ClCG08G004710 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G004710
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionRNA-binding region RNP-1
LocationCG_Chr08 : 14846379 .. 14848321 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCAACGAAGGATGATCAATTTCCCATGTTTGAGGAGAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCTCCCCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATCCCAAACTACACAGAGCCAATTAATAGCTCTCAATGTGCTCTAGTAGAGATGAAGGATTTGAAGGAGGCGAAATCTGTTATCTCCGTGATATCTCAGTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTTGATGATCGCCCTGTAAAGCCTGGTAGGAAGATTAGCTTTAGCTGGCTGGAAAAGGATGATCCTGATTTTGAAGTGGCCAAGAAAATTAAGCTTCTTACTCAGAAACATGTGGCTGAAGTTACATTCTTGCTGAAGGCATGAGTTTCAAAATCCCATCTCTCAACACCCCCCAAACCAAAAATAAAATAGAAATAAAAATAAAAATAAAAATAAAAATAAAAATCTATTATGGTTGTTCTTATTTAGTGCTTGAATTTTAAAAAGTTTGAATTATATATCTGAACTTTGAATTGTGATTCTTAGACGATGTGAGATATTTAGTAGACGAACGTTAGTTAATTTAGCACAATGTGGCATAGGTGACAAAAGAAAGAGGCTAGTTAGCAACATGCCTTGTAGATTGTTATCACTCTGTTTTGTTTAGCTATCCTCTCTCTCGTCTTCCATTTTTGTGCCACATTGTGCTAAATCAATCCATTAGCATTTGTTTATCTGATAAGAGTATTGGAATCATAATTGAAAGTTTGTGTATGTAATTAGAACCTTTTAAAATTAAATAAACACAACCATTAACGTTTGGACTATATTTTGAATGTGGTCAAATTATAAGTTGGGTCCCACAACTTTGAGATTTTCTCGTGATTGTTTAGTTCATTTACTTTTAAATCTCTCTAGTAGGTCTCCTCAACTTTCCAGTTGTGTCTGTTTAACCCTTATACTTTAAAAGAATATAATAGCTTTCTAGCTTTTAGGTTGGGTCTATTTAACCCTCATTTTTATAAAAAAGGGTAATTGTAAAGGGAATATTTTTAGGGTTGATAATCAAGTGTATAGCAACATTTTTAAAGAATTGCAAATATAACAAAATCTATTGATGATAGGCTCTATCGTTGATGTACCTATTAGTGGTAGACTTTGATAGCTGAATTTAAATTTTGATATATGTGCAAATTCTTTGTGCTATATCTGTTAATACTTTGAGCTTGGTTGCTATTTTTGCAACTGTCCTTTTAATATACTTGAAATCAACCCATTTGTGTATCGCTCAAGTAAGTGTTAAGGTGGTGGAGTTAACTATGAGATCTATTAGGCACAAAGTTAAAAAGTTAGACACATTTTGAAGTACAAAGATTAAGTAGATACGATCTTGAAAGATTAAGTAGATACGATCTTGATCTTGAAAGCCTTGAATCTATTAGAAATCCTTTGAAATATAGGAATAAGTAAACACAACTCTAAAAGTTTAGGGATCATATTGGTAATTTGGGCTAACATAGATTCCTCCAATTCCTCTGCAGCACCATTTGGCGGAAGAGGAGAAGCTTGCAAAGCAGCAACAAGAAGCACTGAAAGGAAACTACAAGAAATATGAGATTGTAGAAAGTGTAATGGCTGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAGTTTCAGATGATTAATTGAAAGCTTTGAAGCTTTGCTTTTGTAACTCCTAATGCCCCCTGATTTTTACATGTAAATATGTACAAATGGTCATTGATATGCCCAATATTGATGAATAAGAGACTTCTTTTGTGATTTAGAGGGAGAAGGATAGATAATTAGTATAATACTCCTAACAACACTCTTTTGGATTTCAG

