Cp4.1LG17g10870 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG17g10870
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA-binding region RNP-1 protein
Location	Cp4.1LG17 : 8296896 .. 8299707 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTGGGATCGTTTCAGTTCTCTTCTGCGTACTTTTATTTCATTTATCCTCACTGACAGCCATTGGAGGAGACCCCACTACCTCCACCTTTTTTCATCAAATTCATCTCCATTTCTCCACGCTCCGCTCCTCCATTTTTTGTTCTACTGCTACAGGCTCATGCCCCTCGCTCACCGTTGCTCATCTCGTTTCTTCGATTTGGACTAGTAAGATTCACGCTCTAATCTTTGATTTCCTGCTTTACTTTACTGGCTTCTTTGATTTATTCTCCATTGAGAGTCTCTCTCCTTGTGATTTCTAAATTAGTCGCCGCCATCTCGTTATATTGTGTTTGTTATTCTTTTTCTCATGTTTTTCTGGGATTTAAGCACAACAATGAACAGGTTCGAAATGTTCTCTATGAGATGGGTTGTGATTTAGATAGGTGACTTGATTGCACTCTATATGGTCCTCATATTGCTTGCAAATGTGAGAAAAAAACAATGGAGATGGAAAGAAATGATTGATGGGCTGTGATTTGTTCTGGAAATAACAGAAGTATCGGTTTAGAGAAGCGCACTTAGCTTGAGATTATCAGTGTGTGTATGTGTGGCCTTAGTCTGGGCCTAATCCTGGGTGCATATCTTAATTGGGTTGCAGCCAACTTCAAAACTCCAAAATCTTGATCTTGTGAGATGAAATTAGGGACAAAGAAGGATTTGTTTTGCTTTTCTTTCTGTAAAAGGTTATACAACCTCTTAGGAGTATTTGGTTAATCCAGAAAATGGTTGTAACCTTGGAGCATGGGGCCATTTCTTCATGCCAAAAGTTTGCTTCTAATGAAGTTTTTCCAACTATTAAATGTAGGTCTGGTAGGTTTGTTGCCGCCTTAGGATTGATCAGTATCTAGCGTAGGGTTTACGGACATAAATTGCTAAGTTACAAATAGTTAACCTATTCACATAAGACATGGTTTCAACCTAAAATGTAACCGCCCAAGTCCACCGCTAGCAAATATTGTCCTCTTTGAAATTTCCTTCCCGGACTCCCCTCAAGGTTTTAAAATGTGTCCTTGTGTCCATTGCTTGGGCTTTAAAAACCTTGAGGAGAAGCCGGCTTTGGCTATTACAAATGGTATCAAAGCTAGACACCGAGCTGTGTGCCAGCAAGAACGTTGGGCTCTGATTGGGGGTGGATTGTGAGATCCCACATCGATTAGAAAGAGGAACGAGTGCCAGCAAGGACGCTGAGTCCCGAAGGGGGTGGATTGTGAGATCCCAAATTGGTTGGAGAGGGAACAAAGCATTCCTTATAAGGGTGTGGAAACTTCTCCCTAGTAGACGTGTTTTAAAACTGTGAGGCTGATGGCGATACGTAACGGGCTAAAGTGGACAATATCTGTTAGCGGTGGGCTTGGACTGTTGTATAAAAGTTGTTGTATCAGTAACCTAAGCACATCTAATTGGTTAAAAGATCTATTAATTTCCTTGAGGTGAATCAAATTCCAATCATACAGTGTGTACTCTTTCGTGTTGTTTTTTTGATACTGTAATTATCTTAGTTTACAGTAAACAATTATGCTAACTCCTTTAATGGGTATATTAGGTTCTTTATCATCCCACATGGGATCAGCTACGGATGAACAATATGCCAAGTTTGAGGAAAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTTTTGAGAACCGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATTCCAAATTTCACGGAGCCAATTAATAGCTCGCAATGTGCTTTAGTCGAGATGAAGGACTCGAAGGAGGCAAATTCTGTCATCTCTGTGATAGCTCAGTTCCCTTTCATGATGTCTGGAATGCCAAGACCGGTGAGGGCGTACCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTATAAAGCCCGGTAGGAAGATTAGCTTTGTCTGGTTGGGGAAGGATGATCCTGACTTTGAAGTGGCAAAGAAAATGAAGTGTCTTACTCAGAGGCATGTCGCTGAAGCTGCATTCTTGCTGAAGGTATGAGTTTCAAAATCCCATCCCCCCCCCCCCCCCCCCCCTTNATTTTGTAGGTCTCTAATATTATTCCCATCGGTTTAACGTTTATACCATGAAATCAACGCTTCGGTGTGCCGCTCAGGTGTTAAACTGGTGGAGTCGACGAGACATACAAGACACAAAACTAAAAATTTAGAGGCAACTTTTAAATTATAAAGATGAAACATACTCGAGGTTGAAAGTTCAAGGATCTATTAGAAAACTTTTAGAGTAGGACTAAAAGTCGAGGGATCGAACTTGAAATTTAGCCTTGTGAAATAGTGTTCTTAACAAAGGTTCCTCCCATTCTCTTGCAGCAACAGTTGGTGGAAGAGGAGAAGCTTGCAAAGCAGCAGCAAGATGCACTGAAAGCAAACTACAAGAAATATGAGATCGTTGAAGGTGTAATGACTGATGGAACTGCCCGCAGGTTAGCAAGGCGTTATAATATGCGTGTTGCAGATGATTAATTGCATGCTTTGAAGCTTTTGTTTTTTGCACTCCTAATTGCCTGATCACGTAAATTTTGTACAAATTATCACTTAGATGGCCTTATAGAGATTAATTAGAGAATTCTGTTGTGATTTAGAGGGAGAAGGATAGTTAATTAGTGTAATACTCCTATTATTACTCTTTTGGATTCGTCTCTTGTTTGGGAAATGACTTCGGTTTAAAATCATCTAAAGACATTCGTTCCTACAAGAGCTTGAGAACGGACAAATGCATAGGTCGAACACCTCAAAGAA

