Cp4.1LG17g08700 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g08700
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionSerine-rich protein-related
LocationCp4.1LG17 : 5101943 .. 5102239 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAACAAAACCGCTCCATCTTCCCGCCGCCTCTGTCTCTGTGCTCCGACCACTCATCCTGGCTCCTTCCGCTGCAGTCTCCACCGTCGTATGCGGAAGGCCTCCAACAAAATGCCGCCGCTTCCCCCGCCTGGAAACCTATCGAAGGCCGCCTCCGCGACAGATCTCGTTAAGGCGTTTCTTATGCAGGTAATCAAGCCGTCGAGTCAAGATCTCCAGAGAAGGAGGAATTTCCAGCCTAAGCCTTCTCGATTCTGTAATGCCGCTTCCGATTATGGATTGGCGGTTTCTTGA

mRNA sequence

ATGGCGAACAAAACCGCTCCATCTTCCCGCCGCCTCTGTCTCTGTGCTCCGACCACTCATCCTGGCTCCTTCCGCTGCAGTCTCCACCGTCGTATGCGGAAGGCCTCCAACAAAATGCCGCCGCTTCCCCCGCCTGGAAACCTATCGAAGGCCGCCTCCGCGACAGATCTCGTTAAGGCGTTTCTTATGCAGGTAATCAAGCCGTCGAGTCAAGATCTCCAGAGAAGGAGGAATTTCCAGCCTAAGCCTTCTCGATTCTGTAATGCCGCTTCCGATTATGGATTGGCGGTTTCTTGA

Coding sequence (CDS)

ATGGCGAACAAAACCGCTCCATCTTCCCGCCGCCTCTGTCTCTGTGCTCCGACCACTCATCCTGGCTCCTTCCGCTGCAGTCTCCACCGTCGTATGCGGAAGGCCTCCAACAAAATGCCGCCGCTTCCCCCGCCTGGAAACCTATCGAAGGCCGCCTCCGCGACAGATCTCGTTAAGGCGTTTCTTATGCAGGTAATCAAGCCGTCGAGTCAAGATCTCCAGAGAAGGAGGAATTTCCAGCCTAAGCCTTCTCGATTCTGTAATGCCGCTTCCGATTATGGATTGGCGGTTTCTTGA

Protein sequence

MANKTAPSSRRLCLCAPTTHPGSFRCSLHRRMRKASNKMPPLPPPGNLSKAASATDLVKAFLMQVIKPSSQDLQRRRNFQPKPSRFCNAASDYGLAVS
Homology
[Close]
BLAST of Cp4.1LG17g08700 vs. TrEMBL
Match: A0A0A0K698_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432210 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.6e-28
Identity = 73/106 (68.87%), Postives = 85/106 (80.19%), Query Frame = 1 

Query: 1   MANKTAPSSRRLCLCAPTTHPGSFRCSLHRRMRKASNKMPPLPPP---GNLSKAASAT-- 60
           M NKTA SS RLCLCAPTTHPGSFRCSLHRR+  +S+K PPLPPP   G+ SKAA+ T  
Sbjct: 1   MPNKTASSS-RLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAAATTTD 60

Query: 61  -DLVKAFLMQVIKPSSQDLQRRRNFQPKPSRFCN--AASDYGLAVS 99
             L+KAFLMQ++KPSS DLQRR +F+PKPSRFC+  +ASD  LAVS
Sbjct: 61  HHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASDPRLAVS 105

[Close]
BLAST of Cp4.1LG17g08700 vs. TrEMBL
Match: A0A061G8R4_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_027325 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.2e-20
Identity = 64/110 (58.18%), Postives = 72/110 (65.45%), Query Frame = 1 

Query: 1   MANK--TAPSSRRLCLCAPTTHPGSFRCSLHRRMRKASNKMPPLPPPGNL-SKAA----- 60
           MA K   +PSS R CLC+PTTHPGSFRCS HR   KAS K    P    + SKAA     
Sbjct: 1   MATKRSASPSSARTCLCSPTTHPGSFRCSFHRSFGKASTKSAAAPHANRVESKAATMMMM 60

