CmoCh08G002070 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G002070
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	RNA-binding region RNP-1 protein
Location	Cmo_Chr08 : 1219376 .. 1221596 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGTAACCTTGGAGCATGGGGCCATTTCTTCATGCCAAAAGTTTGCTTCTGATGAAGTTTCTCCAACTATTAAATGTAGGTCCGGTAGGTTTGTTGCCGCCTTGGGATTGATCAGTATCTAGCGTAGAGTTTACGGACATAAATTGCTAAGTTACAAATAGTTAACCTATTCACATAAGACATGATTTCAACCTAAAATGTATCAGCCCAAGTCCACCACTAGCAAATATTGTCCTCTTTGAGATTTCCTTCCTGGACTCCCCTCAAAGTTTTAAAATGTGTCCTTGTGTTCATTGCTTGGGCTTAAAAAACCTTGAGGAGAAGCCAGCTTGGGCTATTACAAATGGTATCAAAGCTAGACACCGAGTTGTGTGCCAGCAAGAACGTAGGACCCCGAATAGGGTGGATCGTGAGATCCCACATCGATTAGAGAGAGGAACGAGTGCCAGCAAGGATGCTGAGCCCGAAGGGGGTGGATTGTGAGATCCCAAATCGGTTGGAGAGGGAACAAAGCATTCTTTACAAGGGTGTGGAAACTTCTCCCTAGTAGACGTGTTTTAAAACTGTGAGGCTGATGGCGATACGTAACGGGCTAAACCGGACAATATCTGTTAACGGTGGGCTTGGACTGTTATATAAAAGTTGTTGTATCAGTAACCTAAGCACATCTAATTGGTTAAGAGATCTATTAATTTCCTTGAGGTGAATCAAATTCCAATCATACAGTGTGTACTCTTTCGTGTTGTTTTTTTGACACTGTAATTATCTTAGTTTACATTAAACAATTGTGCTAACTCCTTTAATGGGTATATTAGGTTCTTTATCATCCCACATGGGATCAGCTACGGATGAACAATATGTTAAGTTTGAGGAAAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTCTTGAGAACCGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATTCCAAATTTCACGGAGCCAATTAATAGCTCTCAATGTGCTTTAGTCGAGATGAAGGACTCGAAGGAGGCAAATTCTGTCATCTCTCTGATAGCTCAGTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCGTACCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTATAAAGCCCGGTAGGAAGATTAGCTTTGTCTGGTTGGGAAAGGATGATCCTGACTTTGAAGTGGCAAAGAAAATGAAGTGTCTTACTCAGAGGCATGTCGCTGAAGCTGCATTCTTGCTGAAGGTATGCCACATTTAGTCTGTATTTTGTAGGTCTCTAATATTGTTCCCACCAGTTTAACGTTTATACCATGAAATCAACCCTTCGGTGTGCCGCTCAGGTGTTAAACTGGTGGAGTCAACGAGACATATAAGACACAAAACTAAAAATTTAGAGGCAACTTTTAAATTATAAAGATGAAACATACTCGATGTTGAAAGTTCAAGGATCTATTAGAAAACTTTTAAAGTAGGACTAAAAGTCGAGGGATCGAACTTGAAATTTAGCCTTGTTAAATAGTTCTTAACAAAGGTTCCTCCCATTCTCTTGCAGCAACAGTTGGTGGAAGAGGAGAAGCTTGCAAAGCAGCAGCAAGATGCACTGAAAGCAAACTACAAGAAATATGAGATCGTTGAAGGTGTAATGACTGATGGAACTGCCCGCAGGTTAGCAAGGCGTTATAATATGCGAGTTGCAGATGATTAATTGCATGCTTTGAAGCTTTTTTTGCACTCCTAATTGCCTGATCACGTAAATTTTGTACAAATTATCACTTAGATGGCCTTATAGAGATTAATTAGAGAATTCTGTTGTGATTTAGAGGGAGAAGGATAGTTAATTAGTGTAATACTCCTATTATTACTCTTGGATTCGTCTCTTGTTTGGGAAATGACTTCGGTTTAAAATCATCTAAAGACATTCGTTCCTATAAGAGCTTGAGAACGGACAAAGGCATAGGTTGAACACCTCAAAGAAACAACTCTAAACTTTTAAGGACCCTGTCCCATCGAAAACAAATATTGTCTTCTTTCGGCTTTCCTTTCTAGGTTTCCCTTTAAGATTTTTAAGACACGTCTACACTCTTATAAAGAATATTTCATTATCCTTCCAACCATTGTGTGATCTCACAAAACATACTCTTGCAACATCACATCTCCAAAGAAAATGATCGAAGTCTCTTG