mRNA sequence

TGTTGGGATCGTTTCAGTTCTCTTCTGCGTACTTTTATTTCATTTATCCTCACTGACAGCCATTGGAGGAGACCCCACTACCTCCACCTTTTTTCATCAAATTCATCTCCATTTCTCCACGCTCCGCTCCTCCATTTTTTGTTCTACTGCTACAGGCTCATGCCCCTCGCTCACCGTTGCTCATCTCGTTTCTTCGATTTGGACTAGTTCTTTATCATCCCACATGGGATCAGCTACGGATGAACAATATGCCAAGTTTGAGGAAAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTTTTGAGAACCGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATTCCAAATTTCACGGAGCCAATTAATAGCTCGCAATGTGCTTTAGTCGAGATGAAGGACTCGAAGGAGGCAAATTCTGTCATCTCTGTGATAGCTCAGTTCCCTTTCATGATGTCTGGAATGCCAAGACCGGTGAGGGCGTACCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTATAAAGCCCGGTAGGAAGATTAGCTTTGTCTGGTTGGGGAAGGATGATCCTGACTTTGAAGTGGCAAAGAAAATGAAGTGTCTTACTCAGAGGCATGTCGCTGAAGCTGCATTCTTGCTGAAGCAACAGTTGGTGGAAGAGGAGAAGCTTGCAAAGCAGCAGCAAGATGCACTGAAAGCAAACTACAAGAAATATGAGATCGTTGAAGGTGTAATGACTGATGGAACTGCCCGCAGGTTAGCAAGGCGTTATAATATGCGTGTTGCAGATGATTAATTGCATGCTTTGAAGCTTTTGTTTTTTGCACTCCTAATTGCCTGATCACGTAAATTTTGTACAAATTATCACTTAGATGGCCTTATAGAGATTAATTAGAGAATTCTGTTGTGATTTAGAGGGAGAAGGATAGTTAATTAGTGTAATACTCCTATTATTACTCTTTTGGATTCGTCTCTTGTTTGGGAAATGACTTCGGTTTAAAATCATCTAAAGACATTCGTTCCTACAAGAGCTTGAGAACGGACAAATGCATAGGTCGAACACCTCAAAGAA

Coding sequence (CDS)