mRNA sequence

ATGGGATCAACGAAGGATGATCAATTTCCCATGTTTGAGGAGAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCTCCCCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATCCCAAACTACACAGAGCCAATTAATAGCTCTCAATGTGCTCTAGTAGAGATGAAGGATTTGAAGGAGGCGAAATCTGTTATCTCCGTGATATCTCAGTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTTGATGATCGCCCTGTAAAGCCTGGTAGGAAGATTAGCTTTAGCTGGCTGGAAAAGGATGATCCTGATTTTGAAGTGGCCAAGAAAATTAAGCTTCTTACTCAGAAACATGTGGCTGAACACCATTTGGCGGAAGAGGAGAAGCTTGCAAAGCAGCAACAAGAAGCACTGAAAGGAAACTACAAGAAATATGAGATTGTAGAAAGTGTAATGGCTGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAGTTTCAGATGATTAATTGAAAGCTTTGAAGCTTTGCTTTTGTAACTCCTAATGCCCCCTGATTTTTACATGTAAATATGTACAAATGGTCATTGATATGCCCAATATTGATGAATAAGAGACTTCTTTTGTGATTTAGAGGGAGAAGGATAGATAATTAGTATAATACTCCTAACAACACTCTTTTGGATTTCAG

Coding sequence (CDS)

ATGGGATCAACGAAGGATGATCAATTTCCCATGTTTGAGGAGAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCTCCCCAAGTAACTGAGCCTGTTTTGAGAACTGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATCCCAAACTACACAGAGCCAATTAATAGCTCTCAATGTGCTCTAGTAGAGATGAAGGATTTGAAGGAGGCGAAATCTGTTATCTCCGTGATATCTCAGTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCGCGCCCTGCCGAAGTGGAAATGTTTGATGATCGCCCTGTAAAGCCTGGTAGGAAGATTAGCTTTAGCTGGCTGGAAAAGGATGATCCTGATTTTGAAGTGGCCAAGAAAATTAAGCTTCTTACTCAGAAACATGTGGCTGAACACCATTTGGCGGAAGAGGAGAAGCTTGCAAAGCAGCAACAAGAAGCACTGAAAGGAAACTACAAGAAATATGAGATTGTAGAAAGTGTAATGGCTGATGGAACTGCCCGCAGGTTAGCAAAACATTATAATATGCGAGTTTCAGATGATTAA

Protein sequence

MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSSQCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFSWLEKDDPDFEVAKKIKLLTQKHVAEHHLAEEEKLAKQQQEALKGNYKKYEIVESVMADGTARRLAKHYNMRVSDD
Homology
[Close]
BLAST of ClCG08G004710 vs. TrEMBL
Match: A0A0A0KAE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013320 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 2.4e-92
Identity = 174/199 (87.44%), Postives = 184/199 (92.46%), Query Frame = 1 

Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KD+QF MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFSWL 120
           QCALVEMKD KEAKSVI+VI+QFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISF WL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAE------HHLAEEEKLAKQQQEALKGNYKKYEIVESVM 180
           E DDPDFEVA++IK L++KHVAE       H+AEEEKLAKQQQE LKGNYKKYEIV+SVM
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180

Query: 181 ADGTARRLAKHYNMRVSDD 194
           ADGTARRLAKHYNMR+SDD
Sbjct: 181 ADGTARRLAKHYNMRISDD 199

[Close]
BLAST of ClCG08G004710 vs. TrEMBL
Match: D7SWK8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03120 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.2e-69
Identity = 129/199 (64.82%), Postives = 160/199 (80.40%), Query Frame = 1 

Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M S   +++ +FE+KVKR VY+DN+SPQVT+ VL+TAL+QFGTVVS+HFIPNY EP    
Sbjct: 61  MESPAQNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIP 120