Query: 61  ---SATDLVKAFLMQVIKPSSQDLQRRRNFQPKPSRFCNA-ASDYGLAVS 99
              S   L+KAFLMQ+IKPSS DLQRRRNFQ KP+RFC   +S  G+AVS
Sbjct: 61  TTASKACLIKAFLMQIIKPSSHDLQRRRNFQRKPTRFCPLNSSANGVAVS 110

[Close]
BLAST of Cp4.1LG17g08700 vs. TrEMBL
Match: B9SZN1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1372180 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.0e-19
Identity = 62/111 (55.86%), Postives = 72/111 (64.86%), Query Frame = 1 

Query: 1   MANKTAPSSR--------RLCLCAPTTHPGSFRCSLHRRMRKASNKMPPL---PPPGNLS 60
           MA+K A S+         R CLC+PTTHPGSFRCSLHR   + SN+       P    LS
Sbjct: 1   MASKNASSNSKSHTHQQARTCLCSPTTHPGSFRCSLHRNFNRFSNRSRTAHVSPRKWELS 60

Query: 61  KAASATDLVKAFLMQVIKPSSQDLQRRRNFQPKPSRFC--NAASDYGLAVS 99
             A A  L KAFL+Q+IKPSS DLQRRRNFQP+P+RFC  NA  D G+AVS
Sbjct: 61  VIAKANSL-KAFLLQIIKPSSHDLQRRRNFQPRPTRFCLMNANRD-GVAVS 109

[Close]
BLAST of Cp4.1LG17g08700 vs. TrEMBL
Match: I3NMS2_HEVBR (Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.9e-18
Identity = 59/110 (53.64%), Postives = 70/110 (63.64%), Query Frame = 1 

Query: 1   MANKTAPSSR----------RLCLCAPTTHPGSFRCSLHRRMRKASNKMPPLPPPGNLSK 60
           MA+K APS            R+CLC+PT HPGSFRCSLHR  R+   +       G L+ 
Sbjct: 1   MASKRAPSDSKSQQQQSAQGRICLCSPTKHPGSFRCSLHRNFRRVPGRSSS-SNKGELAV 60

Query: 61  AASATDLVKAFLMQVIKPSSQDLQRRRNFQPKPSRFC--NAASDYGLAVS 99
            A A  L +AFL+Q+IKPSS DLQRRRNF+P+PSRFC  NA  D G AVS
Sbjct: 61  IAKANSL-RAFLLQIIKPSSHDLQRRRNFRPRPSRFCLMNANRD-GFAVS 107

[Close]
BLAST of Cp4.1LG17g08700 vs. TrEMBL
Match: A0A0D2Q6Y8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G013600 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-17
Identity = 58/110 (52.73%), Postives = 68/110 (61.82%), Query Frame = 1 

Query: 1   MANKTAP-----SSRRLCLCAPTTHPGSFRCSLHRRMRKA----SNKMPPLPPPGNLSKA 60
           MA KTA      S  R CLC+PTTHPGSFRCSLHR   K     S  +   P    L+  
Sbjct: 1   MATKTASPLSSKSQARTCLCSPTTHPGSFRCSLHRNFNKPPTGRSRAVRIAPNSWELALQ 60

Query: 61  ASATDLVKAFLMQVIKPSSQDLQRRRNFQPKPSRFC---NAASDYGLAVS 99
           A A   +KA L+Q+IKPSS DLQRRR+FQPKPSRFC      + +G+AVS
Sbjct: 61  AKANS-IKALLLQIIKPSSHDLQRRRDFQPKPSRFCMLNGNRNGFGVAVS 109

[Close]
BLAST of Cp4.1LG17g08700 vs. TAIR10
Match: AT5G25280.1 (AT5G25280.1 serine-rich protein-related)

HSP 1 Score: 60.8 bits (146), Expect = 5.2e-10
Identity = 34/94 (36.17%), Postives = 49/94 (52.13%), Query Frame = 1 

Query: 7   PSSRRLCLCAPTTHPGSFRCSLHRRMRKASNKMPPLPPPGNLSKAASAT----------- 66
           P SRR C+C+PTTHPGSFRCSLH+ +     +         L+   SA            
Sbjct: 120 PDSRRRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVE 179