ATGGGATCAGCTACGGATGAACAATATGCCAAGTTTGAGGAAAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTTTTGAGAACCGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATTCCAAATTTCACGGAGCCAATTAATAGCTCGCAATGTGCTTTAGTCGAGATGAAGGACTCGAAGGAGGCAAATTCTGTCATCTCTGTGATAGCTCAGTTCCCTTTCATGATGTCTGGAATGCCAAGACCGGTGAGGGCGTACCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTATAAAGCCCGGTAGGAAGATTAGCTTTGTCTGGTTGGGGAAGGATGATCCTGACTTTGAAGTGGCAAAGAAAATGAAGTGTCTTACTCAGAGGCATGTCGCTGAAGCTGCATTCTTGCTGAAGCAACAGTTGGTGGAAGAGGAGAAGCTTGCAAAGCAGCAGCAAGATGCACTGAAAGCAAACTACAAGAAATATGAGATCGTTGAAGGTGTAATGACTGATGGAACTGCCCGCAGGTTAGCAAGGCGTTATAATATGCGTGTTGCAGATGATTAA

Protein sequence

MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSSQCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWLGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVMTDGTARRLARRYNMRVADD

Homology

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BLAST of Cp4.1LG17g10870 vs. TrEMBL
Match: A0A0A0KAE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013320 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 6.4e-88
Identity = 165/199 (82.91%), Postives = 182/199 (91.46%), Query Frame = 1


Query: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60
           MGS  DEQ+A FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120
           QCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAEVEMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180
             DDPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LK NYKKYEIV+ VM
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180

Query: 181 TDGTARRLARRYNMRVADD 200
            DGTARRLA+ YNMR++DD
Sbjct: 181 ADGTARRLAKHYNMRISDD 199

[Close]

BLAST of Cp4.1LG17g10870 vs. TrEMBL
Match: A0A061EIN5_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_020046 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.6e-70
Identity = 137/199 (68.84%), Postives = 161/199 (80.90%), Query Frame = 1


Query: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60
           MGSA   +YA FEEKV+RTVY+DNLSP VTE V+RTALDQ+GTV SVHFIPN+ EP N  
Sbjct: 1   MGSAEQGEYAAFEEKVRRTVYMDNLSPNVTESVVRTALDQYGTVKSVHFIPNYLEPQNIP 60

Query: 61  QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120
           QCALVEM+  K+   VIS I+QFPFMMSGMPRPVRA  A+VEMF DRP +PGR+I F WL
Sbjct: 61  QCALVEMETGKQVEVVISTISQFPFMMSGMPRPVRARAAKVEMFSDRPRQPGRRIHFRWL 120

Query: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180
              DPDFEVA K+K L +RH  E A +LK QL +EEKLAKQQ +ALKANYKKYE+++ +M
Sbjct: 121 DPADPDFEVANKLKHLAKRHATETAVMLKHQLEKEEKLAKQQGEALKANYKKYEMIDSLM 180

Query: 181 TDGTARRLARRYNMRVADD 200
            DGTARRLARRY++RV+DD
Sbjct: 181 ADGTARRLARRYDLRVSDD 199

[Close]

BLAST of Cp4.1LG17g10870 vs. TrEMBL
Match: D7SWK8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03120 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.3e-69
Identity = 130/199 (65.33%), Postives = 158/199 (79.40%), Query Frame = 1


Query: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60
           M S    +YA FE+KVKR VY+DN+SPQVT+ VL+TAL+QFGTVVS+HFIPN+ EP    
Sbjct: 61  MESPAQNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIP 120

Query: 61  QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120
           +CALVEM    EA ++IS +  +PFMMSGMPRP RA PAEVEMFDDRPIKPGR+I   WL
Sbjct: 121 RCALVEMAKQSEAEAIISDMNNYPFMMSGMPRPARARPAEVEMFDDRPIKPGRRIQCRWL 180

Query: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180
            K+DPDFEVAKK+K L ++H +EA+F+LK QL EEEKLAKQQ + LK NYKKYE+++ V+
Sbjct: 181 DKEDPDFEVAKKLKHLVRKHASEASFMLKNQLEEEEKLAKQQAEVLKTNYKKYEMIDSVL 240

Query: 181 TDGTARRLARRYNMRVADD 200
            DG ARRLAR YN  V+DD
Sbjct: 241 ADGAARRLARHYNFNVSDD 259

[Close]

