Cp4.1LG18g02110 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG18g02110
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG18 : 3753238 .. 3757031 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCACTTAAACGACGTCGTTGTGTTGTTCATCTACAGTGGAAATCTGATGCCCTAAACTTCCAAATCTGAAGCACCGTCGTCTGTTTCTCGATCGAAGATTTCAATTTCATCTTCAGACCCTAATTTCTTCTCTCTCTCTCTCTGCCGCCGATTCACTGTATCTTCAAGGTCTCTCTGTCTTCCAAGCGTTCGCACATTCACGCAACACTTTCAAATCTCGGTAAGCATATTTCTATAGTTACGTTGTATAGATCTATTCCCGCTTCGCTATTTTGAGGTAATTTTCACAATTTTTGACCTGTAATTTCATGTGCCATATGAGGTTTATCAAGTTAGAGTTTCTTGTTATGTGGTAGCTGAGTAGGTCGCTTACTGTTCTCGATTTCTGTACAAGGAAACAGTTTTGGATCAATTCAGTTGCCTTAAGAATTTGTAATTACATGTTAAAATAGTTTTGAGTGGTTCAATATTGTTCACTTTCACAGCTGTAGCGAGATTCTTAGACTGCGGGTCTCTGTCATTGGTTGCTGTGCAAATGAGGGGTAGGAGTTATACTCCATCACCGCCAAGGGGTTATGGAAGAAGGGGTCGGAGCCCTAGCCCTAGAGGGCGCTATGGGGGGGGACGTGGAAGAGACCTCCCCACTAGCCTTCTAGTTCGTAATCTTCGCCGTGACTGCAGGTTTGTTCTTGATGAGTATGTTATGTAGTTATGCTTATGTTTGTTATTTGTTTCTTATTGCCATGTTTCTTATTGCCCCAAAAGGTCTTTCGACCAATTTTCCTTTTCTAGAAAGTCTGTAGAAGGAGGGGGGTTGCTTTATTTTATTTTGTTTTGAGTCGATAATCTTTCTGTTACAAAGGAGCTTAGATAGGGGGAATAAGACATCACATAGTCTTAGGGAAATTGAAAAGTTCTCATCACATAGTCCTCTTTGGCCTTTCCCTTTCGGGCTTCCTTCCCCTCAAGCTTTTTAAAACGCATCTGCTAGGGAGAGGTCACACCTTTATAAAGAATGCTTCGTTTTCCTCCCCAACCGATGTGAGATCTCTCTCCCTCACAAAGTATTAGAATTCTACAATAATCATGAAATCTCTTATTCCAACAGCTATGAAAGAAACAAAATGAAATGGACCAAATAACTCTTTATAGTTCCTTTCATTGTCTTATAGGAGCCTAATATTTATTTGTAGCCTACGAAGTGTCTTAAGGCCGCTCCCTTCACTTGCAGCAAGGCACTCACCCCTCAAAAAGGCTTGCTGTGTTGTGCCTCGGGTTAATTGACTTGTTTTTCCCGTCGTTTTATGCCCTCCTTTGGAAAGCTATTGTTATATCTTTCAAGAATCTCGTGCAAATGCTCCCATATTTGTAAAAGTTTTTTTAAATGAAATTATGTTCATGATTCTGTTTGATTTTTGTATAAAATTGTGTGTTGTGCACTTTTGCGAACTTAGTTTTTCATAACTTCATTCTTAAGCATTGTAGAGTCGTTGCAGCCAAGCGTGCCTCACTTTAAAAACATTGTTCCACCCTAATACATAGGATGTATTCCACCACATTAGGTAGCCTTTTTTTTTTTTTTCCTTAGACAGAAGCCAAGTTATAGTAATTCAGTGGATCTTCTCCCTTGCGGTGCATCCATGATTCAGTTCTGACCTGCATCCATGAAATGAGATGAGTCTTTAGTGTCTGAATATAAGAATTTAATTTGGGTGCATTCTTGCATTGTCTTGTTCTGAATTGCAAGTTGCTTTGTGGAACTCTATGTAGTTTGAAATTAGTAATAGATTGATATATTACTGTTCGTGCTGCGGTACCAATTTTTTTACTACATATTGTTTTCTTAAAACACATTTACTGCATACTGCTATTCCTTCTTGCTTGCTGATCAAATATATTCAAGATGTTTAAAAAGCAATTTATAGTAAAAATATGATATAACCTGGTGTACCACTTATTAAAATTTATTTTTTGACACAGACCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCCATTAAGGACATATACCTACCAAAGGATTATCATACTGGGTGAGCATATCTGAGCTGTATGGTAGGATTTGCAGATTCGTGGGAAGTGTTTTTTTTTTTTAATTAGAAAAAAAATACAATTTTATACTTTGTGCATATGGTTTTTAAGTAATTCTGTAAATTTTATACAACGTTTTTAGTCTCTGTGATATAATATACTTAGTGGTATCGGAGAGAACATGTTTTCAATGATTTCCTTGCTTTCGAACAAAATGGTTTTAGCACAATCCATGAGAAACGTTTTTAGTCTCTATTGTGTTTCATCTTTCAAATTGTGCATCTGATGATAGAGGCATTTCTTTCTGGTTCTTTTGTTTTTTTGTTTTTTTCTTAAATCAAATATTAGGTCTGTTTATTGAACGTTTGAAGATTTAACAGTGAAAAATGTTTTGAAGAAGACATCAAGTAATTAGAGTTCTATTGAAGATGATGTTAATGGTAGTGAAGATTGGAAGGAAGTTGGATTTGAGTACATAGAAGATGTTCCCAAGTCTTTGAAGAATTTCAAGTCATCTTAAATCTGACACATGCAAGGTCAGCAGCCAAGTGCTTGCTTTATTATCACAGGCCTTCAATATTCCAAGGGATATGGTGGACAGTTTTATTAGAGAAGGTTTCTAGCAGGCCAAGTTCCTGACCTGATTCTGTGGCTTTACATTAACTTTTCTTTTATAACTTTCCCGTTTTTGCTTCTTTTGTGCAACAATTTTGCAGAGAACCACGTGGCTTCGGCTTCGTGCAATATGTAGATCCCGCTGATGCTGCAGATGCTAAGCATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGCTGACTGTGGTCTATGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGACGAGGGAGAGAGGAAGGTATGAAGCTGGCCTTGTATCAATTGTTTACAGTTCGGTATAGCATTTGTTAAACAAAATTAATATTTCAGTTTTATAAACAGTGGGCGATTTTATGATCGAAGAAGATCTCCTCCACGGTCTTCTCGTTCGCCACGATATTCTCGTTCCCCAGCTCCACGCCATGCAAGGTATTCTCGTTCACCTGCTCCGCGCCATGCAAGGTCTAGGTCCCGCAGTTATGACAATGCATCCCCGCCACCAAAACCAAGAGCTTACTCAAGGTATTCTTTCAATACATTGCTTGTTACATCCTAGTTCTTTATTCAGTCTGCTTGAGCCACAATTTTTTCTATATGTCAATGCAGATCCGCGTCCCCTCCTGACAGACGGAATAGTCGAGAGAGGTCTTTCCCACGACAGCCGAGCCGTGGTAGGTCATTCTCCCGATCTCCACGACTCGATGGTTCGAGAAGTAGAAGTCCGAGTCCAGCACGTGGCAGAAGTCGAAGTCCAAGCCCATTGAGAGGCTGAAGCCTGAGCATACCTGGAGCCGAAGTCCACGACAAATGGAGATGGGAGCCGAAGTCAACAGGAAAACAACTCGAAACTTGGACGAGAACAACTACAATGTACTATTGCCATTGTTTAGTTTGATATCTCCGCTATAGACATCATTTCGTCGTTTATATTGTTGTTCGGTAGCGTTCGTTCGTACTTAGGAATCTATGCGTTATCAAGAGTTTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNCCTGTTGTGGTGATGCATTACAATATATTTCAAGCTTTTCTATCATCATATTATCGACTTATTTAGATAATAAATAACGTAGTAAAAT

