Cp4.1LG18g02110.1 (mRNA) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG18g02110.1
TypemRNA
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG18 : 3753238 .. 3757031 (+)
Sequence length1349
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCACTTAAACGACGTCGTTGTGTTGTTCATCTACAGTGGAAATCTGATGCCCTAAACTTCCAAATCTGAAGCACCGTCGTCTGTTTCTCGATCGAAGATTTCAATTTCATCTTCAGACCCTAATTTCTTCTCTCTCTCTCTCTGCCGCCGATTCACTGTATCTTCAAGGTCTCTCTGTCTTCCAAGCGTTCGCACATTCACGCAACACTTTCAAATCTCGGTAAGCATATTTCTATAGTTACGTTGTATAGATCTATTCCCGCTTCGCTATTTTGAGGTAATTTTCACAATTTTTGACCTGTAATTTCATGTGCCATATGAGGTTTATCAAGTTAGAGTTTCTTGTTATGTGGTAGCTGAGTAGGTCGCTTACTGTTCTCGATTTCTGTACAAGGAAACAGTTTTGGATCAATTCAGTTGCCTTAAGAATTTGTAATTACATGTTAAAATAGTTTTGAGTGGTTCAATATTGTTCACTTTCACAGCTGTAGCGAGATTCTTAGACTGCGGGTCTCTGTCATTGGTTGCTGTGCAAATGAGGGGTAGGAGTTATACTCCATCACCGCCAAGGGGTTATGGAAGAAGGGGTCGGAGCCCTAGCCCTAGAGGGCGCTATGGGGGGGGACGTGGAAGAGACCTCCCCACTAGCCTTCTAGTTCGTAATCTTCGCCGTGACTGCAGGTTTGTTCTTGATGAGTATGTTATGTAGTTATGCTTATGTTTGTTATTTGTTTCTTATTGCCATGTTTCTTATTGCCCCAAAAGGTCTTTCGACCAATTTTCCTTTTCTAGAAAGTCTGTAGAAGGAGGGGGGTTGCTTTATTTTATTTTGTTTTGAGTCGATAATCTTTCTGTTACAAAGGAGCTTAGATAGGGGGAATAAGACATCACATAGTCTTAGGGAAATTGAAAAGTTCTCATCACATAGTCCTCTTTGGCCTTTCCCTTTCGGGCTTCCTTCCCCTCAAGCTTTTTAAAACGCATCTGCTAGGGAGAGGTCACACCTTTATAAAGAATGCTTCGTTTTCCTCCCCAACCGATGTGAGATCTCTCTCCCTCACAAAGTATTAGAATTCTACAATAATCATGAAATCTCTTATTCCAACAGCTATGAAAGAAACAAAATGAAATGGACCAAATAACTCTTTATAGTTCCTTTCATTGTCTTATAGGAGCCTAATATTTATTTGTAGCCTACGAAGTGTCTTAAGGCCGCTCCCTTCACTTGCAGCAAGGCACTCACCCCTCAAAAAGGCTTGCTGTGTTGTGCCTCGGGTTAATTGACTTGTTTTTCCCGTCGTTTTATGCCCTCCTTTGGAAAGCTATTGTTATATCTTTCAAGAATCTCGTGCAAATGCTCCCATATTTGTAAAAGTTTTTTTAAATGAAATTATGTTCATGATTCTGTTTGATTTTTGTATAAAATTGTGTGTTGTGCACTTTTGCGAACTTAGTTTTTCATAACTTCATTCTTAAGCATTGTAGAGTCGTTGCAGCCAAGCGTGCCTCACTTTAAAAACATTGTTCCACCCTAATACATAGGATGTATTCCACCACATTAGGTAGCCTTTTTTTTTTTTTTCCTTAGACAGAAGCCAAGTTATAGTAATTCAGTGGATCTTCTCCCTTGCGGTGCATCCATGATTCAGTTCTGACCTGCATCCATGAAATGAGATGAGTCTTTAGTGTCTGAATATAAGAATTTAATTTGGGTGCATTCTTGCATTGTCTTGTTCTGAATTGCAAGTTGCTTTGTGGAACTCTATGTAGTTTGAAATTAGTAATAGATTGATATATTACTGTTCGTGCTGCGGTACCAATTTTTTTACTACATATTGTTTTCTTAAAACACATTTACTGCATACTGCTATTCCTTCTTGCTTGCTGATCAAATATATTCAAGATGTTTAAAAAGCAATTTATAGTAAAAATATGATATAACCTGGTGTACCACTTATTAAAATTTATTTTTTGACACAGACCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCCATTAAGGACATATACCTACCAAAGGATTATCATACTGGGTGAGCATATCTGAGCTGTATGGTAGGATTTGCAGATTCGTGGGAAGTGTTTTTTTTTTTTAATTAGAAAAAAAATACAATTTTATACTTTGTGCATATGGTTTTTAAGTAATTCTGTAAATTTTATACAACGTTTTTAGTCTCTGTGATATAATATACTTAGTGGTATCGGAGAGAACATGTTTTCAATGATTTCCTTGCTTTCGAACAAAATGGTTTTAGCACAATCCATGAGAAACGTTTTTAGTCTCTATTGTGTTTCATCTTTCAAATTGTGCATCTGATGATAGAGGCATTTCTTTCTGGTTCTTTTGTTTTTTTGTTTTTTTCTTAAATCAAATATTAGGTCTGTTTATTGAACGTTTGAAGATTTAACAGTGAAAAATGTTTTGAAGAAGACATCAAGTAATTAGAGTTCTATTGAAGATGATGTTAATGGTAGTGAAGATTGGAAGGAAGTTGGATTTGAGTACATAGAAGATGTTCCCAAGTCTTTGAAGAATTTCAAGTCATCTTAAATCTGACACATGCAAGGTCAGCAGCCAAGTGCTTGCTTTATTATCACAGGCCTTCAATATTCCAAGGGATATGGTGGACAGTTTTATTAGAGAAGGTTTCTAGCAGGCCAAGTTCCTGACCTGATTCTGTGGCTTTACATTAACTTTTCTTTTATAACTTTCCCGTTTTTGCTTCTTTTGTGCAACAATTTTGCAGAGAACCACGTGGCTTCGGCTTCGTGCAATATGTAGATCCCGCTGATGCTGCAGATGCTAAGCATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGCTGACTGTGGTCTATGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGACGAGGGAGAGAGGAAGGTATGAAGCTGGCCTTGTATCAATTGTTTACAGTTCGGTATAGCATTTGTTAAACAAAATTAATATTTCAGTTTTATAAACAGTGGGCGATTTTATGATCGAAGAAGATCTCCTCCACGGTCTTCTCGTTCGCCACGATATTCTCGTTCCCCAGCTCCACGCCATGCAAGGTATTCTCGTTCACCTGCTCCGCGCCATGCAAGGTCTAGGTCCCGCAGTTATGACAATGCATCCCCGCCACCAAAACCAAGAGCTTACTCAAGGTATTCTTTCAATACATTGCTTGTTACATCCTAGTTCTTTATTCAGTCTGCTTGAGCCACAATTTTTTCTATATGTCAATGCAGATCCGCGTCCCCTCCTGACAGACGGAATAGTCGAGAGAGGTCTTTCCCACGACAGCCGAGCCGTGGTAGGTCATTCTCCCGATCTCCACGACTCGATGGTTCGAGAAGTAGAAGTCCGAGTCCAGCACGTGGCAGAAGTCGAAGTCCAAGCCCATTGAGAGGCTGAAGCCTGAGCATACCTGGAGCCGAAGTCCACGACAAATGGAGATGGGAGCCGAAGTCAACAGGAAAACAACTCGAAACTTGGACGAGAACAACTACAATGTACTATTGCCATTGTTTAGTTTGATATCTCCGCTATAGACATCATTTCGTCGTTTATATTGTTGTTCGGTAGCGTTCGTTCGTACTTAGGAATCTATGCGTTATCAAGAGTTTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNCCTGTTGTGGTGATGCATTACAATATATTTCAAGCTTTTCTATCATCATATTATCGACTTATTTAGATAATAAATAACGTAGTAAAAT