BLAST of Cp4.1LG17g10870 vs. TrEMBL
Match: V4TX22_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022331mg PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.0e-69
Identity = 130/199 (65.33%), Postives = 165/199 (82.91%), Query Frame = 1


Query: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60
           MGS T+ +YA F EKVKRTVY+DNLSPQVTEPV+RTALDQFG V +V FIPN+TE  N  
Sbjct: 1   MGSTTEAEYAAFLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIP 60

Query: 61  QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120
            CALVEM++SK+A  V++ + +FPFMMSGMPRPVRA  AEVEMFDDRP KPG++I F WL
Sbjct: 61  HCALVEMENSKQAKDVVTSLHEFPFMMSGMPRPVRARAAEVEMFDDRPAKPGQRIQFRWL 120

Query: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180
             +DPDFEVA+++K L ++H AEA+F+LK+QL +EE+LA QQ++ LK NY+KYE +EG+M
Sbjct: 121 DPNDPDFEVAQRLKRLARKHAAEASFVLKEQLEQEEQLANQQEETLKQNYRKYETLEGIM 180

Query: 181 TDGTARRLARRYNMRVADD 200
           +DGTA RL RRY++R+ DD
Sbjct: 181 SDGTAYRLGRRYDVRIHDD 199

[Close]

BLAST of Cp4.1LG17g10870 vs. TrEMBL
Match: A0A067E8V7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029074mg PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.1e-68
Identity = 129/199 (64.82%), Postives = 163/199 (81.91%), Query Frame = 1


Query: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60
           MGS T+ +YA F EKVKRTVY+DNLSPQVTEPV+RTALDQFG V +V FIPN+TE  N  
Sbjct: 1   MGSTTEAEYAAFLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIP 60

Query: 61  QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120
            CALVEM++ K+A  V++ + +FPFMMSGMPRPVRA  AEVEMFDD P KPG++I F WL
Sbjct: 61  HCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAAEVEMFDDHPAKPGQRIQFQWL 120

Query: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180
             +DPDFEVA+++K L ++H AEA+F+LK+QL +EE+LA QQ++ LK NYKKYE +EG+M
Sbjct: 121 DPNDPDFEVAQRLKRLARKHAAEASFVLKEQLEQEEQLANQQEETLKQNYKKYETLEGIM 180

Query: 181 TDGTARRLARRYNMRVADD 200
           +DGTA RL RRY++R+ DD
Sbjct: 181 SDGTAHRLGRRYDVRIHDD 199

[Close]

BLAST of Cp4.1LG17g10870 vs. TAIR10
Match: AT1G05970.2 (AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 188.0 bits (476), Expect = 5.8e-48
Identity = 92/195 (47.18%), Postives = 137/195 (70.26%), Query Frame = 1


Query: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60
           M +  +  Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPN+  P    
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 61  QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120
              LVEM++ +   +VIS ++Q PFM++GMPRPVRA  AE  MF D+P KPGR + F W+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180
             +DPDF+ A+++K L ++H AE +F+LK+QL E EKL+KQQ +    ++KK+E+++ ++
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLKKQLEEAEKLSKQQAETAVTHHKKFEMMDKLL 180

Query: 181 TDGTARRLARRYNMR 196
            DG A++LA RY+++
Sbjct: 181 YDGVAQKLAGRYDLK 195

[Close]

BLAST of Cp4.1LG17g10870 vs. NCBI nr
Match: gi|659081732|ref|XP_008441485.1| (PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo])

HSP 1 Score: 336.3 bits (861), Expect = 3.7e-89
Identity = 167/199 (83.92%), Postives = 183/199 (91.96%), Query Frame = 1


Query: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60
           MGSA DEQ++ FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSS
Sbjct: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120
           QCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAE EMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120

Query: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180
             DDPDFEVA+++K LT++HVAEAAFLLKQ L EEEKLAKQQQ+ L+ NYKKYEIV+ VM
Sbjct: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180

Query: 181 TDGTARRLARRYNMRVADD 200
            DGTARRLA+ YNMRV+DD
Sbjct: 181 ADGTARRLAKNYNMRVSDD 199

[Close]

