CmoCh07G007640 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G007640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Formate--tetrahydrofolate ligase
Location	Cmo_Chr07 : 3459330 .. 3460319 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTTGACCCATAAAGAGTTGCTGTTCGATCGGATAAGCTCTGGAGAAAAAGAGAAATGGCAACACCATCCAAGTTATACAGTTGCTGCTCTCTGTTAATGGCGTTTCTGTTTGCTTATTCCACAGCTGTTCAGTTTAACGATCCTGGTACTCCAAACCCTTTTCTTATTATCCTTCAATTAACAAACTGCCAAATGAAGATCCAAACTTTTCAATTTCTTAGGTTACTTCCTGTTGATGATGATCTGAAAACAAAAAAGCTCAATAAAAATTAGATTATCTTCATAAACTGGTTGAAATTGTGTTAGGAAAACGAACAGATCTAAATAGATAGCTCTATTCGACAGATTGGTATTTGTGGATTCCACTATATGGATGTGCTTGTGCTGTGAATCTTCTCAACTGGGATGTGTCCTTACAAGGCGTGGCTTATATTGCTAAGGCAACACTGGGACTTGGGATATGTTTGTGGGTGAAGGTGGTAGCAGAGGATTTTGTGAATGGAATTGCAGGGTTTCTCTCTCTAGATTTAAGTGAGAGAGTGGTAAGGGAGAAAACAGGAAGTGGGTTGGTTGTGTCTTCCATGGTTTTACACCTGATAGCAGAATCATCATCATCAATCAGAACAAGAAAAGGGGAAAGAGTGTTTTCAAGATATGTCTCGTACGGTAAGGCTAGCTCGATCGTATCAACTTTTTCATTTTAGTCCTTGCACTTTTTATATCTGATTTTCGGGTCTGGAAATATGGTTGCAGGAATGGCATCGTTGGTGGCATTTAGTTATGGACTTCCCATTTTCTTCTTCTTGATTCAAATGGGCAAAATGAACTTCTGAATCATGTTGGACAAATGTTACAAGAGAAACTTCAAAAGGAGGGAGAGAATGTTCTTCAGATCAATGTATTTTCCAATTTACAACGAAAAAACTTGATAAAAGTGATCTATTCTGATGAACAATTATATTGGATGATCTGCCACAGTTATGAATTAC

mRNA sequence

CGTTGACCCATAAAGAGTTGCTGTTCGATCGGATAAGCTCTGGAGAAAAAGAGAAATGGCAACACCATCCAAGTTATACAGTTGCTGCTCTCTGTTAATGGCGTTTCTGTTTGCTTATTCCACAGCTGTTCAGTTTAACGATCCTGATTGGTATTTGTGGATTCCACTATATGGATGTGCTTGTGCTGTGAATCTTCTCAACTGGGATGTGTCCTTACAAGGCGTGGCTTATATTGCTAAGGCAACACTGGGACTTGGGATATGTTTGTGGGTGAAGGTGGTAGCAGAGGATTTTGTGAATGGAATTGCAGGGTTTCTCTCTCTAGATTTAAGTGAGAGAGTGGTAAGGGAGAAAACAGGAAGTGGGTTGGTTGTGTCTTCCATGGTTTTACACCTGATAGCAGAATCATCATCATCAATCAGAACAAGAAAAGGGGAAAGAGTGTTTTCAAGATATGTCTCGTACGGAATGGCATCGTTGGTGGCATTTAGTTATGGACTTCCCATTTTCTTCTTCTTGATTCAAATGGGCAAAATGAACTTCTGAATCATGTTGGACAAATGTTACAAGAGAAACTTCAAAAGGAGGGAGAGAATGTTCTTCAGATCAATGTATTTTCCAATTTACAACGAAAAAACTTGATAAAAGTGATCTATTCTGATGAACAATTATATTGGATGATCTGCCACAGTTATGAATTAC

Coding sequence (CDS)

