Cp4.1LG18g09440 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG18g09440
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionBasic helix-loop-helix transcription factor
LocationCp4.1LG18 : 8230223 .. 8231813 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTGTGGGAGCTTACATGTTATTATGAACAACTCCCAATTCCTCCCCTCTCCCGACTCCTTTGCGCTCTCAAAAATGAACCCATGTAGCTGGGAGTTGGAAGAAGCGCCACAAATCCCCCACTTTCACCACCTTCTTCCACCTCAAATCCAATCTTCCTCGGTTCAGCAAACTGCCCACCACCACCACCTCCCGCCTCGCATATTACCCACCGCCACCAACCCATTGCCTTCTTCCCACTCTCTCTCTCCGTCCGTATGTACTCTCCCTCTCACTTGTGTGTTTATGGTATGCATTATATATTAAGTGCTTCTAATTTAACCTCTGCTTATTCCCATTACCAGAAGGAGGACCCAAATGAAAGAGGGGGCGACGGCAAGAGGAGAGGCTACAAGCGTGCAAAAGCAGGAGGAGGCCGCAAGAAGCTCAAAACCCAAGACCACCCTCAAGTTCCTCCACCACCAGGGTACATCCACGTAAGAGCCAGGAGGGGTCAGGCCACAGACCGCCACAGCCTTGCAGAAAGGGTAATCGTCATATATATCCAAATTACCTCAATTCCTCTCTTTTAACTCTTAATTAATTACTAATTGGAGTTCCAGGTGAGAAGACAGAAAATCAGCCAAAGGATGAAGGTTCTGCAGACGCTTGTTCCAGGCTGCCACAAGGTTCGTCCGCCTACTTTTATTACCTCTTGCTTTCTTCTACCCAATCACTCTCCTTCATCAAACCATATATATAAATATATATGCCACCATAGGTAACTGGGAAGGCCCTTATGCTGGACGAAATTATTAACTATGTTCAGTCCCTGCAAAGTCAAATTGAGGTACATATATCAAAAATTAAATAAACCCAATTAGCATCATGAATGGGCGCTAATTCATGCATTTTTCTTCACAACTCATTAAATACTTTGCAGCTTCTGTCCATGGAGCTTGCTTCTGTTCACCCCATCCGCTATGACTTTGGAATGGATAATCCAGAGGTATTCATCGGTACGCCAGTCACACAGGTATTGAACGGGAGTGGCATGGTGTCACGTTCAGAGCAGGCAGAATTGGCATATAATATGGCGTCATGCAACACATTTCAGGCCACAGGCGGTGGCGGTGGCGGTGGTGACAGCCCAATCTTAACGGCTGAAAACGGCAGCTTTATCCCAGTGGACATGAATCCATCTCAACTTTTCCTGGATTATGGGAATGCTTCTCTGCAACATCTGTCATGATTTTCTAATTTACTCACAAAACAGAAAGTGAAAGAGATGATAATTAAATTTGAGTGGAGATGAGTGGGTGGTTCTATGTTAACAGAACTCATCTTCATACTGGATACATCACATTACTTATTGTGAATATGTGTAAGTCTTATCCTTGGGTTGGAAGCCAAATTTTGTGGCGCAGGGAAAAGTGTGTATTGTGGGACTACCTTTTATCTGTAATCAATCATATGGGTGGTTTTAAGCAACAATTTCTCCTCTACTTTCTTGTCTTAATTGCCTCTACTTTCTTGTCTTAATTGCCTCTACTCGTGTCCTGATGATATAATAATGGCAAGGGATGGATATAATCTGTAGTGTCTGATGAAT

mRNA sequence

TGTTGTGGGAGCTTACATGTTATTATGAACAACTCCCAATTCCTCCCCTCTCCCGACTCCTTTGCGCTCTCAAAAATGAACCCATGTAGCTGGGAGTTGGAAGAAGCGCCACAAATCCCCCACTTTCACCACCTTCTTCCACCTCAAATCCAATCTTCCTCGGTTCAGCAAACTGCCCACCACCACCACCTCCCGCCTCGCATATTACCCACCGCCACCAACCCATTGCCTTCTTCCCACTCTCTCTCTCCGTCCGTATGTACTCTCCCTCTCACTTGTGTGTTTATGGTATGCATTATATATTAAGTGCTTCTAATTTAACCTCTGCTTATTCCCATTACCAGAAGGAGGACCCAAATGAAAGAGGGGGCGACGGCAAGAGGAGAGGCTACAAGCGTGCAAAAGCAGGAGGAGGCCGCAAGAAGCTCAAAACCCAAGACCACCCTCAAGTTCCTCCACCACCAGGGTACATCCACGTAAGAGCCAGGAGGGGTCAGGCCACAGACCGCCACAGCCTTGCAGAAAGGGTGAGAAGACAGAAAATCAGCCAAAGGATGAAGGTTCTGCAGACGCTTGTTCCAGGCTGCCACAAGGTAACTGGGAAGGCCCTTATGCTGGACGAAATTATTAACTATGTTCAGTCCCTGCAAAGTCAAATTGAGCTTCTGTCCATGGAGCTTGCTTCTGTTCACCCCATCCGCTATGACTTTGGAATGGATAATCCAGAGGTATTCATCGGTACGCCAGTCACACAGGTATTGAACGGGAGTGGCATGGTGTCACGTTCAGAGCAGGCAGAATTGGCATATAATATGGCGTCATGCAACACATTTCAGGCCACAGGCGGTGGCGGTGGCGGTGGTGACAGCCCAATCTTAACGGCTGAAAACGGCAGCTTTATCCCAGTGGACATGAATCCATCTCAACTTTTCCTGGATTATGGGAATGCTTCTCTGCAACATCTGTCATGATTTTCTAATTTACTCACAAAACAGAAAGTGAAAGAGATGATAATTAAATTTGAGTGGAGATGAGTGGGTGGTTCTATGTTAACAGAACTCATCTTCATACTGGATACATCACATTACTTATTGTGAATATGTGTAAGTCTTATCCTTGGGTTGGAAGCCAAATTTTGTGGCGCAGGGAAAAGTGTGTATTGTGGGACTACCTTTTATCTGTAATCAATCATATGGGTGGTTTTAAGCAACAATTTCTCCTCTACTTTCTTGTCTTAATTGCCTCTACTTTCTTGTCTTAATTGCCTCTACTCGTGTCCTGATGATATAATAATGGCAAGGGATGGATATAATCTGTAGTGTCTGATGAAT