mRNA sequence

ATGGTTGTAACCTTGGAGCATGGGGCCATTTCTTCATGCCAAAAGTTTGCTTCTGATGAAGTTTCTCCAACTATTAAATGTTCTTTATCATCCCACATGGGATCAGCTACGGATGAACAATATGTTAAGTTTGAGGAAAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTCTTGAGAACCGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATTCCAAATTTCACGGAGCCAATTAATAGCTCTCAATGTGCTTTAGTCGAGATGAAGGACTCGAAGGAGGCAAATTCTGTCATCTCTCTGATAGCTCAGTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCGTACCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTATAAAGCCCGGTAGGAAGATTAGCTTTGTCTGGTTGGGAAAGGATGATCCTGACTTTGAAGTGGCAAAGAAAATGAAGTGTCTTACTCAGAGGCATGTCGCTGAAGCTGCATTCTTGCTGAAGCAACAGTTGGTGGAAGAGGAGAAGCTTGCAAAGCAGCAGCAAGATGCACTGAAAGCAAACTACAAGAAATATGAGATCGTTGAAGGTGTAATGACTGATGGAACTGCCCGCAGGTTAGCAAGGCGTTATAATATGCGAGTTGCAGATGATTAATTGCATGCTTTGAAGCTTTTTTTGCACTCCTAATTGCCTGATCACGTAAATTTTGTACAAATTATCACTTAGATGGCCTTATAGAGATTAATTAGAGAATTCTGTTGTGATTTAGAGGGAGAAGGATAGTTAATTAGTGTAATACTCCTATTATTACTCTTGGATTCGTCTCTTGTTTGGGAAATGACTTCGGTTTAAAATCATCTAAAGACATTCGTTCCTATAAGAGCTTGAGAACGGACAAAGGCATAGGTTGAACACCTCAAAGAAACAACTCTAAACTTTTAAGGACCCTGTCCCATCGAAAACAAATATTGTCTTCTTTCGGCTTTCCTTTCTAGGTTTCCCTTTAAGATTTTTAAGACACGTCTACACTCTTATAAAGAATATTTCATTATCCTTCCAACCATTGTGTGATCTCACAAAACATACTCTTGCAACATCACATCTCCAAAGAAAATGATCGAAGTCTCTTG

Coding sequence (CDS)

ATGGTTGTAACCTTGGAGCATGGGGCCATTTCTTCATGCCAAAAGTTTGCTTCTGATGAAGTTTCTCCAACTATTAAATGTTCTTTATCATCCCACATGGGATCAGCTACGGATGAACAATATGTTAAGTTTGAGGAAAAGGTAAAACGGACTGTCTATGTTGATAATCTCTCCCCCCAAGTGACTGAGCCTGTCTTGAGAACCGCTTTAGATCAGTTTGGGACTGTTGTCAGTGTCCATTTTATTCCAAATTTCACGGAGCCAATTAATAGCTCTCAATGTGCTTTAGTCGAGATGAAGGACTCGAAGGAGGCAAATTCTGTCATCTCTCTGATAGCTCAGTTCCCTTTCATGATGTCTGGAATGCCGAGACCGGTGAGGGCGTACCCTGCCGAAGTGGAAATGTTCGATGATCGCCCTATAAAGCCCGGTAGGAAGATTAGCTTTGTCTGGTTGGGAAAGGATGATCCTGACTTTGAAGTGGCAAAGAAAATGAAGTGTCTTACTCAGAGGCATGTCGCTGAAGCTGCATTCTTGCTGAAGCAACAGTTGGTGGAAGAGGAGAAGCTTGCAAAGCAGCAGCAAGATGCACTGAAAGCAAACTACAAGAAATATGAGATCGTTGAAGGTGTAATGACTGATGGAACTGCCCGCAGGTTAGCAAGGCGTTATAATATGCGAGTTGCAGATGATTAA

