Cp4.1LG17g04060 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG17g04060
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionU6 snRNA-associated Sm-like protein LSm1
LocationCp4.1LG17 : 3338100 .. 3341757 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATGAGATGAAGTACCAAACCAAATCCAGACCAACACTGCAGCCGGAGTTGAATCTCTTCCGGGCTTCCGCCACGTTTAAGTCTGTCTCTCACGAAGCCCTTTTTTTCCCCCAATTTCATCTTCGCTCTCTTCGTAGAAATTGAATCTTTGCCCTTCTTTCCCCTTTTCGATTCGTTTCGAATCGTCTGTTCTTAGTTTCGAAGGATTTGTGGATGGTGAAGACAGATTATTTGAGGAAATTGTGAAAGGATTTTGAGGGATTGGTTGAGAATTGGACAGGAATCTAAGCAGGCAATGCCCATTTATTTGGTTTGGAGTTAAGTGTTAAAGGTCGTCGATGTCTTGGGCAAGCGCGGAAGATATTTACCTTTCAACTTCTCTTGCCAATTACCTTGACAGTATGTTCCTTCTCTTTTGATGCTTACAAATTAATACTCATTTTCCTTTTTAATTTTGAAATTTAATATCACTTGCTTCATGGGGTTTGCCTCTTTTGTGTAATGTGATATCTATCTCTTGATCATCATGGGGTTTGAGAGTATCAAATTGTTATGTATTGCAGCTCTTTGATTCAAAAACCTTTCACCCAATCAAGCTTATTTAGACACATGAATGAGCATCCATTTGTCCTTTCTGGCTAACTGTTTAGTAATGTAAATGAAGATATTTGAATCAAATGCACTTTGTTGTAGTGGTTTTAGCAAACATTTGTGTTTTATTTTGTGAATGCCTTTGATTCCCTCTTCTTTTCAAGAGATTATGGAACTTCTGTGAAATTCTACCCACCTTTTGAAGAGCTTGCCATGGTGAGGTGAGTCTCAGGGTGAGTTTTGACTTTTGACTGTTAGCAGATATTGTCTTCTTTGGACTTTTCTTTTCGGGCTTCCCCTCAAAGTTTTTAAAACGTGTTTACTCAGGAGAGGTTTCCACACCCTTACAAAGAATGTTTTGTTCCTCTCTCCAACTGATGTGGGATCTACAACCCACCCCCTTCGTGGCCTAGTGTCTTCTCTGGCACTCATTCCCTTCTCCAACCAACGTGGGATCTCACAATCCACCCCCTTCGGAGCCTAGTGTCCTCTCTGGCACTTGTTCCCCTCTCCAACGAATGTGGGATCTCACAATCCCACCCCCCTTCGAGGCCAGCGTCTCAGGGTGAAAGACTCAGTGTAACAGTCCAAACCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTCCCCTCAAGGTTTTTAAAACGTGTCTACTAGAGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTCCTCTCTCCAACCGATGTGGGATCCACAATTCGCCCCCTTTGTGGCCCAGTGTCCTCGCTGGCACTCAATCCCTTCTCCAACCAACGTGGGATCTCACAATCCACCCTCTTCGGAATCCAGTGTCCTTGCTGGCACTCGTTCCCCTCTCCAACGAATGTGGGATCTCACAATCTCACCTCCCTTAGAAACCGGTGTCCTCGTTGACACTCGTTTCCCTCTCCAATCGATGTGGGATCTTACACTCTCTCTTCACCTCACCTATCACCATAAGCAATTATATAGCTCTGCCTTGAAACCCTTTGTTTCAACTTTGATTTGACATGAGCACTGGTCTTCCCTGTGCCAAATGCTAAAAGGCTGTTTCACAGCTACCTTCTAAATCATTGTTCAGCATGTCTGCATTCTTTAAATTGTTTAGAGAAGGATTAAAAAGCTAGTGTTGCTATTTGCTAGAATTGTGGTTCTAATGATCGTTTCGTTCTATAGAGAAGGTTCTTGTACTACTTCGAGATGGTCGAAAGCTATTAGGAATCCTCCGTTCATTCGATCAATTTGGTATAGTTCTTCCTGAAATTTTATACGGTTTTAACATTCGCGTGGAGAACTAATTGTTTCTATGTTTCAGCAAATGCTGTTCTTGAAGGATCCTGTGAAAGAGTGATTGTTGGTGACCTTTACAGCGATATTCCTTTAGGTCTCTATGTAATTCGAGGCGAAAACGTCGTTTTACTGGGCGAGCTGGTAGGACAAAATCTTAGAGATTCACTTGTTTGTCTTCATTATTTGTCTGTTAGCTGTCCAACCCTCTTAAAATTTTTGTTTTGGGCTTTATAGAACATGGAGAAAGAGGAGCTCCCTCCACACATGACTCATGTCTCTGCTATGGAGATTAAAAGGGTAAGTGATGTTGACTCGTCCATTGGATTTCTCAAAGGTTTCCACATTTATTGGAAGAACACGACATAGATTTGCTTATGTCTGAAGATTAGTTTGGTGTGCTTAGTATCACGGTTATGCTCATCTAGGGTGTGTTGCCCGTGGTCGCATGCTCATGCCACGCCAAACCCTTTTTGCTTATGTCTGAAGATTAGTGTTTTGTGTGCATAGTGTCACAGTCATGCTCATCCAGAGCGTGTTGCCCGTGGCCGCATGCCCATGCCACGCTGAACCCTTTTTGCTTATGTCTGAAGATTAGTGTTCTGTGTGCATAGTGTCACGGTCTTGCTCATCCAGGACATGTTGCCCGTGGTCGCATGCCCATGCCATGCCGAACCCTTTTTGCTTATGTCTGAAGATTAGTGTTCTGTGTGCATAGTGTTACAGTCATGCTCATCCAAGGGCTGTTGCCCGTGGCAGTGCATAGTGTCACGGTCATGCTCATCCAGGACGTGTTGCCTGTGGCTGCATGCCCATGCCACGCCAAACCCTTTTTGCTTATATCGGAAGATTAATGTTCTGTGTGCATAGTGTCACGGTCATGCTCATCCAGGGCGTGTTGCCCGTGGCCACATGCCCATGCCACGCCAAACCCTTTTTGCTTATATCTGAAGATTAATGTTCTGTGTGCATAGTGTCACGGTCATGCTCATCCAGGGCGTGTTGCCCATGGCCGTATGCCCATGTCACGCCAAACCCTTTTTACTTATGTCTGAAGATTAATGTCCTGTGTGCATAGTGTCACAATCATGCTCATCCAGGGCATGTTGCCCGTGGCCGCACACCCATGTCATGCCAAACCCTTTTTACTTATGTCTGAAGATTAATGTTCTGTGTGCATAGTGTCATTGTCATGCTCATCCAGGACGTGTTGTCCGTGGCAGTGCATAGTGACACGGTCATACTCATCTAGGGCATGTTGCCCGTAGCCGCGTGCTCATTCCACGCCAAACCCTTTTTGCTTACACGTTGCATGTAAAACTTTTGGTATTTACAAACTAGAACTGTTATTGCAGGCTCAAAAAGCAGAGAGAGAGGCTACAGATCTTAAAGGGACAATCAGGAAAAGACTTGAGTTCCTTGATCTGGACTAATAGCTGCTGTGTTCATAATCTTGGATTTGTTAGCTTTCTTGTTTGCAAGTTCTTCAAGTTCAACAGCTGCTCGCTCATTGCCCAGTAAGTTAATTTGATCATATGTTGGTTTTTTATGAACAATTGAGAGCCTATTTTTGTGGCCATTAGTATCTAAACATTATATTGTCGACCTTCGATTCCTCGTGTAATGTTTTATTCGATAAATAAAAAACGTTTCTTCTTAATCCAACCCCAACCCGGGTTCTTGAGTTATGGAGGCTTCTTTCTTATTGTGCTTTCGGGGCGGTACACGTACCTAGATGTCGTGTGTTTGAACCTTTGAGCGAGCTTTTAATAAGA