Coding sequence (CDS)

ATGTACTCTCCCTCTCACTTGTGTGTTTATGGTATGCATTATATATTAAGTGCTTCTAATTTAACCTCTGCTTATTCCCATTACCAGAAGGAGGACCCAAATGAAAGAGGGGGCGACGGCAAGAGGAGAGGCTACAAGCGTGCAAAAGCAGGAGGAGGCCGCAAGAAGCTCAAAACCCAAGACCACCCTCAAGTTCCTCCACCACCAGGGTACATCCACGTAAGAGCCAGGAGGGGTCAGGCCACAGACCGCCACAGCCTTGCAGAAAGGGTGAGAAGACAGAAAATCAGCCAAAGGATGAAGGTTCTGCAGACGCTTGTTCCAGGCTGCCACAAGGTAACTGGGAAGGCCCTTATGCTGGACGAAATTATTAACTATGTTCAGTCCCTGCAAAGTCAAATTGAGCTTCTGTCCATGGAGCTTGCTTCTGTTCACCCCATCCGCTATGACTTTGGAATGGATAATCCAGAGGTATTCATCGGTACGCCAGTCACACAGGTATTGAACGGGAGTGGCATGGTGTCACGTTCAGAGCAGGCAGAATTGGCATATAATATGGCGTCATGCAACACATTTCAGGCCACAGGCGGTGGCGGTGGCGGTGGTGACAGCCCAATCTTAACGGCTGAAAACGGCAGCTTTATCCCAGTGGACATGAATCCATCTCAACTTTTCCTGGATTATGGGAATGCTTCTCTGCAACATCTGTCATGA

Protein sequence

MYSPSHLCVYGMHYILSASNLTSAYSHYQKEDPNERGGDGKRRGYKRAKAGGGRKKLKTQDHPQVPPPPGYIHVRARRGQATDRHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIELLSMELASVHPIRYDFGMDNPEVFIGTPVTQVLNGSGMVSRSEQAELAYNMASCNTFQATGGGGGGGDSPILTAENGSFIPVDMNPSQLFLDYGNASLQHLS
Homology
[Close]
BLAST of Cp4.1LG18g09440 vs. Swiss-Prot
Match: BH137_ARATH (Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-32
Identity = 78/128 (60.94%), Postives = 91/128 (71.09%), Query Frame = 1 

Query: 33  PNERGGDGKRRGYKRAKAGG------GRKKLKTQDHPQVPPPPGYIHVRARRGQATDRHS 92
           P+     GK RG K   +        GRK  K +   +  PP  YIHVRARRGQATD HS
Sbjct: 89  PSAITNTGKTRGRKARNSNNSKEGVEGRKSKKQKRGSKEEPPTDYIHVRARRGQATDSHS 148

Query: 93  LAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIELLSMELASVHP 152
           LAERVRR+KIS+RM+ LQ LVPGC KVTGKALMLDEIINYVQ+LQ+Q+E LSM+L S+ P
Sbjct: 149 LAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSISP 208

Query: 153 IRYDFGMD 155
           + YDFG D
Sbjct: 209 VVYDFGSD 216

[Close]
BLAST of Cp4.1LG18g09440 vs. Swiss-Prot
Match: BH049_ARATH (Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=1 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 9.4e-31
Identity = 80/139 (57.55%), Postives = 98/139 (70.50%), Query Frame = 1 

Query: 20  NLTSAYSH--YQKEDPNERGGDGKRRGYKRAKAGGGRKKLKTQDHPQVPPPP--GYIHVR 79
           N  +A SH   Q E+  +  GD KR   +   + G +     Q   Q   PP  GYIHVR
Sbjct: 245 NSEAAQSHRSQQSEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVR 304

Query: 80  ARRGQATDRHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIE 139
           ARRGQAT+ HSLAERVRR+KIS+RMK LQ LVPGC+KVTGKA+MLDEIINYVQSLQ Q+E
Sbjct: 305 ARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 364

