Carg25971 (gene) Silver-seed gourd

Overview
NameCarg25971
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionUnknown protein
LocationCucurbita_argyrosperma_scaffold_311 : 19576 .. 20132 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGTAGAAGATCTCCTCCACGGTATTCTCGTTCTCCTCCTCAACGCCATGCAAGGCGTTCTTTTTCACCAGCTCCACGCCATGCAAGGTCTCGGTCTCGCAGTTATGATTATGCATCCCCCCCACCAAGACAAAGGGCGTACTCCAGGTGTGATTTCAATTTATTAGCTATTTGATCTCTAGTTCTGTTTTTTTTTTTCTAGTATAATTTCTATGATTCCCTTTGGTAACTACATTTTGAGCTTCAAGTCTTTCATTATGTCAAATGCAGATCCATATCCCCGTCTCCACGTGGCAGACGGGATAGTCGAGAGAGGTCCTACCCACGACAGCCAAGCCGTGGTAGGTCATACTCCCGATCCCCACAACTTGGTAGTGCAAGAAGTAGAAGTAGAAGTAGAAGTCAGAGTCCAGCACCACGGGGCGGAAGTCGAAGTCCAAGCCCTGTGAGAGGCCGAAGGCTGAGTAGGAGCAGGAGCAGGAGCCGAAGCATTAGCCGGAGCCGGAGTCCACGACATAGTTCAAGACACGAAGAGGAGTATAGAAGTGAACTG

mRNA sequence

ATGATCGTAGAAGATCTCCTCCACGGTATTCTCGTTCTCCTCCTCAACGCCATGCAAGGCGTTCTTTTTCACCAGCTCCACGCCATGCAAGGTCTCGGTCTCGCAGTTATGATTATGCATCCCCCCCACCAAGACAAAGGGCGTACTCCAGATCCATATCCCCGTCTCCACGTGGCAGACGGGATAGTCGAGAGAGGTCCTACCCACGACAGCCAAGCCGTGGTAGGTCATACTCCCGATCCCCACAACTTGGTAGTGCAAGAAGTAGAAGTAGAAGTAGAAGTCAGAGTCCAGCACCACGGGGCGGAAGTCGAAGTCCAAGCCCTGTGAGAGGCCGAAGGCTGAGTAGGAGCAGGAGCAGGAGCCGAAGCATTAGCCGGAGCCGGAGTCCACGACATAGTTCAAGACACGAAGAGGAGTATAGAAGTGAACTG

Coding sequence (CDS)

ATGATCGTAGAAGATCTCCTCCACGGTATTCTCGTTCTCCTCCTCAACGCCATGCAAGGCGTTCTTTTTCACCAGCTCCACGCCATGCAAGGTCTCGGTCTCGCAGTTATGATTATGCATCCCCCCCACCAAGACAAAGGGCGTACTCCAGATCCATATCCCCGTCTCCACGTGGCAGACGGGATAGTCGAGAGAGGTCCTACCCACGACAGCCAAGCCGTGGTAGGTCATACTCCCGATCCCCACAACTTGGTAGTGCAAGAAGTAGAAGTAGAAGTAGAAGTCAGAGTCCAGCACCACGGGGCGGAAGTCGAAGTCCAAGCCCTGTGA

Protein sequence

MIVEDLLHGILVLLLNAMQGVLFHQLHAMQGLGLAVMIMHPPHQDKGRTPDPYPRLHVADGIVERGPTHDSQAVVGHTPDPHNLVVQEVEVEVEVRVQHHGAEVEVQAL
Homology
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BLAST of Carg25971 vs. NCBI nr
Match: XP_011660179.1 (PREDICTED: uncharacterized protein LOC101222791 isoform X2 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 51/112 (45.54%), Postives = 57/112 (50.89%), Query Frame = 0 

Query: 1   MIVEDLLH---GILVLLLNAMQXXXXXXXXXXXXLGLAVMIMHPPHQDKGRTPDPYPRLH 60
           MI ED LH    I V  LN +             LG   MIMHP HQ+KG T D +P   
Sbjct: 171 MIEEDPLHVRLDIHVPQLNDVGGILVHQHHAMQGLGPVAMIMHPNHQNKGLTQDHFPL-- 230

Query: 61  VADGIVERGPTHDSQAVVGHTPDPHNLVVQEVXXXXXXXXXHHGAEVEVQAL 110
           V D  VERG +HD +AV GHTPD H  +VQ V          H  EVEVQAL
Sbjct: 231 VTDQTVERGLSHDRRAVEGHTPDLHVSMVQGV-----GVKVQHNLEVEVQAL 275

The following BLAST results are available for this feature:
BLAST of Carg25971 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011660179.11.5e-0845.54PREDICTED: uncharacterized protein LOC101222791 isoform X2 [Cucumis sativus][more]
BLAST of Carg25971 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Carg25971 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg25971 vs. TrEMBL
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25971-RACarg25971-RAmRNA