ATGGCAACACCATCCAAGTTATACAGTTGCTGCTCTCTGTTAATGGCGTTTCTGTTTGCTTATTCCACAGCTGTTCAGTTTAACGATCCTGATTGGTATTTGTGGATTCCACTATATGGATGTGCTTGTGCTGTGAATCTTCTCAACTGGGATGTGTCCTTACAAGGCGTGGCTTATATTGCTAAGGCAACACTGGGACTTGGGATATGTTTGTGGGTGAAGGTGGTAGCAGAGGATTTTGTGAATGGAATTGCAGGGTTTCTCTCTCTAGATTTAAGTGAGAGAGTGGTAAGGGAGAAAACAGGAAGTGGGTTGGTTGTGTCTTCCATGGTTTTACACCTGATAGCAGAATCATCATCATCAATCAGAACAAGAAAAGGGGAAAGAGTGTTTTCAAGATATGTCTCGTACGGAATGGCATCGTTGGTGGCATTTAGTTATGGACTTCCCATTTTCTTCTTCTTGATTCAAATGGGCAAAATGAACTTCTGA

Homology

[Close]

BLAST of CmoCh07G007640 vs. TrEMBL
Match: A0A0A0KI28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G487800 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 5.6e-66
Identity = 128/168 (76.19%), Postives = 147/168 (87.50%), Query Frame = 1


Query: 1   MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLLNWDVSLQGVAYI 60
           MATPSKLYS CS+LM FLFAYSTAVQFNDPDWYLW+PLYGCACAVNLL W+VSL+ +  +
Sbjct: 1   MATPSKLYSSCSVLMGFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLLKWNVSLEAMNNV 60

Query: 61  AKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESSS 120
           AKA +G+GICLWVKVVAED++NGIAGFLSLDLSERVVREKTGSGLVV SM+LHLIA SSS
Sbjct: 61  AKAAMGVGICLWVKVVAEDYMNGIAGFLSLDLSERVVREKTGSGLVVCSMILHLIAASSS 120

Query: 121 SIRTR-----KGERVFSRYVSYGMASLVAFSYGLPIFFFLIQMGKMNF 164
           S + R     K +RVF R+++YG+A LVAFSYGLPIFFFL++ GKM F
Sbjct: 121 SPKLRRTSKSKSKRVFPRHLTYGIACLVAFSYGLPIFFFLVKKGKMKF 168

[Close]

BLAST of CmoCh07G007640 vs. TrEMBL
Match: A0A0D2THL9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G033200 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 8.5e-46
Identity = 96/166 (57.83%), Postives = 125/166 (75.30%), Query Frame = 1


Query: 1   MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLLNWDVSLQG-VAY 60
           MA P  L++CCSLLMA +F +S++VQ NDPDWY W PLY CAC VNLLNW +S +G + +
Sbjct: 1   MAKPRNLFTCCSLLMAIMFGFSSSVQLNDPDWYFWFPLYACACIVNLLNWRISAKGYIKH 60

Query: 61  IAKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESS 120
           +AK  L LG+ L++KVV E +V  IAG  SLDL+ERVVREKTGS LV+ SMVLHL+  S 
Sbjct: 61  VAKVALCLGVLLFIKVVVEGYVRKIAGLWSLDLAERVVREKTGSLLVIISMVLHLVCLSE 120

Query: 121 S-SIRTRKGERVFSR-YVSYGMASLVAFSYGLPIFFFLIQMGKMNF 164
           +  ++ RK  ++  R +V+YGMA LVAFSYGLP  FF+IQ G+++F
Sbjct: 121 ALDLKQRKTRKIVGRGFVAYGMAGLVAFSYGLPFVFFVIQKGELSF 166

[Close]

BLAST of CmoCh07G007640 vs. TrEMBL
Match: B9HEL5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12140g PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.0e-43
Identity = 97/157 (61.78%), Postives = 112/157 (71.34%), Query Frame = 1


Query: 8   YSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLLNWDVSLQGVAYIAKATLGL 67
           +S CSLLMA LF YS +VQ NDPDWY W+PLY CACAVNL+NW +S   +  IAK TL  
Sbjct: 7   FSLCSLLMAALFGYSASVQLNDPDWYFWLPLYACACAVNLVNWAISNTTIRQIAKVTLWF 66

Query: 68  GICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESS-SSIRTRK 127
              L+VKVV ED+VNG AGF SLD+SERVVREKTGSGLV+ SM+LHL A S     +  +
Sbjct: 67  AALLFVKVVIEDYVNGTAGFWSLDVSERVVREKTGSGLVLISMILHLEASSEPKHSKMPR 126