Query: 140 LLSMELASVHPIRYDFGMD 155
            LSM+LA+V+P + DF ++
Sbjct: 365 FLSMKLATVNP-QMDFNLE 382

[Close]
BLAST of Cp4.1LG18g09440 vs. Swiss-Prot
Match: BH078_ARATH (Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.6e-30
Identity = 74/120 (61.67%), Postives = 89/120 (74.17%), Query Frame = 1 

Query: 35  ERGGDGKRRGYKRAKAGGGRKKLKTQDHPQVPPPPGYIHVRARRGQATDRHSLAERVRRQ 94
           E+GG  +R      +  G  +  K+ +     PP  YIHVRARRGQATD HSLAERVRR+
Sbjct: 262 EKGGKRRREEEDDEEEEGEGEGNKSNNTKPPEPPKDYIHVRARRGQATDSHSLAERVRRE 321

Query: 95  KISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIELLSMELASVHPIRYDFGMD 154
           KI +RMK+LQ LVPGC+KVTGKALMLDEIINYVQSLQ Q+E LSM+L+SV+  R DF +D
Sbjct: 322 KIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFNVD 381

[Close]
BLAST of Cp4.1LG18g09440 vs. Swiss-Prot
Match: BH062_ARATH (Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 3.9e-29
Identity = 82/138 (59.42%), Postives = 96/138 (69.57%), Query Frame = 1 

Query: 17  SASNLTSAYSHYQKEDPNERGGDGKRRGYKRAKAGGGRKKLKTQDHPQVPPPPGYIHVRA 76
           S  N  SA S   KE   +   D KR   K+++  G + K        + P   YIHVRA
Sbjct: 211 SKQNSPSAVSS-SKEIEEKEDSDPKR--CKKSEENGDKTK-------SIDPYKDYIHVRA 270

Query: 77  RRGQATDRHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIEL 136
           RRGQATD HSLAERVRR+KIS+RMK+LQ LVPGC+KVTGKALMLDEIINYVQSLQ Q+E 
Sbjct: 271 RRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEF 330

Query: 137 LSMELASVHPIRYDFGMD 155
           LSM+L+SV+  R DF MD
Sbjct: 331 LSMKLSSVN-TRLDFNMD 337

[Close]
BLAST of Cp4.1LG18g09440 vs. Swiss-Prot
Match: BH063_ARATH (Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.1e-28
Identity = 71/99 (71.72%), Postives = 80/99 (80.81%), Query Frame = 1 

Query: 71  YIHVRARRGQATDRHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSL 130
           YIHVRARRGQATD HS+AERVRR+KIS+RMK LQ LVPGC K+TGKA MLDEIINYVQSL
Sbjct: 169 YIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSL 228

Query: 131 QSQIELLSMELASVHPIRYDFGMDN--PEVFIGTPVTQV 168
           Q QIE LSM+LA V+P R DF MD+   +    TP+T V
Sbjct: 229 QRQIEFLSMKLAIVNP-RPDFDMDDIFAKEVASTPMTVV 266

[Close]
BLAST of Cp4.1LG18g09440 vs. TrEMBL
Match: A0A0A0LTX6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000700 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 5.9e-64
Identity = 153/229 (66.81%), Postives = 174/229 (75.98%), Query Frame = 1 

Query: 21  LTSAYSH---YQKEDPN-ERGGDGKRRGYKRAKAGG--GRKK---LKTQDHPQVPPPPGY 80
           + S++SH    ++EDPN  +GG+ KRR Y RAKAGG  G KK   +KTQ  P        
Sbjct: 60  MPSSHSHPPSAEEEDPNGSKGGECKRRCYNRAKAGGRSGCKKKMMIKTQHDPAD------ 119

Query: 81  IHVRARRGQATDRHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQ 140
            HVRARRGQATD HSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQ
Sbjct: 120 -HVRARRGQATDSHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQ 179

Query: 141 SQIELLSMELASVHPIRYDFGMDNPEV-FIGTPVTQVLNGSGMVSRSEQAELAYNMAS-- 200
           +Q+E LSM+LAS+ P+ +DFGMD PEV  +GTP +++LNG+GMVS SE AELAYN  +  
Sbjct: 180 NQVEFLSMKLASLDPVLHDFGMDFPEVLLVGTPASEILNGNGMVSHSEHAELAYNNMAPI 239

Query: 201 CNTFQATGGGGGGGDSPILTAENGSFIPVDMNPSQLFLDYGNASLQHLS 238
            NTFQATGGGGGG  SPILT  N SFI    NPS LFLD+GN S  HLS
Sbjct: 240 YNTFQATGGGGGG--SPILTPGNSSFI----NPSPLFLDHGNTSQLHLS 275

[Close]
BLAST of Cp4.1LG18g09440 vs. TrEMBL
Match: E5GBM5_CUCME (BHLH transcription factor OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.4e-44
Identity = 102/141 (72.34%), Postives = 115/141 (81.56%), Query Frame = 1 

