS 129
           AKA +G+GICLWVKVVAED++NGIAGFLSLDLSERVVREKTGSGLVV SM+LHLIA SSS
Sbjct: 61  AKAAMGVGICLWVKVVAEDYMNGIAGFLSLDLSERVVREKTGSGLVVCSMILHLIAASSS 120

Query: 130 SIRTR-----KGERVFSRYVSYGMASLVAFSYGLPIFFFLVQMGKMNF 173
           S + R     K +RVF R+++YG+A LVAFSYGLPIFFFLV+ GKM F
Sbjct: 121 SPKLRRTSKSKSKRVFPRHLTYGIACLVAFSYGLPIFFFLVKKGKMKF 168

[Close]
BLAST of Cp4.1LG19g11590 vs. NCBI nr
Match: gi|659079284|ref|XP_008440175.1| (PREDICTED: transmembrane protein 220 [Cucumis melo])

HSP 1 Score: 256.5 bits (654), Expect = 3.2e-65
Identity = 128/166 (77.11%), Postives = 146/166 (87.95%), Query Frame = 1 

Query: 10  MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLVNWDVSLQGVAYV 69
           MA PSKLYS CS+LM FLFAYSTAVQFNDPDWYLW+PLYGCACAVNL+ W+VSL+ +  V
Sbjct: 1   MAIPSKLYSSCSVLMGFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLLKWNVSLEAMNNV 60

Query: 70  AKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESSS 129
           AKA +G+GICLWVKVVAED++NGIAGFLSLDLSERVVREKTGSGLVV SM+LHLIA SSS
Sbjct: 61  AKAAMGVGICLWVKVVAEDYMNGIAGFLSLDLSERVVREKTGSGLVVCSMILHLIAASSS 120

Query: 130 SIR---TRKGERVFSRYVSYGMASLVAFSYGLPIFFFLVQMGKMNF 173
           S +   T K +RVF R+++YG+A LVAFSYGLPIFFFLV+ GKM F
Sbjct: 121 SPKLRITSKSKRVFPRHLTYGIACLVAFSYGLPIFFFLVKKGKMKF 166

[Close]
BLAST of Cp4.1LG19g11590 vs. NCBI nr
Match: gi|823251618|ref|XP_012458450.1| (PREDICTED: uncharacterized protein LOC105779217 isoform X2 [Gossypium raimondii])

HSP 1 Score: 190.3 bits (482), Expect = 2.9e-45
Identity = 95/166 (57.23%), Postives = 125/166 (75.30%), Query Frame = 1 

Query: 10  MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLVNWDVSLQG-VAY 69
           MA P  L++CCSLLMA +F +S++VQ NDPDWY W PLY CAC VNL+NW +S +G + +
Sbjct: 1   MAKPRNLFTCCSLLMAIMFGFSSSVQLNDPDWYFWFPLYACACIVNLLNWRISAKGYIKH 60

Query: 70  VAKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESS 129
           VAK  L LG+ L++KVV E +V  IAG  SLDL+ERVVREKTGS LV+ SMVLHL+  S 
Sbjct: 61  VAKVALCLGVLLFIKVVVEGYVRKIAGLWSLDLAERVVREKTGSLLVIISMVLHLVCLSE 120

Query: 130 S-SIRTRKGERVFSR-YVSYGMASLVAFSYGLPIFFFLVQMGKMNF 173
           +  ++ RK  ++  R +V+YGMA LVAFSYGLP  FF++Q G+++F
Sbjct: 121 ALDLKQRKTRKIVGRGFVAYGMAGLVAFSYGLPFVFFVIQKGELSF 166

[Close]
BLAST of Cp4.1LG19g11590 vs. NCBI nr
Match: gi|645272874|ref|XP_008241604.1| (PREDICTED: transmembrane protein 220 [Prunus mume])

HSP 1 Score: 187.6 bits (475), Expect = 1.8e-44
Identity = 98/164 (59.76%), Postives = 121/164 (73.78%), Query Frame = 1 