BLAST of Cp4.1LG17g10870 vs. NCBI nr
Match: gi|449441282|ref|XP_004138411.1| (PREDICTED: uncharacterized protein LOC101221287 [Cucumis sativus])

HSP 1 Score: 331.6 bits (849), Expect = 9.2e-88
Identity = 165/199 (82.91%), Postives = 182/199 (91.46%), Query Frame = 1


Query: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60
           MGS  DEQ+A FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120
           QCALVEMKDSKEA SVI+VIAQFPFMMSGMPRPVRA PAEVEMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180
             DDPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LK NYKKYEIV+ VM
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180

Query: 181 TDGTARRLARRYNMRVADD 200
            DGTARRLA+ YNMR++DD
Sbjct: 181 ADGTARRLAKHYNMRISDD 199

[Close]

BLAST of Cp4.1LG17g10870 vs. NCBI nr
Match: gi|590655353|ref|XP_007033963.1| (RNA-binding family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 273.9 bits (699), Expect = 2.3e-70
Identity = 137/199 (68.84%), Postives = 161/199 (80.90%), Query Frame = 1


Query: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60
           MGSA   +YA FEEKV+RTVY+DNLSP VTE V+RTALDQ+GTV SVHFIPN+ EP N  
Sbjct: 1   MGSAEQGEYAAFEEKVRRTVYMDNLSPNVTESVVRTALDQYGTVKSVHFIPNYLEPQNIP 60

Query: 61  QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120
           QCALVEM+  K+   VIS I+QFPFMMSGMPRPVRA  A+VEMF DRP +PGR+I F WL
Sbjct: 61  QCALVEMETGKQVEVVISTISQFPFMMSGMPRPVRARAAKVEMFSDRPRQPGRRIHFRWL 120

Query: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180
              DPDFEVA K+K L +RH  E A +LK QL +EEKLAKQQ +ALKANYKKYE+++ +M
Sbjct: 121 DPADPDFEVANKLKHLAKRHATETAVMLKHQLEKEEKLAKQQGEALKANYKKYEMIDSLM 180

Query: 181 TDGTARRLARRYNMRVADD 200
            DGTARRLARRY++RV+DD
Sbjct: 181 ADGTARRLARRYDLRVSDD 199

[Close]

BLAST of Cp4.1LG17g10870 vs. NCBI nr
Match: gi|296082652|emb|CBI21657.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 270.0 bits (689), Expect = 3.3e-69
Identity = 130/199 (65.33%), Postives = 158/199 (79.40%), Query Frame = 1


Query: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60
           M S    +YA FE+KVKR VY+DN+SPQVT+ VL+TAL+QFGTVVS+HFIPN+ EP    
Sbjct: 61  MESPAQNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIP 120

Query: 61  QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120
           +CALVEM    EA ++IS +  +PFMMSGMPRP RA PAEVEMFDDRPIKPGR+I   WL
Sbjct: 121 RCALVEMAKQSEAEAIISDMNNYPFMMSGMPRPARARPAEVEMFDDRPIKPGRRIQCRWL 180

Query: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180
            K+DPDFEVAKK+K L ++H +EA+F+LK QL EEEKLAKQQ + LK NYKKYE+++ V+
Sbjct: 181 DKEDPDFEVAKKLKHLVRKHASEASFMLKNQLEEEEKLAKQQAEVLKTNYKKYEMIDSVL 240

Query: 181 TDGTARRLARRYNMRVADD 200
            DG ARRLAR YN  V+DD
Sbjct: 241 ADGAARRLARHYNFNVSDD 259

[Close]

BLAST of Cp4.1LG17g10870 vs. NCBI nr
Match: gi|225438281|ref|XP_002269083.1| (PREDICTED: uncharacterized protein LOC100255901 [Vitis vinifera])

HSP 1 Score: 270.0 bits (689), Expect = 3.3e-69
Identity = 130/199 (65.33%), Postives = 158/199 (79.40%), Query Frame = 1


Query: 1   MGSATDEQYAKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 60
           M S    +YA FE+KVKR VY+DN+SPQVT+ VL+TAL+QFGTVVS+HFIPN+ EP    
Sbjct: 1   MESPAQNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIP 60