Query: 100 MKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIELLSMELASVHPIRYDFGMDNPEVF 159
           MKVLQTLVPGCHKVTGKA MLDEIINYVQSLQ+Q+E LSM+LAS+HP+ YDFGMD PEV 
Sbjct: 1   MKVLQTLVPGCHKVTGKASMLDEIINYVQSLQNQVEFLSMKLASLHPVLYDFGMDFPEVL 60

Query: 160 I-GTPVTQVLNGSGMVSRSEQAELAYNMAS--CNTFQATGGGGGGGDSPILTAENGSFIP 219
           I GTP +++LNG+GMVS SEQAELA+N  +   NTFQATG GGGG  SPILT  N SFI 
Sbjct: 61  IVGTPASEILNGNGMVSHSEQAELAHNNMAPIYNTFQATGSGGGG--SPILTPGNSSFI- 120

Query: 220 VDMNPSQLFLDYGNASLQHLS 238
              NPS LF+D+GN SL HLS
Sbjct: 121 ---NPSPLFIDHGNTSLLHLS 135

[Close]
BLAST of Cp4.1LG18g09440 vs. TrEMBL
Match: A0A068TQZ5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022830001 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.7e-34
Identity = 97/186 (52.15%), Postives = 118/186 (63.44%), Query Frame = 1 

Query: 38  GDGKRRGYKRAKAGGGRKK---LKTQDHPQVP-------PPPGYIHVRARRGQATDRHSL 97
           GD   +G K+ K G   K+    K+ +  +VP       PP GYIHVRARRGQATD HSL
Sbjct: 148 GDQLAKGKKQRKCGRIMKEDEDKKSNEDKKVPEKAAEEAPPTGYIHVRARRGQATDSHSL 207

Query: 98  AERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIELLSMELASVHPI 157
           AERVRR+KIS+RMK+LQ LVPGC KVTGKALMLDEIINYVQSLQ+Q+E LSM+LAS++P+
Sbjct: 208 AERVRREKISERMKILQALVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPM 267

Query: 158 RYDFGMDNPEVFIGTPVTQVLNGSGMVSRSEQAELAYNMASCNTFQATGGGGGGGDSPIL 214
            YDFGMD  + +I  P   +         S  A    NM  C+  QA          PI+
Sbjct: 268 FYDFGMD-LDPYIARPEPTL---------SNMASPVQNMQQCDPMQA----------PII 313

[Close]
BLAST of Cp4.1LG18g09440 vs. TrEMBL
Match: B4FI37_MAIZE (BHLH transcription factor OS=Zea mays GN=bHLH23 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.8e-34
Identity = 97/217 (44.70%), Postives = 132/217 (60.83%), Query Frame = 1 

Query: 17  SASNLTSAYSHYQKEDPNERGGDGKRRGYKRAKAGGGRKKLKTQDHPQVPPPPGYIHVRA 76
           SAS   S  S + K+  ++  G  K RG KR ++    K++  ++ P+     GYIHVRA
Sbjct: 74  SASASFSFSSAHSKDSSSK--GSTKNRGGKRGRSS---KEVDEEEEPK-----GYIHVRA 133

Query: 77  RRGQATDRHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIEL 136
           RRGQATD HSLAERVRR++IS+RM+VLQ LVPGC KVTGKAL+LDEIINYVQSLQ+Q+E 
Sbjct: 134 RRGQATDSHSLAERVRRERISERMRVLQALVPGCDKVTGKALVLDEIINYVQSLQNQVEF 193

Query: 137 LSMELASVHPIRYDFGMDNPEVFIGTPVTQVLNG------------SGMVSR------SE 196
           LSM++AS+ P+ Y FGMD  + F     TQ + G            S  +SR      ++
Sbjct: 194 LSMKIASLSPVLYGFGMDTTDAFSTDHTTQKIEGMLQLHHEALAVPSSALSRPPFEAIAD 253

Query: 197 QAELAYNMASCNTFQATGGGGGGGDSPILTAENGSFI 216
                 + +S  +++  G GGGGG S     + G ++
Sbjct: 254 STHATASASSPRSYELHGDGGGGGASISFPQDGGGYM 280

[Close]
BLAST of Cp4.1LG18g09440 vs. TrEMBL
Match: A0A096T1G8_MAIZE (Uncharacterized protein OS=Zea mays GN=LOC100194274 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.8e-34
Identity = 97/217 (44.70%), Postives = 132/217 (60.83%), Query Frame = 1 

Query: 17  SASNLTSAYSHYQKEDPNERGGDGKRRGYKRAKAGGGRKKLKTQDHPQVPPPPGYIHVRA 76
           SAS   S  S + K+  ++  G  K RG KR ++    K++  ++ P+     GYIHVRA
Sbjct: 64  SASASFSFSSAHSKDSSSK--GSTKNRGGKRGRSS---KEVDEEEEPK-----GYIHVRA 123

Query: 77  RRGQATDRHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIEL 136
           RRGQATD HSLAERVRR++IS+RM+VLQ LVPGC KVTGKAL+LDEIINYVQSLQ+Q+E 
Sbjct: 124 RRGQATDSHSLAERVRRERISERMRVLQALVPGCDKVTGKALVLDEIINYVQSLQNQVEF 183