Query: 10  MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLVNWDVSLQGVAYV 69
           MATP+KL + CSLLMA LFAYS +VQ NDPDWY W  LYG AC VNLVNW +S + + +V
Sbjct: 1   MATPTKLNTLCSLLMASLFAYSASVQLNDPDWYFWFSLYGGACVVNLVNWAISSKAIKHV 60

Query: 70  AKATLGLGICLWVKVVAED-FVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESS 129
           A+ TL LGI L+++V+AE   V+G++GF SLDLSERV+REK GSGLV+ SM+L L A SS
Sbjct: 61  AEGTLWLGIFLFIRVIAESTLVDGVSGFWSLDLSERVIREKIGSGLVIISMILQLTA-SS 120

Query: 130 SSIRTRKGERVFSRYVSYGMASLVAFSYGLPIFFFLVQMGKMNF 173
                 K +  F R+V YGMA LV FSYGLP  FF+VQ G++ F
Sbjct: 121 LEAPPHKQQSKFPRFVEYGMAILVGFSYGLPFVFFVVQKGELKF 163

[Close]
BLAST of Cp4.1LG19g11590 vs. NCBI nr
Match: gi|224096884|ref|XP_002310773.1| (hypothetical protein POPTR_0007s12140g [Populus trichocarpa])

HSP 1 Score: 185.3 bits (469), Expect = 9.2e-44
Identity = 96/157 (61.15%), Postives = 112/157 (71.34%), Query Frame = 1 

Query: 17  YSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLVNWDVSLQGVAYVAKATLGL 76
           +S CSLLMA LF YS +VQ NDPDWY W+PLY CACAVNLVNW +S   +  +AK TL  
Sbjct: 7   FSLCSLLMAALFGYSASVQLNDPDWYFWLPLYACACAVNLVNWAISNTTIRQIAKVTLWF 66

Query: 77  GICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESS-SSIRTRK 136
              L+VKVV ED+VNG AGF SLD+SERVVREKTGSGLV+ SM+LHL A S     +  +
Sbjct: 67  AALLFVKVVIEDYVNGTAGFWSLDVSERVVREKTGSGLVLISMILHLEASSEPKHSKMPR 126

Query: 137 GERVFSRYVSYGMASLVAFSYGLPIFFFLVQMGKMNF 173
             R F R V YGMASLV FS GLP  FF++  G+M F
Sbjct: 127 KRREFPRSVEYGMASLVIFSLGLPFVFFVIHDGEMKF 163