Query: 128 GERVFSRYVSYGMASLVAFSYGLPIFFFLIQMGKMNF 164
             R F R V YGMASLV FS GLP  FF+I  G+M F
Sbjct: 127 KRREFPRSVEYGMASLVIFSLGLPFVFFVIHDGEMKF 163

[Close]

BLAST of CmoCh07G007640 vs. TrEMBL
Match: A0A0D2V109_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G033200 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.4e-43
Identity = 96/174 (55.17%), Postives = 125/174 (71.84%), Query Frame = 1


Query: 1   MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLLNWDVSLQG-VAY 60
           MA P  L++CCSLLMA +F +S++VQ NDPDWY W PLY CAC VNLLNW +S +G + +
Sbjct: 1   MAKPRNLFTCCSLLMAIMFGFSSSVQLNDPDWYFWFPLYACACIVNLLNWRISAKGYIKH 60

Query: 61  IAKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESS 120
           +AK  L LG+ L++KVV E +V  IAG  SLDL+ERVVREKTGS LV+ SMVLHL+  S 
Sbjct: 61  VAKVALCLGVLLFIKVVVEGYVRKIAGLWSLDLAERVVREKTGSLLVIISMVLHLVCLSE 120

Query: 121 S-SIRTRKGERVFSR-YVSY--------GMASLVAFSYGLPIFFFLIQMGKMNF 164
           +  ++ RK  ++  R +V+Y        GMA LVAFSYGLP  FF+IQ G+++F
Sbjct: 121 ALDLKQRKTRKIVGRGFVAYAFEFNSYTGMAGLVAFSYGLPFVFFVIQKGELSF 174

[Close]

BLAST of CmoCh07G007640 vs. TrEMBL
Match: A0A0B0PLS9_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_06641 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 4.3e-42
Identity = 93/166 (56.02%), Postives = 118/166 (71.08%), Query Frame = 1


Query: 1   MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLLNWDVSLQG-VAY 60
           MA P  L++CCSLLMA +F +S++VQ NDP WY W  LY CAC VNLLNW  S +G + +
Sbjct: 1   MAKPRNLFTCCSLLMAIMFGFSSSVQLNDPVWYFWFSLYACACIVNLLNWRTSAKGYIKH 60

Query: 61  IAKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESS 120
           +A+  L LG+ L++KVV E +V  IAG  SLDL+ERVVREKTGS L + SMVLHL+  S 
Sbjct: 61  VAQVALCLGVLLFIKVVVEGYVRKIAGLWSLDLAERVVREKTGSLLAIISMVLHLVCLSE 120

Query: 121 S-SIRTRKGERVFSR-YVSYGMASLVAFSYGLPIFFFLIQMGKMNF 164
              ++ RK  ++  R  V+YGMA LVAFSYGLP  FF+IQ G+M F
Sbjct: 121 PVDVKQRKKRKIVGRGVVAYGMAGLVAFSYGLPFVFFVIQNGEMRF 166

[Close]

BLAST of CmoCh07G007640 vs. TAIR10
Match: AT2G23755.1 (AT2G23755.1 unknown protein)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-37
Identity = 83/161 (51.55%), Postives = 105/161 (65.22%), Query Frame = 1


Query: 1   MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLLNWDVSLQGVAYI 60
           MA P  L+  CSLLMAFLFAYS +VQ NDPDWY W PLY  AC VNL+N+   ++    +
Sbjct: 1   MAKPRNLFRVCSLLMAFLFAYSASVQLNDPDWYFWFPLYTLACVVNLINYRRRIK--LMM 60

Query: 61  AKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESSS 120
            +  L LG+ L VKV+AED +    G LSLDL+ RVVREK GSGLV++SMVL L A SSS
Sbjct: 61  MRTALSLGVFLLVKVIAEDVITEKVGVLSLDLTHRVVREKIGSGLVIASMVLQLQASSSS 120

Query: 121 SIRTRKGERVFSRYVSYGMASLVAFSYGLPIFFFLIQMGKM 162
                      S+ + +GM + V F YGLP +FF I+ G++
Sbjct: 121 -----------SKTIDFGMVATVIFGYGLPFWFFTIEKGEI 148

[Close]

BLAST of CmoCh07G007640 vs. NCBI nr
Match: gi|449448390|ref|XP_004141949.1| (PREDICTED: transmembrane protein 220 [Cucumis sativus])