mRNA sequence

TCACTTAAACGACGTCGTTGTGTTGTTCATCTACAGTGGAAATCTGATGCCCTAAACTTCCAAATCTGAAGCACCGTCGTCTGTTTCTCGATCGAAGATTTCAATTTCATCTTCAGACCCTAATTTCTTCTCTCTCTCTCTCTGCCGCCGATTCACTGTATCTTCAAGGTCTCTCTGTCTTCCAAGCGTTCGCACATTCACGCAACACTTTCAAATCTCGCTGTAGCGAGATTCTTAGACTGCGGGTCTCTGTCATTGGTTGCTGTGCAAATGAGGGGTAGGAGTTATACTCCATCACCGCCAAGGGGTTATGGAAGAAGGGGTCGGAGCCCTAGCCCTAGAGGGCGCTATGGGGGGGGACGTGGAAGAGACCTCCCCACTAGCCTTCTAGTTCGTAATCTTCGCCGTGACTGCAGACCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCCATTAAGGACATATACCTACCAAAGGATTATCATACTGGAGAACCACGTGGCTTCGGCTTCGTGCAATATGTAGATCCCGCTGATGCTGCAGATGCTAAGCATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGCTGACTGTGGTCTATGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGACGAGGGAGAGAGGAAGTGGGCGATTTTATGATCGAAGAAGATCTCCTCCACGGTCTTCTCGTTCGCCACGATATTCTCGTTCCCCAGCTCCACGCCATGCAAGGTATTCTCGTTCACCTGCTCCGCGCCATGCAAGGTCTAGGTCCCGCAGTTATGACAATGCATCCCCGCCACCAAAACCAAGAGCTTACTCAAGATCCGCGTCCCCTCCTGACAGACGGAATAGTCGAGAGAGGTCTTTCCCACGACAGCCGAGCCGTGGTAGGTCATTCTCCCGATCTCCACGACTCGATGGTTCGAGAAGTAGAAGTCCGAGTCCAGCACGTGGCAGAAGTCGAAGTCCAAGCCCATTGAGAGGCTGAAGCCTGAGCATACCTGGAGCCGAAGTCCACGACAAATGGAGATGGGAGCCGAAGTCAACAGGAAAACAACTCGAAACTTGGACGAGAACAACTACAATGTACTATTGCCATTGTTTAGTTTGATATCTCCGCTATAGACATCATTTCGTCGTTTATATTGTTGTTCGGTAGCGTTCGTTCGTACTTAGGAATCTATGCGTTATCAAGAGTTTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNCCTGTTGTGGTGATGCATTACAATATATTTCAAGCTTTTCTATCATCATATTATCGACTTATTTAGATAATAAATAACGTAGTAAAAT