Homology

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BLAST of CmoCh08G002070 vs. TrEMBL
Match: A0A0A0KAE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013320 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 6.3e-87
Identity = 163/199 (81.91%), Postives = 181/199 (90.95%), Query Frame = 1


Query: 33  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 92
           MGS  DEQ+  FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 93  QCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 152
           QCALVEMKDSKEA SVI++IAQFPFMMSGMPRPVRA PAEVEMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 153 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 212
             DDPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LK NYKKYEIV+ VM
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180

Query: 213 TDGTARRLARRYNMRVADD 232
            DGTARRLA+ YNMR++DD
Sbjct: 181 ADGTARRLAKHYNMRISDD 199

[Close]

BLAST of CmoCh08G002070 vs. TrEMBL
Match: A0A061EIN5_THECC (RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_020046 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 9.1e-70
Identity = 136/199 (68.34%), Postives = 160/199 (80.40%), Query Frame = 1


Query: 33  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 92
           MGSA   +Y  FEEKV+RTVY+DNLSP VTE V+RTALDQ+GTV SVHFIPN+ EP N  
Sbjct: 1   MGSAEQGEYAAFEEKVRRTVYMDNLSPNVTESVVRTALDQYGTVKSVHFIPNYLEPQNIP 60

Query: 93  QCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 152
           QCALVEM+  K+   VIS I+QFPFMMSGMPRPVRA  A+VEMF DRP +PGR+I F WL
Sbjct: 61  QCALVEMETGKQVEVVISTISQFPFMMSGMPRPVRARAAKVEMFSDRPRQPGRRIHFRWL 120

Query: 153 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 212
              DPDFEVA K+K L +RH  E A +LK QL +EEKLAKQQ +ALKANYKKYE+++ +M
Sbjct: 121 DPADPDFEVANKLKHLAKRHATETAVMLKHQLEKEEKLAKQQGEALKANYKKYEMIDSLM 180

Query: 213 TDGTARRLARRYNMRVADD 232
            DGTARRLARRY++RV+DD
Sbjct: 181 ADGTARRLARRYDLRVSDD 199

[Close]

BLAST of CmoCh08G002070 vs. TrEMBL
Match: D7SWK8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03120 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.2e-69
Identity = 130/200 (65.00%), Postives = 158/200 (79.00%), Query Frame = 1


Query: 32  HMGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINS 91
           HM S    +Y  FE+KVKR VY+DN+SPQVT+ VL+TAL+QFGTVVS+HFIPN+ EP   
Sbjct: 60  HMESPAQNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKI 119

Query: 92  SQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVW 151
            +CALVEM    EA ++IS +  +PFMMSGMPRP RA PAEVEMFDDRPIKPGR+I   W
Sbjct: 120 PRCALVEMAKQSEAEAIISDMNNYPFMMSGMPRPARARPAEVEMFDDRPIKPGRRIQCRW 179

Query: 152 LGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGV 211
           L K+DPDFEVAKK+K L ++H +EA+F+LK QL EEEKLAKQQ + LK NYKKYE+++ V
Sbjct: 180 LDKEDPDFEVAKKLKHLVRKHASEASFMLKNQLEEEEKLAKQQAEVLKTNYKKYEMIDSV 239