mRNA sequence

TCACTTAAACGACGTCGTTGTGTTGTTCATCTACAGTGGAAATCTGATGCCCTAAACTTCCAAATCTGAAGCACCGTCGTCTGTTTCTCGATCGAAGATTTCAATTTCATCTTCAGACCCTAATTTCTTCTCTCTCTCTCTCTGCCGCCGATTCACTGTATCTTCAAGGTCTCTCTGTCTTCCAAGCGTTCGCACATTCACGCAACACTTTCAAATCTCGCTGTAGCGAGATTCTTAGACTGCGGGTCTCTGTCATTGGTTGCTGTGCAAATGAGGGGTAGGAGTTATACTCCATCACCGCCAAGGGGTTATGGAAGAAGGGGTCGGAGCCCTAGCCCTAGAGGGCGCTATGGGGGGGGACGTGGAAGAGACCTCCCCACTAGCCTTCTAGTTCGTAATCTTCGCCGTGACTGCAGACCTGAGGATCTTCGTAGACCATTTGGACAGTTTGGTGCCATTAAGGACATATACCTACCAAAGGATTATCATACTGGAGAACCACGTGGCTTCGGCTTCGTGCAATATGTAGATCCCGCTGATGCTGCAGATGCTAAGCATCAGATGGATGGCTGTGTTCTTCTCGGTCGGGAGCTGACTGTGGTCTATGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGACGAGGGAGAGAGGAAGTGGGCGATTTTATGATCGAAGAAGATCTCCTCCACGGTCTTCTCGTTCGCCACGATATTCTCGTTCCCCAGCTCCACGCCATGCAAGGTATTCTCGTTCACCTGCTCCGCGCCATGCAAGGTCTAGGTCCCGCAGTTATGACAATGCATCCCCGCCACCAAAACCAAGAGCTTACTCAAGATCCGCGTCCCCTCCTGACAGACGGAATAGTCGAGAGAGGTCTTTCCCACGACAGCCGAGCCGTGGTAGGTCATTCTCCCGATCTCCACGACTCGATGGTTCGAGAAGTAGAAGTCCGAGTCCAGCACGTGGCAGAAGTCGAAGTCCAAGCCCATTGAGAGGCTGAAGCCTGAGCATACCTGGAGCCGAAGTCCACGACAAATGGAGATGGGAGCCGAAGTCAACAGGAAAACAACTCGAAACTTGGACGAGAACAACTACAATGTACTATTGCCATTGTTTAGTTTGATATCTCCGCTATAGACATCATTTCGTCGTTTATATTGTTGTTCGGTAGCGTTCGTTCGTACTTAGGAATCTATGCGTTATCAAGAGTTTGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNCCTGTTGTGGTGATGCATTACAATATATTTCAAGCTTTTCTATCATCATATTATCGACTTATTTAGATAATAAATAACGTAGTAAAAT