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFSWL 120
           +CALVEM    EA+++IS ++ +PFMMSGMPRP RARPAEVEMFDDRP+KPGR+I   WL
Sbjct: 121 RCALVEMAKQSEAEAIISDMNNYPFMMSGMPRPARARPAEVEMFDDRPIKPGRRIQCRWL 180

Query: 121 EKDDPDFEVAKKIKLLTQKHVAE------HHLAEEEKLAKQQQEALKGNYKKYEIVESVM 180
           +K+DPDFEVAKK+K L +KH +E      + L EEEKLAKQQ E LK NYKKYE+++SV+
Sbjct: 181 DKEDPDFEVAKKLKHLVRKHASEASFMLKNQLEEEEKLAKQQAEVLKTNYKKYEMIDSVL 240

Query: 181 ADGTARRLAKHYNMRVSDD 194
           ADG ARRLA+HYN  VSDD
Sbjct: 241 ADGAARRLARHYNFNVSDD 259

[Close]
BLAST of ClCG08G004710 vs. TrEMBL
Match: A0A061EIN5_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_020046 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 3.8e-69
Identity = 134/199 (67.34%), Postives = 159/199 (79.90%), Query Frame = 1 

Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS +  ++  FEEKV+RTVY+DNLSP VTE V+RTALDQ+GTV SVHFIPNY EP N  
Sbjct: 1   MGSAEQGEYAAFEEKVRRTVYMDNLSPNVTESVVRTALDQYGTVKSVHFIPNYLEPQNIP 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFSWL 120
           QCALVEM+  K+ + VIS ISQFPFMMSGMPRPVRAR A+VEMF DRP +PGR+I F WL
Sbjct: 61  QCALVEMETGKQVEVVISTISQFPFMMSGMPRPVRARAAKVEMFSDRPRQPGRRIHFRWL 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAE------HHLAEEEKLAKQQQEALKGNYKKYEIVESVM 180
           +  DPDFEVA K+K L ++H  E      H L +EEKLAKQQ EALK NYKKYE+++S+M
Sbjct: 121 DPADPDFEVANKLKHLAKRHATETAVMLKHQLEKEEKLAKQQGEALKANYKKYEMIDSLM 180

Query: 181 ADGTARRLAKHYNMRVSDD 194
           ADGTARRLA+ Y++RVSDD
Sbjct: 181 ADGTARRLARRYDLRVSDD 199

[Close]
BLAST of ClCG08G004710 vs. TrEMBL
Match: A0A067L601_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20842 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.3e-66
Identity = 128/199 (64.32%), Postives = 154/199 (77.39%), Query Frame = 1 

Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS   +++  FEEKVKRTVY+DNLSPQVTE VL++AL+QFG V+ V F+PNY EP N S
Sbjct: 1   MGSKAQEEYAAFEEKVKRTVYIDNLSPQVTEAVLKSALNQFGIVLRVTFVPNYLEPQNIS 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFSWL 120
           +CALVEMK+ K AK+V+S I+QFPFM+SGMPRPVRARPAE+EMFDDRP +PGRKI   WL
Sbjct: 61  RCALVEMKEAKHAKAVVSEIAQFPFMVSGMPRPVRARPAEIEMFDDRPRRPGRKIHCRWL 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAE------HHLAEEEKLAKQQQEALKGNYKKYEIVESVM 180
           E  DPDFEVA+K+K LT+KH AE        L  EEKL KQQ E LK NY KYE+V+ + 
Sbjct: 121 EPGDPDFEVARKLKRLTRKHAAEASFLLQQQLKREEKLHKQQLETLKANYNKYEMVDGIF 180

Query: 181 ADGTARRLAKHYNMRVSDD 194
           AD + +RLA HY MR+S D
Sbjct: 181 ADNSVQRLADHYRMRISYD 199

[Close]
BLAST of ClCG08G004710 vs. TrEMBL
Match: A0A0D2UT21_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G142700 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.3e-66
Identity = 131/199 (65.83%), Postives = 154/199 (77.39%), Query Frame = 1 

Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M S K +++  FEEKV+RTVY+DNLSP VTE V+RTALDQ+GTV SV FIPNY EP N  
Sbjct: 1   MESGKQNEYAAFEEKVRRTVYLDNLSPNVTESVVRTALDQYGTVKSVEFIPNYLEPRNMP 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFSWL 120
           QCALVEM+  K+AK VIS +S+FPFMMSGMPRPVRAR A  EMF DRP KPGR+I   WL
Sbjct: 61  QCALVEMEKEKQAKVVISTLSEFPFMMSGMPRPVRARAAVAEMFGDRPRKPGRQIRIRWL 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAE------HHLAEEEKLAKQQQEALKGNYKKYEIVESVM 180
           +  DPDFEVA K+K L ++H  E      H L +EEKLAKQQ E LK NYKKYE+++S+M
Sbjct: 121 DTADPDFEVASKLKQLVKRHATETAVMLKHQLEKEEKLAKQQGETLKANYKKYEMIDSLM 180

Query: 181 ADGTARRLAKHYNMRVSDD 194
           ADG ARRLA+ YN+RVSDD
Sbjct: 181 ADGAARRLARCYNLRVSDD 199

[Close]
BLAST of ClCG08G004710 vs. TAIR10
Match: AT1G05970.2 (AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 179.9 bits (455), Expect = 1.5e-45
Identity = 89/195 (45.64%), Postives = 130/195 (66.67%), Query Frame = 1 

Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M + ++  +  F E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPNY  P    
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFSWL 120
              LVEM++ +  ++VIS +SQ PFM++GMPRPVRA  AE  MF D+P KPGR + F W+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAEH------HLAEEEKLAKQQQEALKGNYKKYEIVESVM 180
           + +DPDF+ A+++K L +KH AE+       L E EKL+KQQ E    ++KK+E+++ ++
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLKKQLEEAEKLSKQQAETAVTHHKKFEMMDKLL 180

Query: 181 ADGTARRLAKHYNMR 190
            DG A++LA  Y+++
Sbjct: 181 YDGVAQKLAGRYDLK 195

[Close]
BLAST of ClCG08G004710 vs. NCBI nr
Match: gi|659081732|ref|XP_008441485.1| (PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo])

HSP 1 Score: 346.7 bits (888), Expect = 2.7e-92
Identity = 174/199 (87.44%), Postives = 184/199 (92.46%), Query Frame = 1 

Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KD+QF MFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPNYTEPINSS
Sbjct: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFSWL 120
           QCALVEMKD KEAKSVI+VI+QFPFMMSGMPRPVRARPAE EMFDDRPVKPGRKISF WL
Sbjct: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAE------HHLAEEEKLAKQQQEALKGNYKKYEIVESVM 180
           E DDPDFEVA++IK LT+KHVAE       HLAEEEKLAKQQQE L+GNYKKYEIV+SVM
Sbjct: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180

Query: 181 ADGTARRLAKHYNMRVSDD 194
           ADGTARRLAK+YNMRVSDD
Sbjct: 181 ADGTARRLAKNYNMRVSDD 199

[Close]
BLAST of ClCG08G004710 vs. NCBI nr
Match: gi|449441282|ref|XP_004138411.1| (PREDICTED: uncharacterized protein LOC101221287 [Cucumis sativus])

HSP 1 Score: 346.3 bits (887), Expect = 3.5e-92
Identity = 174/199 (87.44%), Postives = 184/199 (92.46%), Query Frame = 1 

Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS KD+QF MFEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFSWL 120
           QCALVEMKD KEAKSVI+VI+QFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISF WL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAE------HHLAEEEKLAKQQQEALKGNYKKYEIVESVM 180
           E DDPDFEVA++IK L++KHVAE       H+AEEEKLAKQQQE LKGNYKKYEIV+SVM
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180