HSP 1 Score: 258.5 bits (659), Expect = 8.1e-66
Identity = 128/168 (76.19%), Postives = 147/168 (87.50%), Query Frame = 1


Query: 1   MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLLNWDVSLQGVAYI 60
           MATPSKLYS CS+LM FLFAYSTAVQFNDPDWYLW+PLYGCACAVNLL W+VSL+ +  +
Sbjct: 1   MATPSKLYSSCSVLMGFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLLKWNVSLEAMNNV 60

Query: 61  AKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESSS 120
           AKA +G+GICLWVKVVAED++NGIAGFLSLDLSERVVREKTGSGLVV SM+LHLIA SSS
Sbjct: 61  AKAAMGVGICLWVKVVAEDYMNGIAGFLSLDLSERVVREKTGSGLVVCSMILHLIAASSS 120

Query: 121 SIRTR-----KGERVFSRYVSYGMASLVAFSYGLPIFFFLIQMGKMNF 164
           S + R     K +RVF R+++YG+A LVAFSYGLPIFFFL++ GKM F
Sbjct: 121 SPKLRRTSKSKSKRVFPRHLTYGIACLVAFSYGLPIFFFLVKKGKMKF 168

[Close]

BLAST of CmoCh07G007640 vs. NCBI nr
Match: gi|659079284|ref|XP_008440175.1| (PREDICTED: transmembrane protein 220 [Cucumis melo])

HSP 1 Score: 256.9 bits (655), Expect = 2.4e-65
Identity = 127/166 (76.51%), Postives = 146/166 (87.95%), Query Frame = 1


Query: 1   MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLLNWDVSLQGVAYI 60
           MA PSKLYS CS+LM FLFAYSTAVQFNDPDWYLW+PLYGCACAVNLL W+VSL+ +  +
Sbjct: 1   MAIPSKLYSSCSVLMGFLFAYSTAVQFNDPDWYLWVPLYGCACAVNLLKWNVSLEAMNNV 60

Query: 61  AKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESSS 120
           AKA +G+GICLWVKVVAED++NGIAGFLSLDLSERVVREKTGSGLVV SM+LHLIA SSS
Sbjct: 61  AKAAMGVGICLWVKVVAEDYMNGIAGFLSLDLSERVVREKTGSGLVVCSMILHLIAASSS 120

Query: 121 SIR---TRKGERVFSRYVSYGMASLVAFSYGLPIFFFLIQMGKMNF 164
           S +   T K +RVF R+++YG+A LVAFSYGLPIFFFL++ GKM F
Sbjct: 121 SPKLRITSKSKRVFPRHLTYGIACLVAFSYGLPIFFFLVKKGKMKF 166

[Close]

BLAST of CmoCh07G007640 vs. NCBI nr
Match: gi|823251618|ref|XP_012458450.1| (PREDICTED: uncharacterized protein LOC105779217 isoform X2 [Gossypium raimondii])

HSP 1 Score: 191.4 bits (485), Expect = 1.2e-45
Identity = 96/166 (57.83%), Postives = 125/166 (75.30%), Query Frame = 1


Query: 1   MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLLNWDVSLQG-VAY 60
           MA P  L++CCSLLMA +F +S++VQ NDPDWY W PLY CAC VNLLNW +S +G + +
Sbjct: 1   MAKPRNLFTCCSLLMAIMFGFSSSVQLNDPDWYFWFPLYACACIVNLLNWRISAKGYIKH 60

Query: 61  IAKATLGLGICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESS 120
           +AK  L LG+ L++KVV E +V  IAG  SLDL+ERVVREKTGS LV+ SMVLHL+  S 
Sbjct: 61  VAKVALCLGVLLFIKVVVEGYVRKIAGLWSLDLAERVVREKTGSLLVIISMVLHLVCLSE 120

Query: 121 S-SIRTRKGERVFSR-YVSYGMASLVAFSYGLPIFFFLIQMGKMNF 164
           +  ++ RK  ++  R +V+YGMA LVAFSYGLP  FF+IQ G+++F
Sbjct: 121 ALDLKQRKTRKIVGRGFVAYGMAGLVAFSYGLPFVFFVIQKGELSF 166

[Close]