Query: 61  QCALVEMKDSKEANSVISVIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 120
           +CALVEM    EA ++IS +  +PFMMSGMPRP RA PAEVEMFDDRPIKPGR+I   WL
Sbjct: 61  RCALVEMAKQSEAEAIISDMNNYPFMMSGMPRPARARPAEVEMFDDRPIKPGRRIQCRWL 120

Query: 121 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 180
            K+DPDFEVAKK+K L ++H +EA+F+LK QL EEEKLAKQQ + LK NYKKYE+++ V+
Sbjct: 121 DKEDPDFEVAKKLKHLVRKHASEASFMLKNQLEEEEKLAKQQAEVLKTNYKKYEMIDSVL 180

Query: 181 TDGTARRLARRYNMRVADD 200
            DG ARRLAR YN  V+DD
Sbjct: 181 ADGAARRLARHYNFNVSDD 199

The following BLAST results are available for this feature:

BLAST of Cp4.1LG17g10870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG17g10870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAE7_CUCSA	6.4e-88	82.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013320 PE=4 SV=1	[more]
A0A061EIN5_THECC	1.6e-70	68.84	RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_020046 PE=4 SV=1	[more]
D7SWK8_VITVI	2.3e-69	65.33	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03120 PE=4 SV=...	[more]
V4TX22_9ROSI	3.0e-69	65.33	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022331mg PE=4 SV=1	[more]
A0A067E8V7_CITSI	1.1e-68	64.82	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029074mg PE=4 SV=1	[more]

BLAST of Cp4.1LG17g10870 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05970.2	5.8e-48	47.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of Cp4.1LG17g10870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081732\|ref\|XP_008441485.1\|	3.7e-89	83.92	PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo]	[more]
gi\|449441282\|ref\|XP_004138411.1\|	9.2e-88	82.91	PREDICTED: uncharacterized protein LOC101221287 [Cucumis sativus]	[more]
gi\|590655353\|ref\|XP_007033963.1\|	2.3e-70	68.84	RNA-binding family protein isoform 1 [Theobroma cacao]	[more]
gi\|296082652\|emb\|CBI21657.3\|	3.3e-69	65.33	unnamed protein product [Vitis vinifera]	[more]
gi\|225438281\|ref\|XP_002269083.1\|	3.3e-69	65.33	PREDICTED: uncharacterized protein LOC100255901 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG17g10870.1	Cp4.1LG17g10870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 20..78 score: 4.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 19..97 score: 4.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 18..101 score: 11
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 13..89 score: 3.4
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 12..95 score: 6.58
None	No IPR available	unknown	Coil	Coil	coord: 149..169 scor
None	No IPR available	PANTHER	PTHR36309	FAMILY NOT NAMED	coord: 7..199 score: 2.7
None	No IPR available	PANTHER	PTHR36309:SF1	SUBFAMILY NOT NAMED	coord: 7..199 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG17g10870	CmaCh08G002020	Cucurbita maxima (Rimu)	cmacpeB914
Cp4.1LG17g10870	CmoCh08G002070	Cucurbita moschata (Rifu)	cmocpeB851
Cp4.1LG17g10870	ClCG08G004710	Watermelon (Charleston Gray)	cpewcgB312
Cp4.1LG17g10870	Lsi08G003730	Bottle gourd (USVL1VR-Ls)	cpelsiB279
Cp4.1LG17g10870	Carg05027	Silver-seed gourd	carcpeB0125

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG17g10870	Cucumber (Chinese Long) v3	cpecucB0413
Cp4.1LG17g10870	Wax gourd	cpewgoB0411
Cp4.1LG17g10870	Cucurbita pepo (Zucchini)	cpecpeB175
Cp4.1LG17g10870	Cucumber (Gy14) v1	cgycpeB0957
Cp4.1LG17g10870	Cucurbita maxima (Rimu)	cmacpeB394
Cp4.1LG17g10870	Cucurbita moschata (Rifu)	cmocpeB356
Cp4.1LG17g10870	Wild cucumber (PI 183967)	cpecpiB335
Cp4.1LG17g10870	Cucumber (Chinese Long) v2	cpecuB335
Cp4.1LG17g10870	Melon (DHL92) v3.5.1	cpemeB304
Cp4.1LG17g10870	Cucumber (Gy14) v2	cgybcpeB792
Cp4.1LG17g10870	Melon (DHL92) v3.6.1	cpemedB355