Query: 181 ADGTARRLAKHYNMRVSDD 194
           ADGTARRLAKHYNMR+SDD
Sbjct: 181 ADGTARRLAKHYNMRISDD 199

[Close]
BLAST of ClCG08G004710 vs. NCBI nr
Match: gi|296082652|emb|CBI21657.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 270.0 bits (689), Expect = 3.2e-69
Identity = 129/199 (64.82%), Postives = 160/199 (80.40%), Query Frame = 1 

Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M S   +++ +FE+KVKR VY+DN+SPQVT+ VL+TAL+QFGTVVS+HFIPNY EP    
Sbjct: 61  MESPAQNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIP 120

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFSWL 120
           +CALVEM    EA+++IS ++ +PFMMSGMPRP RARPAEVEMFDDRP+KPGR+I   WL
Sbjct: 121 RCALVEMAKQSEAEAIISDMNNYPFMMSGMPRPARARPAEVEMFDDRPIKPGRRIQCRWL 180

Query: 121 EKDDPDFEVAKKIKLLTQKHVAE------HHLAEEEKLAKQQQEALKGNYKKYEIVESVM 180
           +K+DPDFEVAKK+K L +KH +E      + L EEEKLAKQQ E LK NYKKYE+++SV+
Sbjct: 181 DKEDPDFEVAKKLKHLVRKHASEASFMLKNQLEEEEKLAKQQAEVLKTNYKKYEMIDSVL 240

Query: 181 ADGTARRLAKHYNMRVSDD 194
           ADG ARRLA+HYN  VSDD
Sbjct: 241 ADGAARRLARHYNFNVSDD 259

[Close]
BLAST of ClCG08G004710 vs. NCBI nr
Match: gi|225438281|ref|XP_002269083.1| (PREDICTED: uncharacterized protein LOC100255901 [Vitis vinifera])

HSP 1 Score: 270.0 bits (689), Expect = 3.2e-69
Identity = 129/199 (64.82%), Postives = 160/199 (80.40%), Query Frame = 1 

Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           M S   +++ +FE+KVKR VY+DN+SPQVT+ VL+TAL+QFGTVVS+HFIPNY EP    
Sbjct: 1   MESPAQNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKIP 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFSWL 120
           +CALVEM    EA+++IS ++ +PFMMSGMPRP RARPAEVEMFDDRP+KPGR+I   WL
Sbjct: 61  RCALVEMAKQSEAEAIISDMNNYPFMMSGMPRPARARPAEVEMFDDRPIKPGRRIQCRWL 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAE------HHLAEEEKLAKQQQEALKGNYKKYEIVESVM 180
           +K+DPDFEVAKK+K L +KH +E      + L EEEKLAKQQ E LK NYKKYE+++SV+
Sbjct: 121 DKEDPDFEVAKKLKHLVRKHASEASFMLKNQLEEEEKLAKQQAEVLKTNYKKYEMIDSVL 180

Query: 181 ADGTARRLAKHYNMRVSDD 194
           ADG ARRLA+HYN  VSDD
Sbjct: 181 ADGAARRLARHYNFNVSDD 199

[Close]
BLAST of ClCG08G004710 vs. NCBI nr
Match: gi|590655353|ref|XP_007033963.1| (RNA-binding family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 269.2 bits (687), Expect = 5.4e-69
Identity = 134/199 (67.34%), Postives = 159/199 (79.90%), Query Frame = 1 

Query: 1   MGSTKDDQFPMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60
           MGS +  ++  FEEKV+RTVY+DNLSP VTE V+RTALDQ+GTV SVHFIPNY EP N  
Sbjct: 1   MGSAEQGEYAAFEEKVRRTVYMDNLSPNVTESVVRTALDQYGTVKSVHFIPNYLEPQNIP 60