Coding sequence (CDS)

ATGATCGAAGAAGATCTCCTCCACGGTCTTCTCGTTCGCCACGATATTCTCGTTCCCCAGCTCCACGCCATGCAAGGTATTCTCGTTCACCTGCTCCGCGCCATGCAAGGTCTAGGTCCCGCAGTTATGACAATGCATCCCCGCCACCAAAACCAAGAGCTTACTCAAGATCCGCGTCCCCTCCTGACAGACGGAATAGTCGAGAGAGGTCTTTCCCACGACAGCCGAGCCGTGGTAGGTCATTCTCCCGATCTCCACGACTCGATGGTTCGAGAAGTAGAAGTCCGAGTCCAGCACGTGGCAGAAGTCGAAGTCCAAGCCCATTGA

Protein sequence

MIEEDLLHGLLVRHDILVPQLHAMQGILVHLLRAMQGLGPAVMTMHPRHQNQELTQDPRPLLTDGIVERGLSHDSRAVVGHSPDLHDSMVREVEVRVQHVAEVEVQAH
Homology
[Close]
BLAST of Cp4.1LG18g02110 vs. NCBI nr
Match: gi|778663892|ref|XP_011660179.1| (PREDICTED: uncharacterized protein LOC101222791 isoform X2 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.9e-27
Identity = 73/107 (68.22%), Postives = 80/107 (74.77%), Query Frame = 1 

Query: 1   MIEEDLLHGLLVRHDILVPQLHAMQGILVHLLRAMQGLGPAVMTMHPRHQNQELTQDPRP 60
           MIEED LH   VR DI VPQL+ + GILVH   AMQGLGP  M MHP HQN+ LTQD  P
Sbjct: 171 MIEEDPLH---VRLDIHVPQLNDVGGILVHQHHAMQGLGPVAMIMHPNHQNKGLTQDHFP 230

Query: 61  LLTDGIVERGLSHDSRAVVGHSPDLHDSMVREVEVRVQHVAEVEVQA 108
           L+TD  VERGLSHD RAV GH+PDLH SMV+ V V+VQH  EVEVQA
Sbjct: 231 LVTDQTVERGLSHDRRAVEGHTPDLHVSMVQGVGVKVQHNLEVEVQA 274

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g02110 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g02110 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g02110 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g02110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778663892|ref|XP_011660179.1|2.9e-2768.22PREDICTED: uncharacterized protein LOC101222791 isoform X2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG18g02110.1Cp4.1LG18g02110.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG18g02110Carg25971Silver-seed gourdcarcpeB1239
Cp4.1LG18g02110Carg17842Silver-seed gourdcarcpeB1341
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG18g02110Cucumber (Gy14) v1cgycpeB0928
Cp4.1LG18g02110Cucurbita maxima (Rimu)cmacpeB080
Cp4.1LG18g02110Cucurbita maxima (Rimu)cmacpeB126
Cp4.1LG18g02110Cucurbita maxima (Rimu)cmacpeB632
Cp4.1LG18g02110Cucurbita moschata (Rifu)cmocpeB055
Cp4.1LG18g02110Cucurbita moschata (Rifu)cmocpeB104
Cp4.1LG18g02110Cucurbita moschata (Rifu)cmocpeB581
Cp4.1LG18g02110Wild cucumber (PI 183967)cpecpiB350
Cp4.1LG18g02110Cucumber (Chinese Long) v2cpecuB349
Cp4.1LG18g02110Bottle gourd (USVL1VR-Ls)cpelsiB299
Cp4.1LG18g02110Watermelon (Charleston Gray)cpewcgB327
Cp4.1LG18g02110Watermelon (97103) v1cpewmB356
Cp4.1LG18g02110Melon (DHL92) v3.5.1cpemeB329
Cp4.1LG18g02110Cucumber (Gy14) v2cgybcpeB039
Cp4.1LG18g02110Melon (DHL92) v3.6.1cpemedB387
Cp4.1LG18g02110Cucumber (Chinese Long) v3cpecucB0428
Cp4.1LG18g02110Wax gourdcpewgoB0468
Cp4.1LG18g02110Cucurbita pepo (Zucchini)cpecpeB363
Cp4.1LG18g02110Cucurbita pepo (Zucchini)cpecpeB369