Query: 67  -DLVKAFLMQVIKPSSQDLQRRRNFQPKPSRFCN 89
            + V+  L  +I+PSS  L+RR  ++P+ SR  +
Sbjct: 180 GEWVRRALTTLIRPSSHQLKRRSAYEPRRSRLAS 213

[Close]
BLAST of Cp4.1LG17g08700 vs. TAIR10
Match: AT5G11090.1 (AT5G11090.1 serine-rich protein-related)

HSP 1 Score: 58.5 bits (140), Expect = 2.6e-09
Identity = 33/87 (37.93%), Postives = 46/87 (52.87%), Query Frame = 1 

Query: 11  RLCLCAPTTHPGSFRCSLHRRMRKASNKMPPLPPPGNLSKAASAT------------DLV 70
           R C+C+PTTHPGSFRCSLH+ +     +         L+   SA             + V
Sbjct: 121 RRCMCSPTTHPGSFRCSLHKNVANPHGQGTASYTTNGLNMRRSAMTNSLVRIGGVEGEWV 180

Query: 71  KAFLMQVIKPSSQDLQRRRNFQPKPSR 86
           +  L  +I+PSS  L+RR  +QP+PSR
Sbjct: 181 RRALTTLIRPSSHHLKRRAAYQPRPSR 207

[Close]
BLAST of Cp4.1LG17g08700 vs. TAIR10
Match: AT5G20370.1 (AT5G20370.1 serine-rich protein-related)

HSP 1 Score: 52.4 bits (124), Expect = 1.9e-07
Identity = 35/104 (33.65%), Postives = 48/104 (46.15%), Query Frame = 1 

Query: 9   SRRLCLCAPTTHPGSFRCSLHRRMRKASNK------------------------MPPLPP 68
           ++R CLC+PTTHPGSFRCS HRR+    +K                        +  L  
Sbjct: 67  TKRKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASSTVKRNNRGDNTIRVNVGLNLRKLAL 126

Query: 69  PGNLSKAAS--ATDLVKAFLMQVIKPSSQDLQRRRNFQPKPSRF 87
             +L+K  S  A    ++    + KPSS    RR  F+P+ SRF
Sbjct: 127 MNSLAKIGSVEAERFRRSLAANLAKPSSLHSHRRPEFRPRLSRF 170

[Close]
BLAST of Cp4.1LG17g08700 vs. NCBI nr
Match: gi|700190007|gb|KGN45240.1| (hypothetical protein Csa_7G432210 [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 2.4e-28
Identity = 73/106 (68.87%), Postives = 85/106 (80.19%), Query Frame = 1 

Query: 1   MANKTAPSSRRLCLCAPTTHPGSFRCSLHRRMRKASNKMPPLPPP---GNLSKAASAT-- 60
           M NKTA SS RLCLCAPTTHPGSFRCSLHRR+  +S+K PPLPPP   G+ SKAA+ T  
Sbjct: 1   MPNKTASSS-RLCLCAPTTHPGSFRCSLHRRLSNSSHKTPPLPPPSPRGSQSKAAATTTD 60

Query: 61  -DLVKAFLMQVIKPSSQDLQRRRNFQPKPSRFCN--AASDYGLAVS 99
             L+KAFLMQ++KPSS DLQRR +F+PKPSRFC+  +ASD  LAVS
Sbjct: 61  HHLLKAFLMQIVKPSSHDLQRRGSFEPKPSRFCSVVSASDPRLAVS 105

[Close]
BLAST of Cp4.1LG17g08700 vs. NCBI nr
Match: gi|659122451|ref|XP_008461151.1| (PREDICTED: uncharacterized protein LOC103499822 [Cucumis melo])

HSP 1 Score: 126.7 bits (317), Expect = 2.2e-26
Identity = 73/105 (69.52%), Postives = 81/105 (77.14%), Query Frame = 1 