Query: 212 MTDGTARRLARRYNMRVADD 232
           + DG ARRLAR YN  V+DD
Sbjct: 240 LADGAARRLARHYNFNVSDD 259

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BLAST of CmoCh08G002070 vs. TrEMBL
Match: V4TX22_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022331mg PE=4 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.3e-68
Identity = 129/199 (64.82%), Postives = 164/199 (82.41%), Query Frame = 1


Query: 33  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 92
           MGS T+ +Y  F EKVKRTVY+DNLSPQVTEPV+RTALDQFG V +V FIPN+TE  N  
Sbjct: 1   MGSTTEAEYAAFLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIP 60

Query: 93  QCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 152
            CALVEM++SK+A  V++ + +FPFMMSGMPRPVRA  AEVEMFDDRP KPG++I F WL
Sbjct: 61  HCALVEMENSKQAKDVVTSLHEFPFMMSGMPRPVRARAAEVEMFDDRPAKPGQRIQFRWL 120

Query: 153 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 212
             +DPDFEVA+++K L ++H AEA+F+LK+QL +EE+LA QQ++ LK NY+KYE +EG+M
Sbjct: 121 DPNDPDFEVAQRLKRLARKHAAEASFVLKEQLEQEEQLANQQEETLKQNYRKYETLEGIM 180

Query: 213 TDGTARRLARRYNMRVADD 232
           +DGTA RL RRY++R+ DD
Sbjct: 181 SDGTAYRLGRRYDVRIHDD 199

[Close]

BLAST of CmoCh08G002070 vs. TrEMBL
Match: A0A067E8V7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029074mg PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 5.0e-68
Identity = 128/199 (64.32%), Postives = 162/199 (81.41%), Query Frame = 1


Query: 33  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 92
           MGS T+ +Y  F EKVKRTVY+DNLSPQVTEPV+RTALDQFG V +V FIPN+TE  N  
Sbjct: 1   MGSTTEAEYAAFLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIP 60

Query: 93  QCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 152
            CALVEM++ K+A  V++ + +FPFMMSGMPRPVRA  AEVEMFDD P KPG++I F WL
Sbjct: 61  HCALVEMENLKQAKDVVTSLHEFPFMMSGMPRPVRARAAEVEMFDDHPAKPGQRIQFQWL 120

Query: 153 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 212
             +DPDFEVA+++K L ++H AEA+F+LK+QL +EE+LA QQ++ LK NYKKYE +EG+M
Sbjct: 121 DPNDPDFEVAQRLKRLARKHAAEASFVLKEQLEQEEQLANQQEETLKQNYKKYETLEGIM 180

Query: 213 TDGTARRLARRYNMRVADD 232
           +DGTA RL RRY++R+ DD
Sbjct: 181 SDGTAHRLGRRYDVRIHDD 199

[Close]

BLAST of CmoCh08G002070 vs. TAIR10
Match: AT1G05970.2 (AT1G05970.2 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 187.2 bits (474), Expect = 1.1e-47
Identity = 92/195 (47.18%), Postives = 137/195 (70.26%), Query Frame = 1


Query: 33  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 92
           M +  +  Y KF E+V+RTVYVD L+P  T PV+ +A +QFGTV  V FIPN+  P    
Sbjct: 1   MATPEEVAYEKFLERVRRTVYVDELTPLATAPVISSAFNQFGTVKKVSFIPNYLGPKELP 60

Query: 93  QCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 152
              LVEM++ +   +VIS ++Q PFM++GMPRPVRA  AE  MF D+P KPGR + F W+
Sbjct: 61  MGVLVEMENEEMTQAVISTVSQLPFMVAGMPRPVRACAAEPNMFVDKPKKPGRTVRFRWI 120

Query: 153 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 212
             +DPDF+ A+++K L ++H AE +F+LK+QL E EKL+KQQ +    ++KK+E+++ ++
Sbjct: 121 KPNDPDFDKARRVKRLARKHSAENSFMLKKQLEEAEKLSKQQAETAVTHHKKFEMMDKLL 180