mRNA sequence

CATGAGATGAAGTACCAAACCAAATCCAGACCAACACTGCAGCCGGAGTTGAATCTCTTCCGGGCTTCCGCCACGTTTAAGTCTGTCTCTCACGAAGCCCTTTTTTTCCCCCAATTTCATCTTCGCTCTCTTCGTAGAAATTGAATCTTTGCCCTTCTTTCCCCTTTTCGATTCGTTTCGAATCGTCTGTTCTTAGTTTCGAAGGATTTGTGGATGGTGAAGACAGATTATTTGAGGAAATTGTGAAAGGATTTTGAGGGATTGGTTGAGAATTGGACAGGAATCTAAGCAGGCAATGCCCATTTATTTGGTTTGGAGTTAAGTGTTAAAGGTCGTCGATGTCTTGGGCAAGCGCGGAAGATATTTACCTTTCAACTTCTCTTGCCAATTACCTTGACAAGAAGGTTCTTGTACTACTTCGAGATGGTCGAAAGCTATTAGGAATCCTCCGTTCATTCGATCAATTTGCAAATGCTGTTCTTGAAGGATCCTGTGAAAGAGTGATTGTTGGTGACCTTTACAGCGATATTCCTTTAGGTCTCTATGTAATTCGAGGCGAAAACGTCGTTTTACTGGGCGAGCTGAACATGGAGAAAGAGGAGCTCCCTCCACACATGACTCATGTCTCTGCTATGGAGATTAAAAGGGCTCAAAAAGCAGAGAGAGAGGCTACAGATCTTAAAGGGACAATCAGGAAAAGACTTGAGTTCCTTGATCTGGACTAATAGCTGCTGTGTTCATAATCTTGGATTTGTTAGCTTTCTTGTTTGCAAGTTCTTCAAGTTCAACAGCTGCTCGCTCATTGCCCAGTAAGTTAATTTGATCATATGTTGGTTTTTTATGAACAATTGAGAGCCTATTTTTGTGGCCATTAGTATCTAAACATTATATTGTCGACCTTCGATTCCTCGTGTAATGTTTTATTCGATAAATAAAAAACGTTTCTTCTTAATCCAACCCCAACCCGGGTTCTTGAGTTATGGAGGCTTCTTTCTTATTGTGCTTTCGGGGCGGTACACGTACCTAGATGTCGTGTGTTTGAACCTTTGAGCGAGCTTTTAATAAGA

Coding sequence (CDS)

ATGTCTTGGGCAAGCGCGGAAGATATTTACCTTTCAACTTCTCTTGCCAATTACCTTGACAAGAAGGTTCTTGTACTACTTCGAGATGGTCGAAAGCTATTAGGAATCCTCCGTTCATTCGATCAATTTGCAAATGCTGTTCTTGAAGGATCCTGTGAAAGAGTGATTGTTGGTGACCTTTACAGCGATATTCCTTTAGGTCTCTATGTAATTCGAGGCGAAAACGTCGTTTTACTGGGCGAGCTGAACATGGAGAAAGAGGAGCTCCCTCCACACATGACTCATGTCTCTGCTATGGAGATTAAAAGGGCTCAAAAAGCAGAGAGAGAGGCTACAGATCTTAAAGGGACAATCAGGAAAAGACTTGAGTTCCTTGATCTGGACTAA

Protein sequence

MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRKRLEFLDLD
Homology
[Close]
BLAST of Cp4.1LG17g04060 vs. Swiss-Prot
Match: LSM1B_ARATH (Sm-like protein LSM1B OS=Arabidopsis thaliana GN=LSM1B PE=1 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.1e-52
Identity = 101/128 (78.91%), Postives = 116/128 (90.62%), Query Frame = 1 

Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA  E+IYLSTSLA+YLD+K+LVLLRDGRKL+G LRSFDQFANAVLEG+CERVIVG+ 
Sbjct: 1   MSWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQ 60

Query: 61  YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRK 120
           Y DIPLGLYVIRGENVVL+GEL+ E+EELPPHM  VS  EIKRAQK EREA++L+GT+RK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLD D
Sbjct: 121 RMEFLDFD 128

[Close]
BLAST of Cp4.1LG17g04060 vs. Swiss-Prot
Match: LSM1A_ARATH (Sm-like protein LSM1A OS=Arabidopsis thaliana GN=LSM1A PE=1 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 8.3e-50
Identity = 99/128 (77.34%), Postives = 113/128 (88.28%), Query Frame = 1 

Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA+ +DI+ STSLA YLDKK+LVLLRDGRKL+G+LRSFDQFANAVLE + ERVIVGDL
Sbjct: 1   MSWAAPDDIFFSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRK 120
           Y DIPLGLY+IRGENVVL+GEL++EKEELP HM  V   EIKRAQKAE+E   LKGT+RK
Sbjct: 61  YCDIPLGLYIIRGENVVLIGELDVEKEELPAHMVQVPEAEIKRAQKAEKEEMLLKGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLDLD
Sbjct: 121 RMEFLDLD 128

[Close]
BLAST of Cp4.1LG17g04060 vs. Swiss-Prot
Match: LSM1_SCHPO (U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.5e-22
Identity = 56/115 (48.70%), Postives = 83/115 (72.17%), Query Frame = 1 

Query: 12  STSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVI 71
           S SL +Y+D+KV+V+LRDG+KL+GILRSFDQFAN +L+ + ER+ V D+Y DI  G+Y++
Sbjct: 13  SGSLVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIV 72

Query: 72  RGENVVLLGELNMEKE-ELPPHMTHVSAMEIKRAQKAEREATDLKGTIRKRLEFL 126
           RGENVVLLGEL+++KE +    +  + A E+    K   E  + K  IR++ ++L
Sbjct: 73  RGENVVLLGELDLDKEYDAVKQLRRMPAEELYPLAKLHEE--EKKKNIREKGKYL 125

[Close]
BLAST of Cp4.1LG17g04060 vs. Swiss-Prot
Match: LSM1_DICDI (Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 7.3e-22
Identity = 51/112 (45.54%), Postives = 80/112 (71.43%), Query Frame = 1 

Query: 11  LSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYV 70
           +S+ L + +DKK++V+LRDGRK +GI+R+FDQFAN VL+ + ER+ VGD YSD  LGL+ 
Sbjct: 1   MSSGLGDEVDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFF 60

Query: 71  IRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRKRL 123
           IRG+NVV+LGE++ +KE     +  +S  EI +A   E+   + +  +++R+
Sbjct: 61  IRGDNVVILGEIDPDKEVQEKKLKKISWDEITKAAALEKIKKEEEEQLKRRI 112

[Close]
BLAST of Cp4.1LG17g04060 vs. Swiss-Prot
Match: LSM1_BOVIN (U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.6e-21
Identity = 55/99 (55.56%), Postives = 70/99 (70.71%), Query Frame = 1 

Query: 12  STSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVI 71
           + SL   +DKK LVLLRDGR L+G LRS DQFAN VL  + ER+ VG  Y DIP G++V+
Sbjct: 7   TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVV 66

Query: 72  RGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAERE 111
           RGENVVLLGE+++EKE   P +  VS  EI   Q+ E++
Sbjct: 67  RGENVVLLGEIDLEKESDTP-LQQVSIEEILEEQRVEQQ 104

[Close]
BLAST of Cp4.1LG17g04060 vs. TrEMBL
Match: A0A0A0KAS4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G448830 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 1.7e-62
Identity = 125/128 (97.66%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL
Sbjct: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRK 120
           YSDIPLGLYVIRGENVVLLGEL++EKEELPPHMTHVSA+EIKRAQKAEREATDLKGTIRK
Sbjct: 61  YSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVEIKRAQKAEREATDLKGTIRK 120

Query: 121 RLEFLDLD 129
           RLEFLDLD
Sbjct: 121 RLEFLDLD 128

[Close]
BLAST of Cp4.1LG17g04060 vs. TrEMBL
Match: A0A067KWZ8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24676 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.4e-56
Identity = 113/128 (88.28%), Postives = 122/128 (95.31%), Query Frame = 1 

Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA  EDIYLSTSLA+YLDKK+LVLLRDGRKLLGILRSFDQFANAVLEG+CERVIVGDL
Sbjct: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRK 120
           Y DIPLGLYVIRGENVVL+GELN+E+EELP HMT VSA EI+RAQKAEREATDLKGT+RK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGELNLEREELPSHMTRVSAAEIRRAQKAEREATDLKGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLDLD
Sbjct: 121 RMEFLDLD 128