BLAST of CmoCh07G007640 vs. NCBI nr
Match: gi|645272874|ref|XP_008241604.1| (PREDICTED: transmembrane protein 220 [Prunus mume])

HSP 1 Score: 185.7 bits (470), Expect = 6.7e-44
Identity = 95/164 (57.93%), Postives = 121/164 (73.78%), Query Frame = 1


Query: 1   MATPSKLYSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLLNWDVSLQGVAYI 60
           MATP+KL + CSLLMA LFAYS +VQ NDPDWY W  LYG AC VNL+NW +S + + ++
Sbjct: 1   MATPTKLNTLCSLLMASLFAYSASVQLNDPDWYFWFSLYGGACVVNLVNWAISSKAIKHV 60

Query: 61  AKATLGLGICLWVKVVAED-FVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESS 120
           A+ TL LGI L+++V+AE   V+G++GF SLDLSERV+REK GSGLV+ SM+L L A SS
Sbjct: 61  AEGTLWLGIFLFIRVIAESTLVDGVSGFWSLDLSERVIREKIGSGLVIISMILQLTA-SS 120

Query: 121 SSIRTRKGERVFSRYVSYGMASLVAFSYGLPIFFFLIQMGKMNF 164
                 K +  F R+V YGMA LV FSYGLP  FF++Q G++ F
Sbjct: 121 LEAPPHKQQSKFPRFVEYGMAILVGFSYGLPFVFFVVQKGELKF 163

[Close]

BLAST of CmoCh07G007640 vs. NCBI nr
Match: gi|224096884|ref|XP_002310773.1| (hypothetical protein POPTR_0007s12140g [Populus trichocarpa])

HSP 1 Score: 184.5 bits (467), Expect = 1.5e-43
Identity = 97/157 (61.78%), Postives = 112/157 (71.34%), Query Frame = 1


Query: 8   YSCCSLLMAFLFAYSTAVQFNDPDWYLWIPLYGCACAVNLLNWDVSLQGVAYIAKATLGL 67
           +S CSLLMA LF YS +VQ NDPDWY W+PLY CACAVNL+NW +S   +  IAK TL  
Sbjct: 7   FSLCSLLMAALFGYSASVQLNDPDWYFWLPLYACACAVNLVNWAISNTTIRQIAKVTLWF 66

Query: 68  GICLWVKVVAEDFVNGIAGFLSLDLSERVVREKTGSGLVVSSMVLHLIAESS-SSIRTRK 127
              L+VKVV ED+VNG AGF SLD+SERVVREKTGSGLV+ SM+LHL A S     +  +
Sbjct: 67  AALLFVKVVIEDYVNGTAGFWSLDVSERVVREKTGSGLVLISMILHLEASSEPKHSKMPR 126

Query: 128 GERVFSRYVSYGMASLVAFSYGLPIFFFLIQMGKMNF 164
             R F R V YGMASLV FS GLP  FF+I  G+M F
Sbjct: 127 KRREFPRSVEYGMASLVIFSLGLPFVFFVIHDGEMKF 163

The following BLAST results are available for this feature:

BLAST of CmoCh07G007640 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh07G007640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI28_CUCSA	5.6e-66	76.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G487800 PE=4 SV=1	[more]
A0A0D2THL9_GOSRA	8.5e-46	57.83	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G033200 PE=4 SV=1	[more]
B9HEL5_POPTR	1.0e-43	61.78	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s12140g PE=4 SV=1	[more]
A0A0D2V109_GOSRA	1.4e-43	55.17	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G033200 PE=4 SV=1	[more]
A0A0B0PLS9_GOSAR	4.3e-42	56.02	Uncharacterized protein OS=Gossypium arboreum GN=F383_06641 PE=4 SV=1	[more]

BLAST of CmoCh07G007640 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G23755.1	1.3e-37	51.55	unknown protein	[more]