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g11590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG19g11590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KI28_CUCSA7.8e-6676.79Uncharacterized protein OS=Cucumis sativus GN=Csa_6G487800 PE=4 SV=1[more]
A0A0D2THL9_GOSRA2.0e-4557.23Uncharacterized protein OS=Gossypium raimondii GN=B456_012G033200 PE=4 SV=1[more]
B9HEL5_POPTR6.4e-4461.15Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12140g PE=4 SV=1[more]
A0A0D2V109_GOSRA3.2e-4354.60Uncharacterized protein OS=Gossypium raimondii GN=B456_012G033200 PE=4 SV=1[more]
M5VUK2_PRUPE2.7e-4257.93Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022236mg PE=4 SV=1[more]
BLAST of Cp4.1LG19g11590 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G23755.11.4e-3750.93 unknown protein[more]
BLAST of Cp4.1LG19g11590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449448390|ref|XP_004141949.1|1.1e-6576.79PREDICTED: transmembrane protein 220 [Cucumis sativus][more]
gi|659079284|ref|XP_008440175.1|3.2e-6577.11PREDICTED: transmembrane protein 220 [Cucumis melo][more]
gi|823251618|ref|XP_012458450.1|2.9e-4557.23PREDICTED: uncharacterized protein LOC105779217 isoform X2 [Gossypium raimondii][more]
gi|645272874|ref|XP_008241604.1|1.8e-4459.76PREDICTED: transmembrane protein 220 [Prunus mume][more]
gi|224096884|ref|XP_002310773.1|9.2e-4461.15hypothetical protein POPTR_0007s12140g [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g11590.1Cp4.1LG19g11590.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34262FAMILY NOT NAMEDcoord: 10..172
score: 1.2
NoneNo IPR availablePANTHERPTHR34262:SF1TRANSMEMBRANE PROTEIN 220coord: 10..172
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG19g11590Cucsa.101860Cucumber (Gy14) v1cgycpeB0220
Cp4.1LG19g11590CmaCh07G007430Cucurbita maxima (Rimu)cmacpeB880
Cp4.1LG19g11590CmoCh07G007640Cucurbita moschata (Rifu)cmocpeB817
Cp4.1LG19g11590Csa6G487800Cucumber (Chinese Long) v2cpecuB503
Cp4.1LG19g11590MELO3C007502Melon (DHL92) v3.5.1cpemeB449
Cp4.1LG19g11590ClCG01G016310Watermelon (Charleston Gray)cpewcgB425
Cp4.1LG19g11590CSPI06G27480Wild cucumber (PI 183967)cpecpiB503
Cp4.1LG19g11590MELO3C007502.2Melon (DHL92) v3.6.1cpemedB531
Cp4.1LG19g11590CsaV3_6G042630Cucumber (Chinese Long) v3cpecucB0618
Cp4.1LG19g11590Bhi03G001510Wax gourdcpewgoB0609
Cp4.1LG19g11590CsGy6G026840Cucumber (Gy14) v2cgybcpeB810
Cp4.1LG19g11590Carg05251Silver-seed gourdcarcpeB1135
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG19g11590Watermelon (Charleston Gray)cpewcgB428
Cp4.1LG19g11590Watermelon (Charleston Gray)cpewcgB429
Cp4.1LG19g11590Watermelon (97103) v1cpewmB482
Cp4.1LG19g11590Watermelon (97103) v1cpewmB500
Cp4.1LG19g11590Watermelon (97103) v1cpewmB501
Cp4.1LG19g11590Cucumber (Gy14) v2cgybcpeB219
Cp4.1LG19g11590Cucumber (Gy14) v2cgybcpeB221
Cp4.1LG19g11590Melon (DHL92) v3.6.1cpemedB515
Cp4.1LG19g11590Melon (DHL92) v3.6.1cpemedB519
Cp4.1LG19g11590Silver-seed gourdcarcpeB0264
Cp4.1LG19g11590Silver-seed gourdcarcpeB0563
Cp4.1LG19g11590Cucumber (Chinese Long) v3cpecucB0592
Cp4.1LG19g11590Cucumber (Chinese Long) v3cpecucB0593
Cp4.1LG19g11590Wax gourdcpewgoB0590
Cp4.1LG19g11590Cucurbita pepo (Zucchini)cpecpeB076
Cp4.1LG19g11590Cucurbita pepo (Zucchini)cpecpeB119
Cp4.1LG19g11590Cucurbita pepo (Zucchini)cpecpeB262
Cp4.1LG19g11590Cucurbita pepo (Zucchini)cpecpeB292
Cp4.1LG19g11590Cucurbita pepo (Zucchini)cpecpeB295
Cp4.1LG19g11590Cucurbita pepo (Zucchini)cpecpeB414
Cp4.1LG19g11590Cucurbita pepo (Zucchini)cpecpeB422
Cp4.1LG19g11590Cucurbita pepo (Zucchini)cpecpeB426
Cp4.1LG19g11590Cucumber (Gy14) v1cgycpeB0973
Cp4.1LG19g11590Cucurbita maxima (Rimu)cmacpeB532
Cp4.1LG19g11590Cucurbita maxima (Rimu)cmacpeB671
Cp4.1LG19g11590Cucurbita maxima (Rimu)cmacpeB777
Cp4.1LG19g11590Cucurbita moschata (Rifu)cmocpeB490
Cp4.1LG19g11590Cucurbita moschata (Rifu)cmocpeB624
Cp4.1LG19g11590Wild cucumber (PI 183967)cpecpiB480
Cp4.1LG19g11590Cucumber (Chinese Long) v2cpecuB479
Cp4.1LG19g11590Bottle gourd (USVL1VR-Ls)cpelsiB396