[Close]
BLAST of Cp4.1LG17g04060 vs. TrEMBL
Match: B9T3A8_RICCO (Lsm1, putative OS=Ricinus communis GN=RCOM_0392140 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.4e-56
Identity = 111/128 (86.72%), Postives = 123/128 (96.09%), Query Frame = 1 

Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA  EDIYLSTSLA+YLDKK+LVLLRDGRKL+GILRSFDQFANAVLEG+CERVIVGDL
Sbjct: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGILRSFDQFANAVLEGACERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRK 120
           Y DIPLGLY+IRGENVVL+GEL++EKEELPPHMT VSA EI+RAQKAER+ATDLKGT+RK
Sbjct: 61  YCDIPLGLYIIRGENVVLIGELDLEKEELPPHMTRVSAAEIRRAQKAERDATDLKGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLDLD
Sbjct: 121 RMEFLDLD 128

[Close]
BLAST of Cp4.1LG17g04060 vs. TrEMBL
Match: A5CA52_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g00930 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.9e-56
Identity = 113/128 (88.28%), Postives = 122/128 (95.31%), Query Frame = 1 

Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA  EDIYLSTSLA+YLDKK+LVLLRD RKLLGILRSFDQFANAVLEG+CERVIVGDL
Sbjct: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDNRKLLGILRSFDQFANAVLEGACERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRK 120
           Y DIPLGLYVIRGENVVL+GEL++EKEELPPHMT VSA EIKRAQKAEREA+DLKGT+RK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGELDLEKEELPPHMTRVSAAEIKRAQKAEREASDLKGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLDLD
Sbjct: 121 RMEFLDLD 128

[Close]
BLAST of Cp4.1LG17g04060 vs. TrEMBL
Match: A0A0B0P6G1_GOSAR (U6 snRNA-associated Sm-like protein LSm1 OS=Gossypium arboreum GN=F383_25771 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 3.2e-56
Identity = 110/128 (85.94%), Postives = 122/128 (95.31%), Query Frame = 1 

Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA  EDIYLSTSLA+YLD+K+LVLLRDGRKL+G LRSFDQFANAVLEG+CERVIVGDL
Sbjct: 1   MSWAGPEDIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRK 120
           Y DIPLGLYVIRGENVVL+GEL++E+EELPPHMTHVS  EI+RAQKAEREATDLKGT+RK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGELDLEREELPPHMTHVSVAEIRRAQKAEREATDLKGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLDLD
Sbjct: 121 RMEFLDLD 128

[Close]
BLAST of Cp4.1LG17g04060 vs. TAIR10
Match: AT3G14080.1 (AT3G14080.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 207.2 bits (526), Expect = 5.9e-54
Identity = 101/128 (78.91%), Postives = 116/128 (90.62%), Query Frame = 1 

Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA  E+IYLSTSLA+YLD+K+LVLLRDGRKL+G LRSFDQFANAVLEG+CERVIVG+ 
Sbjct: 1   MSWAGPEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQ 60

Query: 61  YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRK 120
           Y DIPLGLYVIRGENVVL+GEL+ E+EELPPHM  VS  EIKRAQK EREA++L+GT+RK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGELDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLD D
Sbjct: 121 RMEFLDFD 128

[Close]
BLAST of Cp4.1LG17g04060 vs. TAIR10
Match: AT1G19120.1 (AT1G19120.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 197.6 bits (501), Expect = 4.7e-51
Identity = 99/128 (77.34%), Postives = 113/128 (88.28%), Query Frame = 1 

Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA+ +DI+ STSLA YLDKK+LVLLRDGRKL+G+LRSFDQFANAVLE + ERVIVGDL
Sbjct: 1   MSWAAPDDIFFSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRK 120
           Y DIPLGLY+IRGENVVL+GEL++EKEELP HM  V   EIKRAQKAE+E   LKGT+RK
Sbjct: 61  YCDIPLGLYIIRGENVVLIGELDVEKEELPAHMVQVPEAEIKRAQKAEKEEMLLKGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLDLD
Sbjct: 121 RMEFLDLD 128

[Close]
BLAST of Cp4.1LG17g04060 vs. TAIR10
Match: AT3G11500.1 (AT3G11500.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.2e-06
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 1 