BLAST of CmoCh07G007640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448390\|ref\|XP_004141949.1\|	8.1e-66	76.19	PREDICTED: transmembrane protein 220 [Cucumis sativus]	[more]
gi\|659079284\|ref\|XP_008440175.1\|	2.4e-65	76.51	PREDICTED: transmembrane protein 220 [Cucumis melo]	[more]
gi\|823251618\|ref\|XP_012458450.1\|	1.2e-45	57.83	PREDICTED: uncharacterized protein LOC105779217 isoform X2 [Gossypium raimondii]	[more]
gi\|645272874\|ref\|XP_008241604.1\|	6.7e-44	57.93	PREDICTED: transmembrane protein 220 [Prunus mume]	[more]
gi\|224096884\|ref\|XP_002310773.1\|	1.5e-43	61.78	hypothetical protein POPTR_0007s12140g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G007640.1	CmoCh07G007640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34262	FAMILY NOT NAMED	coord: 1..163 score: 2.2
None	No IPR available	PANTHER	PTHR34262:SF1	TRANSMEMBRANE PROTEIN 220	coord: 1..163 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G007640	Cucsa.101860	Cucumber (Gy14) v1	cgycmoB0233
CmoCh07G007640	CmaCh07G007430	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G007640	Csa6G487800	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G007640	MELO3C007502	Melon (DHL92) v3.5.1	cmomeB793
CmoCh07G007640	ClCG01G016310	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G007640	CSPI06G27480	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G007640	Cp4.1LG19g11590	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G007640	MELO3C007502.2	Melon (DHL92) v3.6.1	cmomedB896
CmoCh07G007640	CsaV3_6G042630	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G007640	Cla97C01G015310	Watermelon (97103) v2	cmowmbB849
CmoCh07G007640	Bhi03G001510	Wax gourd	cmowgoB1053
CmoCh07G007640	CsGy6G026840	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G007640	Carg05251	Silver-seed gourd	carcmoB1100

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G007640	Cucumber (Gy14) v2	cgybcmoB250
CmoCh07G007640	Melon (DHL92) v3.6.1	cmomedB879
CmoCh07G007640	Silver-seed gourd	carcmoB0264
CmoCh07G007640	Silver-seed gourd	carcmoB0554
CmoCh07G007640	Cucumber (Chinese Long) v3	cmocucB0991
CmoCh07G007640	Cucumber (Chinese Long) v3	cmocucB0992
CmoCh07G007640	Watermelon (97103) v2	cmowmbB877
CmoCh07G007640	Wax gourd	cmowgoB1045
CmoCh07G007640	Cucurbita moschata (Rifu)	cmocmoB037
CmoCh07G007640	Cucurbita moschata (Rifu)	cmocmoB376
CmoCh07G007640	Cucurbita moschata (Rifu)	cmocmoB455
CmoCh07G007640	Cucurbita moschata (Rifu)	cmocmoB481
CmoCh07G007640	Cucumber (Gy14) v1	cgycmoB0644
CmoCh07G007640	Cucumber (Gy14) v1	cgycmoB1021
CmoCh07G007640	Cucurbita maxima (Rimu)	cmacmoB065
CmoCh07G007640	Cucurbita maxima (Rimu)	cmacmoB667
CmoCh07G007640	Cucurbita maxima (Rimu)	cmacmoB791
CmoCh07G007640	Wild cucumber (PI 183967)	cmocpiB848
CmoCh07G007640	Wild cucumber (PI 183967)	cmocpiB849
CmoCh07G007640	Cucumber (Chinese Long) v2	cmocuB838
CmoCh07G007640	Cucumber (Chinese Long) v2	cmocuB839
CmoCh07G007640	Melon (DHL92) v3.5.1	cmomeB775
CmoCh07G007640	Watermelon (Charleston Gray)	cmowcgB756
CmoCh07G007640	Watermelon (Charleston Gray)	cmowcgB759
CmoCh07G007640	Watermelon (Charleston Gray)	cmowcgB778
CmoCh07G007640	Watermelon (97103) v1	cmowmB808
CmoCh07G007640	Watermelon (97103) v1	cmowmB816
CmoCh07G007640	Watermelon (97103) v1	cmowmB831
CmoCh07G007640	Watermelon (97103) v1	cmowmB833
CmoCh07G007640	Cucurbita pepo (Zucchini)	cmocpeB820
CmoCh07G007640	Cucurbita pepo (Zucchini)	cmocpeB806
CmoCh07G007640	Cucurbita pepo (Zucchini)	cmocpeB809
CmoCh07G007640	Cucurbita pepo (Zucchini)	cmocpeB829
CmoCh07G007640	Cucurbita pepo (Zucchini)	cmocpeB827
CmoCh07G007640	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G007640	Bottle gourd (USVL1VR-Ls)	cmolsiB796