Query: 61  QCALVEMKDLKEAKSVISVISQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFSWL 120
           QCALVEM+  K+ + VIS ISQFPFMMSGMPRPVRAR A+VEMF DRP +PGR+I F WL
Sbjct: 61  QCALVEMETGKQVEVVISTISQFPFMMSGMPRPVRARAAKVEMFSDRPRQPGRRIHFRWL 120

Query: 121 EKDDPDFEVAKKIKLLTQKHVAE------HHLAEEEKLAKQQQEALKGNYKKYEIVESVM 180
           +  DPDFEVA K+K L ++H  E      H L +EEKLAKQQ EALK NYKKYE+++S+M
Sbjct: 121 DPADPDFEVANKLKHLAKRHATETAVMLKHQLEKEEKLAKQQGEALKANYKKYEMIDSLM 180

Query: 181 ADGTARRLAKHYNMRVSDD 194
           ADGTARRLA+ Y++RVSDD
Sbjct: 181 ADGTARRLARRYDLRVSDD 199

The following BLAST results are available for this feature:
BLAST of ClCG08G004710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAE7_CUCSA2.4e-9287.44Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013320 PE=4 SV=1[more]
D7SWK8_VITVI2.2e-6964.82Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03120 PE=4 SV=... [more]
A0A061EIN5_THECC3.8e-6967.34RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_020046 PE=4 SV=1[more]
A0A067L601_JATCU2.3e-6664.32Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20842 PE=4 SV=1[more]
A0A0D2UT21_GOSRA2.3e-6665.83Uncharacterized protein OS=Gossypium raimondii GN=B456_011G142700 PE=4 SV=1[more]
BLAST of ClCG08G004710 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G05970.21.5e-4545.64 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of ClCG08G004710 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659081732|ref|XP_008441485.1|2.7e-9287.44PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo][more]
gi|449441282|ref|XP_004138411.1|3.5e-9287.44PREDICTED: uncharacterized protein LOC101221287 [Cucumis sativus][more]
gi|296082652|emb|CBI21657.3|3.2e-6964.82unnamed protein product [Vitis vinifera][more]
gi|225438281|ref|XP_002269083.1|3.2e-6964.82PREDICTED: uncharacterized protein LOC100255901 [Vitis vinifera][more]
gi|590655353|ref|XP_007033963.1|5.4e-6967.34RNA-binding family protein isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G004710.1ClCG08G004710.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 20..78
score: 9.
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 19..97
score: 1.
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 18..101
score: 11
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 13..93
score: 3.6
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 9..95
score: 7.39
NoneNo IPR availablePANTHERPTHR36309FAMILY NOT NAMEDcoord: 8..193
score: 6.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG08G004710Cla002861Watermelon (97103) v1wcgwmB405
ClCG08G004710Cla97C08G147710Watermelon (97103) v2wcgwmbB336
ClCG08G004710CmaCh08G002020Cucurbita maxima (Rimu)cmawcgB816
ClCG08G004710CmoCh08G002070Cucurbita moschata (Rifu)cmowcgB812
ClCG08G004710Lsi08G003730Bottle gourd (USVL1VR-Ls)lsiwcgB439
ClCG08G004710Cp4.1LG17g10870Cucurbita pepo (Zucchini)cpewcgB312
ClCG08G004710Carg05027Silver-seed gourdcarwcgB0088
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G004710Wax gourdwcgwgoB632
ClCG08G004710Cucumber (Gy14) v1cgywcgB626
ClCG08G004710Wild cucumber (PI 183967)cpiwcgB528
ClCG08G004710Cucumber (Chinese Long) v2cuwcgB502
ClCG08G004710Melon (DHL92) v3.5.1mewcgB304
ClCG08G004710Cucumber (Gy14) v2cgybwcgB460
ClCG08G004710Melon (DHL92) v3.6.1medwcgB299
ClCG08G004710Cucumber (Chinese Long) v3cucwcgB520