Query: 213 TDGTARRLARRYNMR 228
            DG A++LA RY+++
Sbjct: 181 YDGVAQKLAGRYDLK 195

[Close]

BLAST of CmoCh08G002070 vs. NCBI nr
Match: gi|659081732|ref|XP_008441485.1| (PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo])

HSP 1 Score: 333.6 bits (854), Expect = 2.8e-88
Identity = 166/199 (83.42%), Postives = 182/199 (91.46%), Query Frame = 1


Query: 33  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 92
           MGSA DEQ+  FEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVV+VHFIPN+TEPINSS
Sbjct: 1   MGSAKDEQFSMFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVNVHFIPNYTEPINSS 60

Query: 93  QCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 152
           QCALVEMKDSKEA SVI++IAQFPFMMSGMPRPVRA PAE EMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEAKSVIAVIAQFPFMMSGMPRPVRARPAEAEMFDDRPVKPGRKISFRWL 120

Query: 153 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 212
             DDPDFEVA+++K LT++HVAEAAFLLKQ L EEEKLAKQQQ+ L+ NYKKYEIV+ VM
Sbjct: 121 ESDDPDFEVARQIKRLTKKHVAEAAFLLKQHLAEEEKLAKQQQETLRGNYKKYEIVDSVM 180

Query: 213 TDGTARRLARRYNMRVADD 232
            DGTARRLA+ YNMRV+DD
Sbjct: 181 ADGTARRLAKNYNMRVSDD 199

[Close]

BLAST of CmoCh08G002070 vs. NCBI nr
Match: gi|449441282|ref|XP_004138411.1| (PREDICTED: uncharacterized protein LOC101221287 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 9.0e-87
Identity = 163/199 (81.91%), Postives = 181/199 (90.95%), Query Frame = 1


Query: 33  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 92
           MGS  DEQ+  FEEKVKRTVYVDNLS QVTEPVLRTALDQFGTVVSVHFIPN+TEPINSS
Sbjct: 1   MGSEKDEQFAMFEEKVKRTVYVDNLSLQVTEPVLRTALDQFGTVVSVHFIPNYTEPINSS 60

Query: 93  QCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 152
           QCALVEMKDSKEA SVI++IAQFPFMMSGMPRPVRA PAEVEMFDDRP+KPGRKISF WL
Sbjct: 61  QCALVEMKDSKEAKSVITVIAQFPFMMSGMPRPVRARPAEVEMFDDRPVKPGRKISFRWL 120

Query: 153 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 212
             DDPDFEVA+++K L+++HVAEAAFL+KQ + EEEKLAKQQQ+ LK NYKKYEIV+ VM
Sbjct: 121 ESDDPDFEVARQIKRLSKKHVAEAAFLVKQHMAEEEKLAKQQQETLKGNYKKYEIVDSVM 180

Query: 213 TDGTARRLARRYNMRVADD 232
            DGTARRLA+ YNMR++DD
Sbjct: 181 ADGTARRLAKHYNMRISDD 199

[Close]

BLAST of CmoCh08G002070 vs. NCBI nr
Match: gi|590655353|ref|XP_007033963.1| (RNA-binding family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 271.6 bits (693), Expect = 1.3e-69
Identity = 136/199 (68.34%), Postives = 160/199 (80.40%), Query Frame = 1


Query: 33  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 92
           MGSA   +Y  FEEKV+RTVY+DNLSP VTE V+RTALDQ+GTV SVHFIPN+ EP N  
Sbjct: 1   MGSAEQGEYAAFEEKVRRTVYMDNLSPNVTESVVRTALDQYGTVKSVHFIPNYLEPQNIP 60