Query: 1   MANKTAPSSRRLCLCAPTTHPGSFRCSLHRRMRKASNKMP-PLPPP-GNLSKAASATD-- 60
           M NKTA SS RLCLCAPTTHPGSFRCSLHRR   +S+K P PLPPP G+ SKAA+ T   
Sbjct: 1   MPNKTASSS-RLCLCAPTTHPGSFRCSLHRRPSNSSHKTPQPLPPPHGSQSKAATTTTDH 60

Query: 61  -LVKAFLMQVIKPSSQDLQRRRNFQPKPSRFCN--AASDYGLAVS 99
             +KAFLMQ++KPSS  LQRR NFQPKPSRFCN  +A D  LAVS
Sbjct: 61  YFLKAFLMQIVKPSSHGLQRRGNFQPKPSRFCNIVSAPDPRLAVS 104

[Close]
BLAST of Cp4.1LG17g08700 vs. NCBI nr
Match: gi|1009182309|ref|XP_015872641.1| (PREDICTED: uncharacterized protein LOC107409728 [Ziziphus jujuba])

HSP 1 Score: 108.6 bits (270), Expect = 6.2e-21
Identity = 60/112 (53.57%), Postives = 71/112 (63.39%), Query Frame = 1 

Query: 1   MANKTAPSSRRLCLCAPTTHPGSFRCSLHRRMRKAS--------NKMPPLPPPGNLSKAA 60
           MA KT  SS R CLC+PT HPGSFRCSLHR  R+A         N   P      +  A 
Sbjct: 1   MAAKTPSSSSRTCLCSPTNHPGSFRCSLHRAQRRALAARSTVVVNSAKPQSKTVMMMMAT 60

Query: 61  SATDLVKAFLMQVIKPSSQDLQRRRNFQPKPSRFC------NAASDYGLAVS 99
           S  +L+KAFLMQ+IKPSS DLQRRR+FQP+P+RFC      N   D+G+AVS
Sbjct: 61  SKINLLKAFLMQIIKPSSHDLQRRRSFQPRPTRFCLMNNNNNNNGDHGVAVS 112

[Close]
BLAST of Cp4.1LG17g08700 vs. NCBI nr
Match: gi|590615847|ref|XP_007023339.1| (Uncharacterized protein TCM_027325 [Theobroma cacao])

HSP 1 Score: 106.3 bits (264), Expect = 3.1e-20
Identity = 64/110 (58.18%), Postives = 72/110 (65.45%), Query Frame = 1 

Query: 1   MANK--TAPSSRRLCLCAPTTHPGSFRCSLHRRMRKASNKMPPLPPPGNL-SKAA----- 60
           MA K   +PSS R CLC+PTTHPGSFRCS HR   KAS K    P    + SKAA     
Sbjct: 1   MATKRSASPSSARTCLCSPTTHPGSFRCSFHRSFGKASTKSAAAPHANRVESKAATMMMM 60

Query: 61  ---SATDLVKAFLMQVIKPSSQDLQRRRNFQPKPSRFCNA-ASDYGLAVS 99
              S   L+KAFLMQ+IKPSS DLQRRRNFQ KP+RFC   +S  G+AVS
Sbjct: 61  TTASKACLIKAFLMQIIKPSSHDLQRRRNFQRKPTRFCPLNSSANGVAVS 110

[Close]
BLAST of Cp4.1LG17g08700 vs. NCBI nr
Match: gi|1000942539|ref|XP_015582253.1| (PREDICTED: uncharacterized protein LOC8286598 [Ricinus communis])

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-18
Identity = 62/111 (55.86%), Postives = 72/111 (64.86%), Query Frame = 1 

Query: 1   MANKTAPSSR--------RLCLCAPTTHPGSFRCSLHRRMRKASNKMPPL---PPPGNLS 60
           MA+K A S+         R CLC+PTTHPGSFRCSLHR   + SN+       P    LS
Sbjct: 1   MASKNASSNSKSHTHQQARTCLCSPTTHPGSFRCSLHRNFNRFSNRSRTAHVSPRKWELS 60

Query: 61  KAASATDLVKAFLMQVIKPSSQDLQRRRNFQPKPSRFC--NAASDYGLAVS 99
             A A  L KAFL+Q+IKPSS DLQRRRNFQP+P+RFC  NA  D G+AVS
Sbjct: 61  VIAKANSL-KAFLLQIIKPSSHDLQRRRNFQPRPTRFCLMNANRD-GVAVS 109