Query: 137 LSMELASVHPIRYDFGMDNPEVFIGTPVTQVLNG------------SGMVSR------SE 196
           LSM++AS+ P+ Y FGMD  + F     TQ + G            S  +SR      ++
Sbjct: 184 LSMKIASLSPVLYGFGMDTTDAFSTDHTTQKIEGMLQLHHEALAVPSSALSRPPFEAIAD 243

Query: 197 QAELAYNMASCNTFQATGGGGGGGDSPILTAENGSFI 216
                 + +S  +++  G GGGGG S     + G ++
Sbjct: 244 STHATASASSPRSYELHGDGGGGGASISFPQDGGGYM 270

[Close]
BLAST of Cp4.1LG18g09440 vs. TAIR10
Match: AT5G50915.1 (AT5G50915.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 141.4 bits (355), Expect = 7.4e-34
Identity = 78/128 (60.94%), Postives = 91/128 (71.09%), Query Frame = 1 

Query: 33  PNERGGDGKRRGYKRAKAGG------GRKKLKTQDHPQVPPPPGYIHVRARRGQATDRHS 92
           P+     GK RG K   +        GRK  K +   +  PP  YIHVRARRGQATD HS
Sbjct: 89  PSAITNTGKTRGRKARNSNNSKEGVEGRKSKKQKRGSKEEPPTDYIHVRARRGQATDSHS 148

Query: 93  LAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIELLSMELASVHP 152
           LAERVRR+KIS+RM+ LQ LVPGC KVTGKALMLDEIINYVQ+LQ+Q+E LSM+L S+ P
Sbjct: 149 LAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSISP 208

Query: 153 IRYDFGMD 155
           + YDFG D
Sbjct: 209 VVYDFGSD 216

[Close]
BLAST of Cp4.1LG18g09440 vs. TAIR10
Match: AT1G68920.1 (AT1G68920.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 135.2 bits (339), Expect = 5.3e-32
Identity = 80/139 (57.55%), Postives = 98/139 (70.50%), Query Frame = 1 

Query: 20  NLTSAYSH--YQKEDPNERGGDGKRRGYKRAKAGGGRKKLKTQDHPQVPPPP--GYIHVR 79
           N  +A SH   Q E+  +  GD KR   +   + G +     Q   Q   PP  GYIHVR
Sbjct: 245 NSEAAQSHRSQQSEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGYIHVR 304

Query: 80  ARRGQATDRHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIE 139
           ARRGQAT+ HSLAERVRR+KIS+RMK LQ LVPGC+KVTGKA+MLDEIINYVQSLQ Q+E
Sbjct: 305 ARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 364

Query: 140 LLSMELASVHPIRYDFGMD 155
            LSM+LA+V+P + DF ++
Sbjct: 365 FLSMKLATVNP-QMDFNLE 382

[Close]
BLAST of Cp4.1LG18g09440 vs. TAIR10
Match: AT5G48560.1 (AT5G48560.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 134.4 bits (337), Expect = 9.0e-32
Identity = 74/120 (61.67%), Postives = 89/120 (74.17%), Query Frame = 1 

Query: 35  ERGGDGKRRGYKRAKAGGGRKKLKTQDHPQVPPPPGYIHVRARRGQATDRHSLAERVRRQ 94
           E+GG  +R      +  G  +  K+ +     PP  YIHVRARRGQATD HSLAERVRR+
Sbjct: 262 EKGGKRRREEEDDEEEEGEGEGNKSNNTKPPEPPKDYIHVRARRGQATDSHSLAERVRRE 321

Query: 95  KISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIELLSMELASVHPIRYDFGMD 154
           KI +RMK+LQ LVPGC+KVTGKALMLDEIINYVQSLQ Q+E LSM+L+SV+  R DF +D
Sbjct: 322 KIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLSSVNDTRLDFNVD 381

[Close]
BLAST of Cp4.1LG18g09440 vs. TAIR10
Match: AT3G07340.1 (AT3G07340.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 129.8 bits (325), Expect = 2.2e-30
Identity = 82/138 (59.42%), Postives = 96/138 (69.57%), Query Frame = 1 

Query: 17  SASNLTSAYSHYQKEDPNERGGDGKRRGYKRAKAGGGRKKLKTQDHPQVPPPPGYIHVRA 76
           S  N  SA S   KE   +   D KR   K+++  G + K        + P   YIHVRA
Sbjct: 211 SKQNSPSAVSS-SKEIEEKEDSDPKR--CKKSEENGDKTK-------SIDPYKDYIHVRA 270

Query: 77  RRGQATDRHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIEL 136
           RRGQATD HSLAERVRR+KIS+RMK+LQ LVPGC+KVTGKALMLDEIINYVQSLQ Q+E 
Sbjct: 271 RRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEF 330

Query: 137 LSMELASVHPIRYDFGMD 155
           LSM+L+SV+  R DF MD
Sbjct: 331 LSMKLSSVN-TRLDFNMD 337

[Close]
BLAST of Cp4.1LG18g09440 vs. TAIR10
Match: AT4G34530.1 (AT4G34530.1 cryptochrome-interacting basic-helix-loop-helix 1)

HSP 1 Score: 128.3 bits (321), Expect = 6.5e-30
Identity = 71/99 (71.72%), Postives = 80/99 (80.81%), Query Frame = 1 

Query: 71  YIHVRARRGQATDRHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSL 130
           YIHVRARRGQATD HS+AERVRR+KIS+RMK LQ LVPGC K+TGKA MLDEIINYVQSL
Sbjct: 169 YIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSL 228

Query: 131 QSQIELLSMELASVHPIRYDFGMDN--PEVFIGTPVTQV 168
           Q QIE LSM+LA V+P R DF MD+   +    TP+T V
Sbjct: 229 QRQIEFLSMKLAIVNP-RPDFDMDDIFAKEVASTPMTVV 266

[Close]
BLAST of Cp4.1LG18g09440 vs. NCBI nr
Match: gi|778655231|ref|XP_004138026.2| (PREDICTED: transcription factor bHLH137-like [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 8.4e-64
Identity = 153/229 (66.81%), Postives = 174/229 (75.98%), Query Frame = 1 

Query: 21  LTSAYSH---YQKEDPN-ERGGDGKRRGYKRAKAGG--GRKK---LKTQDHPQVPPPPGY 80
           + S++SH    ++EDPN  +GG+ KRR Y RAKAGG  G KK   +KTQ  P        
Sbjct: 60  MPSSHSHPPSAEEEDPNGSKGGECKRRCYNRAKAGGRSGCKKKMMIKTQHDPAD------ 119

Query: 81  IHVRARRGQATDRHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQ 140
            HVRARRGQATD HSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQ
Sbjct: 120 -HVRARRGQATDSHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQ 179

Query: 141 SQIELLSMELASVHPIRYDFGMDNPEV-FIGTPVTQVLNGSGMVSRSEQAELAYNMAS-- 200
           +Q+E LSM+LAS+ P+ +DFGMD PEV  +GTP +++LNG+GMVS SE AELAYN  +  
Sbjct: 180 NQVEFLSMKLASLDPVLHDFGMDFPEVLLVGTPASEILNGNGMVSHSEHAELAYNNMAPI 239

Query: 201 CNTFQATGGGGGGGDSPILTAENGSFIPVDMNPSQLFLDYGNASLQHLS 238
            NTFQATGGGGGG  SPILT  N SFI    NPS LFLD+GN S  HLS
Sbjct: 240 YNTFQATGGGGGG--SPILTPGNSSFI----NPSPLFLDHGNTSQLHLS 275

[Close]
BLAST of Cp4.1LG18g09440 vs. NCBI nr
Match: gi|659128812|ref|XP_008464382.1| (PREDICTED: transcription factor bHLH137-like [Cucumis melo])

HSP 1 Score: 246.1 bits (627), Expect = 6.0e-62
Identity = 150/234 (64.10%), Postives = 173/234 (73.93%), Query Frame = 1 

Query: 13  HYILSASNLTSAYSHYQKEDPNERGGDGKRRG-YKRAKAG---GGRKKL--KTQDHPQVP 72
           H+I   S+ +   S  +++    +GG+ KRR  Y RAKAG   G +KK+  KTQ  P   
Sbjct: 56  HHIYMPSSHSHPPSAEEEDQNGSKGGECKRRRCYNRAKAGERSGCKKKMTIKTQHDPAD- 115

Query: 73  PPPGYIHVRARRGQATDRHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINY 132
                 HVRARRGQATD HSLAERVRRQKISQRMKVLQTLVPGCHKVTGKA MLDEIINY
Sbjct: 116 ------HVRARRGQATDSHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKASMLDEIINY 175

Query: 133 VQSLQSQIELLSMELASVHPIRYDFGMDNPEVFI-GTPVTQVLNGSGMVSRSEQAELAYN 192
           VQSLQ+Q+E LSM+LAS+HP+ YDFGMD PEV I GTP +++LNG+GMVS SEQAELA+N
Sbjct: 176 VQSLQNQVEFLSMKLASLHPVLYDFGMDFPEVLIVGTPASEILNGNGMVSHSEQAELAHN 235

Query: 193 MAS--CNTFQATGGGGGGGDSPILTAENGSFIPVDMNPSQLFLDYGNASLQHLS 238
             +   NTFQATG GGGG  SPILT  N SFI    NPS LF+D+GN SL HLS
Sbjct: 236 NMAPIYNTFQATGSGGGG--SPILTPGNSSFI----NPSPLFIDHGNTSLLHLS 276

[Close]
BLAST of Cp4.1LG18g09440 vs. NCBI nr
Match: gi|307136009|gb|ADN33865.1| (bHLH transcription factor [Cucumis melo subsp. melo])

HSP 1 Score: 188.0 bits (476), Expect = 2.0e-44
Identity = 102/141 (72.34%), Postives = 115/141 (81.56%), Query Frame = 1 

Query: 100 MKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIELLSMELASVHPIRYDFGMDNPEVF 159
           MKVLQTLVPGCHKVTGKA MLDEIINYVQSLQ+Q+E LSM+LAS+HP+ YDFGMD PEV 
Sbjct: 1   MKVLQTLVPGCHKVTGKASMLDEIINYVQSLQNQVEFLSMKLASLHPVLYDFGMDFPEVL 60