Query: 93  QCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 152
           QCALVEM+  K+   VIS I+QFPFMMSGMPRPVRA  A+VEMF DRP +PGR+I F WL
Sbjct: 61  QCALVEMETGKQVEVVISTISQFPFMMSGMPRPVRARAAKVEMFSDRPRQPGRRIHFRWL 120

Query: 153 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 212
              DPDFEVA K+K L +RH  E A +LK QL +EEKLAKQQ +ALKANYKKYE+++ +M
Sbjct: 121 DPADPDFEVANKLKHLAKRHATETAVMLKHQLEKEEKLAKQQGEALKANYKKYEMIDSLM 180

Query: 213 TDGTARRLARRYNMRVADD 232
            DGTARRLARRY++RV+DD
Sbjct: 181 ADGTARRLARRYDLRVSDD 199

[Close]

BLAST of CmoCh08G002070 vs. NCBI nr
Match: gi|296082652|emb|CBI21657.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 271.2 bits (692), Expect = 1.7e-69
Identity = 130/200 (65.00%), Postives = 158/200 (79.00%), Query Frame = 1


Query: 32  HMGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINS 91
           HM S    +Y  FE+KVKR VY+DN+SPQVT+ VL+TAL+QFGTVVS+HFIPN+ EP   
Sbjct: 60  HMESPAQNEYALFEQKVKRAVYIDNISPQVTDAVLKTALNQFGTVVSIHFIPNYVEPSKI 119

Query: 92  SQCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVW 151
            +CALVEM    EA ++IS +  +PFMMSGMPRP RA PAEVEMFDDRPIKPGR+I   W
Sbjct: 120 PRCALVEMAKQSEAEAIISDMNNYPFMMSGMPRPARARPAEVEMFDDRPIKPGRRIQCRW 179

Query: 152 LGKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGV 211
           L K+DPDFEVAKK+K L ++H +EA+F+LK QL EEEKLAKQQ + LK NYKKYE+++ V
Sbjct: 180 LDKEDPDFEVAKKLKHLVRKHASEASFMLKNQLEEEEKLAKQQAEVLKTNYKKYEMIDSV 239

Query: 212 MTDGTARRLARRYNMRVADD 232
           + DG ARRLAR YN  V+DD
Sbjct: 240 LADGAARRLARHYNFNVSDD 259

[Close]

BLAST of CmoCh08G002070 vs. NCBI nr
Match: gi|567901104|ref|XP_006443040.1| (hypothetical protein CICLE_v10022331mg [Citrus clementina])

HSP 1 Score: 267.7 bits (683), Expect = 1.9e-68
Identity = 129/199 (64.82%), Postives = 164/199 (82.41%), Query Frame = 1


Query: 33  MGSATDEQYVKFEEKVKRTVYVDNLSPQVTEPVLRTALDQFGTVVSVHFIPNFTEPINSS 92
           MGS T+ +Y  F EKVKRTVY+DNLSPQVTEPV+RTALDQFG V +V FIPN+TE  N  
Sbjct: 1   MGSTTEAEYAAFLEKVKRTVYLDNLSPQVTEPVIRTALDQFGNVKNVQFIPNYTEFRNIP 60

Query: 93  QCALVEMKDSKEANSVISLIAQFPFMMSGMPRPVRAYPAEVEMFDDRPIKPGRKISFVWL 152
            CALVEM++SK+A  V++ + +FPFMMSGMPRPVRA  AEVEMFDDRP KPG++I F WL
Sbjct: 61  HCALVEMENSKQAKDVVTSLHEFPFMMSGMPRPVRARAAEVEMFDDRPAKPGQRIQFRWL 120

Query: 153 GKDDPDFEVAKKMKCLTQRHVAEAAFLLKQQLVEEEKLAKQQQDALKANYKKYEIVEGVM 212
             +DPDFEVA+++K L ++H AEA+F+LK+QL +EE+LA QQ++ LK NY+KYE +EG+M
Sbjct: 121 DPNDPDFEVAQRLKRLARKHAAEASFVLKEQLEQEEQLANQQEETLKQNYRKYETLEGIM 180