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g08700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG17g08700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K698_CUCSA1.6e-2868.87Uncharacterized protein OS=Cucumis sativus GN=Csa_7G432210 PE=4 SV=1[more]
A0A061G8R4_THECC2.2e-2058.18Uncharacterized protein OS=Theobroma cacao GN=TCM_027325 PE=4 SV=1[more]
B9SZN1_RICCO9.0e-1955.86Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1372180 PE=4 SV=1[more]
I3NMS2_HEVBR5.9e-1853.64Uncharacterized protein OS=Hevea brasiliensis PE=2 SV=1[more]
A0A0D2Q6Y8_GOSRA1.3e-1752.73Uncharacterized protein OS=Gossypium raimondii GN=B456_009G013600 PE=4 SV=1[more]
BLAST of Cp4.1LG17g08700 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G25280.15.2e-1036.17 serine-rich protein-related[more]
AT5G11090.12.6e-0937.93 serine-rich protein-related[more]
AT5G20370.11.9e-0733.65 serine-rich protein-related[more]
BLAST of Cp4.1LG17g08700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190007|gb|KGN45240.1|2.4e-2868.87hypothetical protein Csa_7G432210 [Cucumis sativus][more]
gi|659122451|ref|XP_008461151.1|2.2e-2669.52PREDICTED: uncharacterized protein LOC103499822 [Cucumis melo][more]
gi|1009182309|ref|XP_015872641.1|6.2e-2153.57PREDICTED: uncharacterized protein LOC107409728 [Ziziphus jujuba][more]
gi|590615847|ref|XP_007023339.1|3.1e-2058.18Uncharacterized protein TCM_027325 [Theobroma cacao][more]
gi|1000942539|ref|XP_015582253.1|1.3e-1855.86PREDICTED: uncharacterized protein LOC8286598 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g08700.1Cp4.1LG17g08700.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33132FAMILY NOT NAMEDcoord: 3..87
score: 5.5
NoneNo IPR availablePANTHERPTHR33132:SF5SUBFAMILY NOT NAMEDcoord: 3..87
score: 5.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g08700Cucsa.105710Cucumber (Gy14) v1cgycpeB0230
Cp4.1LG17g08700CmaCh08G006060Cucurbita maxima (Rimu)cmacpeB917
Cp4.1LG17g08700Csa7G432210Cucumber (Chinese Long) v2cpecuB343
Cp4.1LG17g08700MELO3C023447Melon (DHL92) v3.5.1cpemeB299
Cp4.1LG17g08700CSPI07G20320Wild cucumber (PI 183967)cpecpiB344
Cp4.1LG17g08700Lsi02G026870Bottle gourd (USVL1VR-Ls)cpelsiB262
Cp4.1LG17g08700MELO3C023447.2Melon (DHL92) v3.6.1cpemedB347
Cp4.1LG17g08700CsaV3_7G032120Cucumber (Chinese Long) v3cpecucB0422
Cp4.1LG17g08700CsGy7G018610Cucumber (Gy14) v2cgybcpeB931
Cp4.1LG17g08700Carg09605Silver-seed gourdcarcpeB1425
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG17g08700Cp4.1LG12g07390Cucurbita pepo (Zucchini)cpecpeB157
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g08700Cucurbita pepo (Zucchini)cpecpeB332
Cp4.1LG17g08700Cucurbita maxima (Rimu)cmacpeB376
Cp4.1LG17g08700Cucurbita moschata (Rifu)cmocpeB339
Cp4.1LG17g08700Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g08700Watermelon (Charleston Gray)cpewcgB280
Cp4.1LG17g08700Watermelon (97103) v1cpewmB312
Cp4.1LG17g08700Watermelon (97103) v1cpewmB325
Cp4.1LG17g08700Silver-seed gourdcarcpeB0173
Cp4.1LG17g08700Silver-seed gourdcarcpeB0210
Cp4.1LG17g08700Silver-seed gourdcarcpeB0283
Cp4.1LG17g08700Wax gourdcpewgoB0414