Coding sequence (CDS)

ATGATCGAAGAAGATCTCCTCCACGGTCTTCTCGTTCGCCACGATATTCTCGTTCCCCAGCTCCACGCCATGCAAGGTATTCTCGTTCACCTGCTCCGCGCCATGCAAGGTCTAGGTCCCGCAGTTATGACAATGCATCCCCGCCACCAAAACCAAGAGCTTACTCAAGATCCGCGTCCCCTCCTGACAGACGGAATAGTCGAGAGAGGTCTTTCCCACGACAGCCGAGCCGTGGTAGGTCATTCTCCCGATCTCCACGACTCGATGGTTCGAGAAGTAGAAGTCCGAGTCCAGCACGTGGCAGAAGTCGAAGTCCAAGCCCATTGA

Protein sequence

MIEEDLLHGLLVRHDILVPQLHAMQGILVHLLRAMQGLGPAVMTMHPRHQNQELTQDPRPLLTDGIVERGLSHDSRAVVGHSPDLHDSMVREVEVRVQHVAEVEVQAH
Homology
[Close]
BLAST of Cp4.1LG18g02110.1 vs. NCBI nr
Match: gi|778663892|ref|XP_011660179.1| (PREDICTED: uncharacterized protein LOC101222791 isoform X2 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.9e-27
Identity = 73/107 (68.22%), Postives = 80/107 (74.77%), Query Frame = 1 

Query: 1   MIEEDLLHGLLVRHDILVPQLHAMQGILVHLLRAMQGLGPAVMTMHPRHQNQELTQDPRP 60
           MIEED LH   VR DI VPQL+ + GILVH   AMQGLGP  M MHP HQN+ LTQD  P
Sbjct: 171 MIEEDPLH---VRLDIHVPQLNDVGGILVHQHHAMQGLGPVAMIMHPNHQNKGLTQDHFP 230

Query: 61  LLTDGIVERGLSHDSRAVVGHSPDLHDSMVREVEVRVQHVAEVEVQA 108
           L+TD  VERGLSHD RAV GH+PDLH SMV+ V V+VQH  EVEVQA
Sbjct: 231 LVTDQTVERGLSHDRRAVEGHTPDLHVSMVQGVGVKVQHNLEVEVQA 274

The following BLAST results are available for this feature:
BLAST of Cp4.1LG18g02110.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g02110.1 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g02110.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG18g02110.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778663892|ref|XP_011660179.1|2.9e-2768.22PREDICTED: uncharacterized protein LOC101222791 isoform X2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cp4.1LG18g02110Cp4.1LG18g02110gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cp4.1LG18g02110.1Cp4.1LG18g02110.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG18g02110.1:five_prime_utr:001Cp4.1LG18g02110.1:five_prime_utr:001five_prime_UTR
Cp4.1LG18g02110.1:five_prime_utr:002Cp4.1LG18g02110.1:five_prime_utr:002five_prime_UTR
Cp4.1LG18g02110.1:five_prime_utr:003Cp4.1LG18g02110.1:five_prime_utr:003five_prime_UTR
Cp4.1LG18g02110.1:five_prime_utr:004Cp4.1LG18g02110.1:five_prime_utr:004five_prime_UTR
Cp4.1LG18g02110.1:five_prime_utr:005Cp4.1LG18g02110.1:five_prime_utr:005five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG18g02110.1:cds:001Cp4.1LG18g02110.1:cds:001CDS
Cp4.1LG18g02110.1:cds:002Cp4.1LG18g02110.1:cds:002CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cp4.1LG18g02110.1:three_prime_utr:001Cp4.1LG18g02110.1:three_prime_utr:001three_prime_UTR