Query: 160 I-GTPVTQVLNGSGMVSRSEQAELAYNMAS--CNTFQATGGGGGGGDSPILTAENGSFIP 219
           I GTP +++LNG+GMVS SEQAELA+N  +   NTFQATG GGGG  SPILT  N SFI 
Sbjct: 61  IVGTPASEILNGNGMVSHSEQAELAHNNMAPIYNTFQATGSGGGG--SPILTPGNSSFI- 120

Query: 220 VDMNPSQLFLDYGNASLQHLS 238
              NPS LF+D+GN SL HLS
Sbjct: 121 ---NPSPLFIDHGNTSLLHLS 135

[Close]
BLAST of Cp4.1LG18g09440 vs. NCBI nr
Match: gi|661898694|emb|CDO98661.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 154.5 bits (389), Expect = 2.4e-34
Identity = 97/186 (52.15%), Postives = 118/186 (63.44%), Query Frame = 1 

Query: 38  GDGKRRGYKRAKAGGGRKK---LKTQDHPQVP-------PPPGYIHVRARRGQATDRHSL 97
           GD   +G K+ K G   K+    K+ +  +VP       PP GYIHVRARRGQATD HSL
Sbjct: 148 GDQLAKGKKQRKCGRIMKEDEDKKSNEDKKVPEKAAEEAPPTGYIHVRARRGQATDSHSL 207

Query: 98  AERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIELLSMELASVHPI 157
           AERVRR+KIS+RMK+LQ LVPGC KVTGKALMLDEIINYVQSLQ+Q+E LSM+LAS++P+
Sbjct: 208 AERVRREKISERMKILQALVPGCDKVTGKALMLDEIINYVQSLQNQVEFLSMKLASLNPM 267

Query: 158 RYDFGMDNPEVFIGTPVTQVLNGSGMVSRSEQAELAYNMASCNTFQATGGGGGGGDSPIL 214
            YDFGMD  + +I  P   +         S  A    NM  C+  QA          PI+
Sbjct: 268 FYDFGMD-LDPYIARPEPTL---------SNMASPVQNMQQCDPMQA----------PII 313

[Close]
BLAST of Cp4.1LG18g09440 vs. NCBI nr
Match: gi|212721128|ref|NP_001132785.1| (putative HLH DNA-binding domain superfamily protein [Zea mays])

HSP 1 Score: 153.7 bits (387), Expect = 4.1e-34
Identity = 97/217 (44.70%), Postives = 132/217 (60.83%), Query Frame = 1 

Query: 17  SASNLTSAYSHYQKEDPNERGGDGKRRGYKRAKAGGGRKKLKTQDHPQVPPPPGYIHVRA 76
           SAS   S  S + K+  ++  G  K RG KR ++    K++  ++ P+     GYIHVRA
Sbjct: 74  SASASFSFSSAHSKDSSSK--GSTKNRGGKRGRSS---KEVDEEEEPK-----GYIHVRA 133

Query: 77  RRGQATDRHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIEL 136
           RRGQATD HSLAERVRR++IS+RM+VLQ LVPGC KVTGKAL+LDEIINYVQSLQ+Q+E 
Sbjct: 134 RRGQATDSHSLAERVRRERISERMRVLQALVPGCDKVTGKALVLDEIINYVQSLQNQVEF 193

Query: 137 LSMELASVHPIRYDFGMDNPEVFIGTPVTQVLNG------------SGMVSR------SE 196
           LSM++AS+ P+ Y FGMD  + F     TQ + G            S  +SR      ++
Sbjct: 194 LSMKIASLSPVLYGFGMDTTDAFSTDHTTQKIEGMLQLHHEALAVPSSALSRPPFEAIAD 253

Query: 197 QAELAYNMASCNTFQATGGGGGGGDSPILTAENGSFI 216
                 + +S  +++  G GGGGG S     + G ++
Sbjct: 254 STHATASASSPRSYELHGDGGGGGASISFPQDGGGYM 280