Query: 213 TDGTARRLARRYNMRVADD 232
           +DGTA RL RRY++R+ DD
Sbjct: 181 SDGTAYRLGRRYDVRIHDD 199

The following BLAST results are available for this feature:

BLAST of CmoCh08G002070 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh08G002070 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAE7_CUCSA	6.3e-87	81.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013320 PE=4 SV=1	[more]
A0A061EIN5_THECC	9.1e-70	68.34	RNA-binding family protein isoform 1 OS=Theobroma cacao GN=TCM_020046 PE=4 SV=1	[more]
D7SWK8_VITVI	1.2e-69	65.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g03120 PE=4 SV=...	[more]
V4TX22_9ROSI	1.3e-68	64.82	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022331mg PE=4 SV=1	[more]
A0A067E8V7_CITSI	5.0e-68	64.32	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029074mg PE=4 SV=1	[more]

BLAST of CmoCh08G002070 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G05970.2	1.1e-47	47.18	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

BLAST of CmoCh08G002070 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659081732\|ref\|XP_008441485.1\|	2.8e-88	83.42	PREDICTED: uncharacterized protein LOC103485592 [Cucumis melo]	[more]
gi\|449441282\|ref\|XP_004138411.1\|	9.0e-87	81.91	PREDICTED: uncharacterized protein LOC101221287 [Cucumis sativus]	[more]
gi\|590655353\|ref\|XP_007033963.1\|	1.3e-69	68.34	RNA-binding family protein isoform 1 [Theobroma cacao]	[more]
gi\|296082652\|emb\|CBI21657.3\|	1.7e-69	65.00	unnamed protein product [Vitis vinifera]	[more]
gi\|567901104\|ref\|XP_006443040.1\|	1.9e-68	64.82	hypothetical protein CICLE_v10022331mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh08G002070.1	CmoCh08G002070.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 52..110 score: 5.
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 51..129 score: 5.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 50..133 score: 11
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 45..121 score: 7.2
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 45..127 score: 1.29
None	No IPR available	unknown	Coil	Coil	coord: 181..201 scor
None	No IPR available	PANTHER	PTHR36309	FAMILY NOT NAMED	coord: 39..231 score: 1.6
None	No IPR available	PANTHER	PTHR36309:SF1	SUBFAMILY NOT NAMED	coord: 39..231 score: 1.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh08G002070	CmaCh08G002020	Cucurbita maxima (Rimu)	cmacmoB913
CmoCh08G002070	ClCG08G004710	Watermelon (Charleston Gray)	cmowcgB812
CmoCh08G002070	Lsi08G003730	Bottle gourd (USVL1VR-Ls)	cmolsiB832
CmoCh08G002070	Cp4.1LG17g10870	Cucurbita pepo (Zucchini)	cmocpeB851
CmoCh08G002070	Cla97C08G147710	Watermelon (97103) v2	cmowmbB909
CmoCh08G002070	Bhi04G001619	Wax gourd	cmowgoB1115
CmoCh08G002070	Carg05027	Silver-seed gourd	carcmoB0119

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh08G002070	Cucurbita moschata (Rifu)	cmocmoB327
CmoCh08G002070	Cucumber (Gy14) v1	cgycmoB1011
CmoCh08G002070	Cucurbita maxima (Rimu)	cmacmoB380
CmoCh08G002070	Wild cucumber (PI 183967)	cmocpiB912
CmoCh08G002070	Cucumber (Chinese Long) v2	cmocuB899
CmoCh08G002070	Melon (DHL92) v3.5.1	cmomeB822
CmoCh08G002070	Cucurbita pepo (Zucchini)	cmocpeB846
CmoCh08G002070	Cucumber (Gy14) v2	cgybcmoB862
CmoCh08G002070	Melon (DHL92) v3.6.1	cmomedB928
CmoCh08G002070	Cucumber (Chinese Long) v3	cmocucB1064