Query: 15 LANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGE 74
          L  Y+DKK+ + L   R ++G LR FDQF N V++ + E  + GD  +DI  G+ VIRG 
Sbjct: 10 LKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE--VNGDDKTDI--GMVVIRGN 69

Query: 75 NVVLLGEL 83
          ++V +  L
Sbjct: 70 SIVTVEAL 73

[Close]
BLAST of Cp4.1LG17g04060 vs. TAIR10
Match: AT2G23930.1 (AT2G23930.1 probable small nuclear ribonucleoprotein G)

HSP 1 Score: 47.4 bits (111), Expect = 7.8e-06
Identity = 27/68 (39.71%), Postives = 41/68 (60.29%), Query Frame = 1 

Query: 15 LANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDLYSDIPLGLYVIRGE 74
          L  Y+DKK+ + L   R + G LR FDQF N V++ + E  + G+  +DI  G+ VIRG 
Sbjct: 10 LKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGN 69

Query: 75 NVVLLGEL 83
          ++V +  L
Sbjct: 70 SIVTVEAL 73

[Close]
BLAST of Cp4.1LG17g04060 vs. NCBI nr
Match: gi|449447922|ref|XP_004141715.1| (PREDICTED: sm-like protein LSM1B [Cucumis sativus])

HSP 1 Score: 246.5 bits (628), Expect = 2.5e-62
Identity = 125/128 (97.66%), Postives = 128/128 (100.00%), Query Frame = 1 

Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL
Sbjct: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRK 120
           YSDIPLGLYVIRGENVVLLGEL++EKEELPPHMTHVSA+EIKRAQKAEREATDLKGTIRK
Sbjct: 61  YSDIPLGLYVIRGENVVLLGELDLEKEELPPHMTHVSAVEIKRAQKAEREATDLKGTIRK 120

Query: 121 RLEFLDLD 129
           RLEFLDLD
Sbjct: 121 RLEFLDLD 128

[Close]
BLAST of Cp4.1LG17g04060 vs. NCBI nr
Match: gi|802576362|ref|XP_012068855.1| (PREDICTED: sm-like protein LSM1B [Jatropha curcas])

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-56
Identity = 113/128 (88.28%), Postives = 122/128 (95.31%), Query Frame = 1 

Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA  EDIYLSTSLA+YLDKK+LVLLRDGRKLLGILRSFDQFANAVLEG+CERVIVGDL
Sbjct: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRK 120
           Y DIPLGLYVIRGENVVL+GELN+E+EELP HMT VSA EI+RAQKAEREATDLKGT+RK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGELNLEREELPSHMTRVSAAEIRRAQKAEREATDLKGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLDLD
Sbjct: 121 RMEFLDLD 128

[Close]
BLAST of Cp4.1LG17g04060 vs. NCBI nr
Match: gi|255583960|ref|XP_002532727.1| (PREDICTED: sm-like protein LSM1B [Ricinus communis])

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-56
Identity = 111/128 (86.72%), Postives = 123/128 (96.09%), Query Frame = 1 

Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA  EDIYLSTSLA+YLDKK+LVLLRDGRKL+GILRSFDQFANAVLEG+CERVIVGDL
Sbjct: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDGRKLMGILRSFDQFANAVLEGACERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRK 120
           Y DIPLGLY+IRGENVVL+GEL++EKEELPPHMT VSA EI+RAQKAER+ATDLKGT+RK
Sbjct: 61  YCDIPLGLYIIRGENVVLIGELDLEKEELPPHMTRVSAAEIRRAQKAERDATDLKGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLDLD
Sbjct: 121 RMEFLDLD 128

[Close]
BLAST of Cp4.1LG17g04060 vs. NCBI nr
Match: gi|225442069|ref|XP_002271476.1| (PREDICTED: U6 snRNA-associated Sm-like protein LSm1 [Vitis vinifera])

HSP 1 Score: 226.5 bits (576), Expect = 2.7e-56
Identity = 113/128 (88.28%), Postives = 122/128 (95.31%), Query Frame = 1 

Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA  EDIYLSTSLA+YLDKK+LVLLRD RKLLGILRSFDQFANAVLEG+CERVIVGDL
Sbjct: 1   MSWAGPEDIYLSTSLASYLDKKLLVLLRDNRKLLGILRSFDQFANAVLEGACERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRK 120
           Y DIPLGLYVIRGENVVL+GEL++EKEELPPHMT VSA EIKRAQKAEREA+DLKGT+RK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGELDLEKEELPPHMTRVSAAEIKRAQKAEREASDLKGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLDLD
Sbjct: 121 RMEFLDLD 128

[Close]
BLAST of Cp4.1LG17g04060 vs. NCBI nr
Match: gi|728839513|gb|KHG18956.1| (U6 snRNA-associated Sm-like protein LSm1 [Gossypium arboreum])

HSP 1 Score: 225.7 bits (574), Expect = 4.6e-56
Identity = 110/128 (85.94%), Postives = 122/128 (95.31%), Query Frame = 1 

Query: 1   MSWASAEDIYLSTSLANYLDKKVLVLLRDGRKLLGILRSFDQFANAVLEGSCERVIVGDL 60
           MSWA  EDIYLSTSLA+YLD+K+LVLLRDGRKL+G LRSFDQFANAVLEG+CERVIVGDL
Sbjct: 1   MSWAGPEDIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL 60

Query: 61  YSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAMEIKRAQKAEREATDLKGTIRK 120
           Y DIPLGLYVIRGENVVL+GEL++E+EELPPHMTHVS  EI+RAQKAEREATDLKGT+RK
Sbjct: 61  YCDIPLGLYVIRGENVVLIGELDLEREELPPHMTHVSVAEIRRAQKAEREATDLKGTMRK 120