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g09440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BH137_ARATH1.3e-3260.94Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1[more]
BH049_ARATH9.4e-3157.55Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=1 SV=1[more]
BH078_ARATH1.6e-3061.67Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=1 SV=1[more]
BH062_ARATH3.9e-2959.42Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1[more]
BH063_ARATH1.1e-2871.72Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=1 SV=1[more]
BLAST of Cp4.1LG18g09440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTX6_CUCSA5.9e-6466.81Uncharacterized protein OS=Cucumis sativus GN=Csa_1G000700 PE=4 SV=1[more]
E5GBM5_CUCME1.4e-4472.34BHLH transcription factor OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A0A068TQZ5_COFCA1.7e-3452.15Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00022830001 PE=4 SV=1[more]
B4FI37_MAIZE2.8e-3444.70BHLH transcription factor OS=Zea mays GN=bHLH23 PE=2 SV=1[more]
A0A096T1G8_MAIZE2.8e-3444.70Uncharacterized protein OS=Zea mays GN=LOC100194274 PE=4 SV=1[more]
BLAST of Cp4.1LG18g09440 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G50915.17.4e-3460.94 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT1G68920.15.3e-3257.55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT5G48560.19.0e-3261.67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT3G07340.12.2e-3059.42 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT4G34530.16.5e-3071.72 cryptochrome-interacting basic-helix-loop-helix 1[more]
BLAST of Cp4.1LG18g09440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778655231|ref|XP_004138026.2|8.4e-6466.81PREDICTED: transcription factor bHLH137-like [Cucumis sativus][more]
gi|659128812|ref|XP_008464382.1|6.0e-6264.10PREDICTED: transcription factor bHLH137-like [Cucumis melo][more]
gi|307136009|gb|ADN33865.1|2.0e-4472.34bHLH transcription factor [Cucumis melo subsp. melo][more]
gi|661898694|emb|CDO98661.1|2.4e-3452.15unnamed protein product [Coffea canephora][more]
gi|212721128|ref|NP_001132785.1|4.1e-3444.70putative HLH DNA-binding domain superfamily protein [Zea mays][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g09440.1Cp4.1LG18g09440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 81..143
score: 1.2
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 85..131
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainSMARTSM00353finuluscoord: 86..136
score: 2.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 80..130
score: 15
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 78..145
score: 3.14
NoneNo IPR availablePANTHERPTHR12565STEROL REGULATORY ELEMENT-BINDING PROTEINcoord: 67..155
score: 2.0
NoneNo IPR availablePANTHERPTHR12565:SF90TRANSCRIPTION FACTOR BHLH137coord: 67..155
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG18g09440Cucsa.157010Cucumber (Gy14) v1cgycpeB0420
Cp4.1LG18g09440CmaCh10G000290Cucurbita maxima (Rimu)cmacpeB080
Cp4.1LG18g09440CmaCh13G008280Cucurbita maxima (Rimu)cmacpeB227
Cp4.1LG18g09440CmaCh18G002970Cucurbita maxima (Rimu)cmacpeB428
Cp4.1LG18g09440CmoCh10G000260Cucurbita moschata (Rifu)cmocpeB055
Cp4.1LG18g09440CmoCh18G002370Cucurbita moschata (Rifu)cmocpeB389
Cp4.1LG18g09440CmoCh13G008580Cucurbita moschata (Rifu)cmocpeB194
Cp4.1LG18g09440Cla002643Watermelon (97103) v1cpewmB352
Cp4.1LG18g09440Cla019311Watermelon (97103) v1cpewmB373
Cp4.1LG18g09440Csa1G051740Cucumber (Chinese Long) v2cpecuB359
Cp4.1LG18g09440Csa1G000700Cucumber (Chinese Long) v2cpecuB361
Cp4.1LG18g09440MELO3C002383Melon (DHL92) v3.5.1cpemeB324
Cp4.1LG18g09440MELO3C026173Melon (DHL92) v3.5.1cpemeB328
Cp4.1LG18g09440ClCG03G003990Watermelon (Charleston Gray)cpewcgB325
Cp4.1LG18g09440ClCG06G018250Watermelon (Charleston Gray)cpewcgB336
Cp4.1LG18g09440CSPI01G00200Wild cucumber (PI 183967)cpecpiB361
Cp4.1LG18g09440CSPI01G09830Wild cucumber (PI 183967)cpecpiB359
Cp4.1LG18g09440Lsi02G005250Bottle gourd (USVL1VR-Ls)cpelsiB288
Cp4.1LG18g09440Lsi06G016720Bottle gourd (USVL1VR-Ls)cpelsiB298
Cp4.1LG18g09440MELO3C026173.2Melon (DHL92) v3.6.1cpemedB386
Cp4.1LG18g09440MELO3C002383.2Melon (DHL92) v3.6.1cpemedB381
Cp4.1LG18g09440CsaV3_1G009880Cucumber (Chinese Long) v3cpecucB0439
Cp4.1LG18g09440CsaV3_1G000190Cucumber (Chinese Long) v3cpecucB0442
Cp4.1LG18g09440Bhi08G001255Wax gourdcpewgoB0447
Cp4.1LG18g09440CsGy1G000190Cucumber (Gy14) v2cgybcpeB053
Cp4.1LG18g09440CsGy1G009850Cucumber (Gy14) v2cgybcpeB049
Cp4.1LG18g09440Carg06814Silver-seed gourdcarcpeB0695
Cp4.1LG18g09440Carg10252Silver-seed gourdcarcpeB0508
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG18g09440Cp4.1LG09g09490Cucurbita pepo (Zucchini)cpecpeB029
Cp4.1LG18g09440Cp4.1LG20g02900Cucurbita pepo (Zucchini)cpecpeB351
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG18g09440Cucurbita pepo (Zucchini)cpecpeB361
Cp4.1LG18g09440Cucurbita pepo (Zucchini)cpecpeB367
Cp4.1LG18g09440Cucurbita maxima (Rimu)cmacpeB130
Cp4.1LG18g09440Cucurbita maxima (Rimu)cmacpeB133
Cp4.1LG18g09440Cucurbita moschata (Rifu)cmocpeB109
Cp4.1LG18g09440Cucurbita moschata (Rifu)cmocpeB111
Cp4.1LG18g09440Cucumber (Gy14) v2cgybcpeB361
Cp4.1LG18g09440Silver-seed gourdcarcpeB0863
Cp4.1LG18g09440Cucumber (Chinese Long) v3cpecucB0457
Cp4.1LG18g09440Wax gourdcpewgoB0471