Query: 121 RLEFLDLD 129
           R+EFLDLD
Sbjct: 121 RMEFLDLD 128

The following BLAST results are available for this feature:
BLAST of Cp4.1LG17g04060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LSM1B_ARATH1.1e-5278.91Sm-like protein LSM1B OS=Arabidopsis thaliana GN=LSM1B PE=1 SV=1[more]
LSM1A_ARATH8.3e-5077.34Sm-like protein LSM1A OS=Arabidopsis thaliana GN=LSM1A PE=1 SV=1[more]
LSM1_SCHPO1.5e-2248.70U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe (strain 97... [more]
LSM1_DICDI7.3e-2245.54Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum GN... [more]
LSM1_BOVIN1.6e-2155.56U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2 SV=1[more]
BLAST of Cp4.1LG17g04060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAS4_CUCSA1.7e-6297.66Uncharacterized protein OS=Cucumis sativus GN=Csa_7G448830 PE=4 SV=1[more]
A0A067KWZ8_JATCU1.4e-5688.28Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24676 PE=4 SV=1[more]
B9T3A8_RICCO1.4e-5686.72Lsm1, putative OS=Ricinus communis GN=RCOM_0392140 PE=4 SV=1[more]
A5CA52_VITVI1.9e-5688.28Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g00930 PE=4 SV=... [more]
A0A0B0P6G1_GOSAR3.2e-5685.94U6 snRNA-associated Sm-like protein LSm1 OS=Gossypium arboreum GN=F383_25771 PE=... [more]
BLAST of Cp4.1LG17g04060 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G14080.15.9e-5478.91 Small nuclear ribonucleoprotein family protein[more]
AT1G19120.14.7e-5177.34 Small nuclear ribonucleoprotein family protein[more]
AT3G11500.11.2e-0641.18 Small nuclear ribonucleoprotein family protein[more]
AT2G23930.17.8e-0639.71 probable small nuclear ribonucleoprotein G[more]
BLAST of Cp4.1LG17g04060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449447922|ref|XP_004141715.1|2.5e-6297.66PREDICTED: sm-like protein LSM1B [Cucumis sativus][more]
gi|802576362|ref|XP_012068855.1|2.0e-5688.28PREDICTED: sm-like protein LSM1B [Jatropha curcas][more]
gi|255583960|ref|XP_002532727.1|2.0e-5686.72PREDICTED: sm-like protein LSM1B [Ricinus communis][more]
gi|225442069|ref|XP_002271476.1|2.7e-5688.28PREDICTED: U6 snRNA-associated Sm-like protein LSm1 [Vitis vinifera][more]
gi|728839513|gb|KHG18956.1|4.6e-5685.94U6 snRNA-associated Sm-like protein LSm1 [Gossypium arboreum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR001163LSM_dom_euk/arc
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016070 RNA metabolic process
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0007020 microtubule nucleation
biological_process GO:0008150 biological_process
cellular_component GO:0000932 cytoplasmic mRNA processing body
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG17g04060.1Cp4.1LG17g04060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 14..80
score: 8.2
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 13..81
score: 4.9
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 13..83
score: 2.25
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 14..87
score: 1.9
NoneNo IPR availablePANTHERPTHR15588LSM1coord: 4..128
score: 1.3
NoneNo IPR availablePANTHERPTHR15588:SF10SUBFAMILY NOT NAMEDcoord: 4..128
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG17g04060Cucsa.360100Cucumber (Gy14) v1cgycpeB0937
Cp4.1LG17g04060CmoCh17G006550Cucurbita moschata (Rifu)cmocpeB339
Cp4.1LG17g04060Cla012534Watermelon (97103) v1cpewmB327
Cp4.1LG17g04060Csa7G448830Cucumber (Chinese Long) v2cpecuB336
Cp4.1LG17g04060MELO3C024338Melon (DHL92) v3.5.1cpemeB292
Cp4.1LG17g04060ClCG09G001110Watermelon (Charleston Gray)cpewcgB284
Cp4.1LG17g04060ClCG07G014510Watermelon (Charleston Gray)cpewcgB305
Cp4.1LG17g04060CSPI07G22370Wild cucumber (PI 183967)cpecpiB337
Cp4.1LG17g04060MELO3C030863.2Melon (DHL92) v3.6.1cpemedB359
Cp4.1LG17g04060MELO3C024338.2Melon (DHL92) v3.6.1cpemedB340
Cp4.1LG17g04060CsaV3_7G034290Cucumber (Chinese Long) v3cpecucB0415
Cp4.1LG17g04060Bhi09G000238Wax gourdcpewgoB0415
Cp4.1LG17g04060Carg13926Silver-seed gourdcarcpeB0851
Cp4.1LG17g04060Carg18971Silver-seed gourdcarcpeB1076
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG17g04060Cp4.1LG03g15060Cucurbita pepo (Zucchini)cpecpeB338
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG17g04060Cucurbita pepo (Zucchini)cpecpeB157
Cp4.1LG17g04060Cucurbita pepo (Zucchini)cpecpeB334
Cp4.1LG17g04060Cucurbita pepo (Zucchini)cpecpeB329
Cp4.1LG17g04060Cucurbita pepo (Zucchini)cpecpeB332
Cp4.1LG17g04060Cucumber (Gy14) v1cgycpeB0400
Cp4.1LG17g04060Cucurbita maxima (Rimu)cmacpeB271
Cp4.1LG17g04060Cucurbita maxima (Rimu)cmacpeB376
Cp4.1LG17g04060Cucurbita maxima (Rimu)cmacpeB916
Cp4.1LG17g04060Cucurbita moschata (Rifu)cmocpeB235
Cp4.1LG17g04060Cucurbita moschata (Rifu)cmocpeB853
Cp4.1LG17g04060Wild cucumber (PI 183967)cpecpiB314
Cp4.1LG17g04060Cucumber (Chinese Long) v2cpecuB312
Cp4.1LG17g04060Bottle gourd (USVL1VR-Ls)cpelsiB257
Cp4.1LG17g04060Bottle gourd (USVL1VR-Ls)cpelsiB275
Cp4.1LG17g04060Watermelon (Charleston Gray)cpewcgB309
Cp4.1LG17g04060Watermelon (97103) v1cpewmB316
Cp4.1LG17g04060Melon (DHL92) v3.5.1cpemeB302
Cp4.1LG17g04060Melon (DHL92) v3.5.1cpemeB307
Cp4.1LG17g04060Cucumber (Gy14) v2cgybcpeB355
Cp4.1LG17g04060Cucumber (Gy14) v2cgybcpeB924
Cp4.1LG17g04060Melon (DHL92) v3.6.1cpemedB353
Cp4.1LG17g04060Silver-seed gourdcarcpeB0137
Cp4.1LG17g04060Cucumber (Chinese Long) v3cpecucB0386
Cp4.1LG17g04060Wax gourdcpewgoB0399
Cp4.1LG17g04060Wax gourdcpewgoB0429