ClCG07G014510 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG07G014510
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	U6 snRNA-associated Sm-like protein LSm1
Location	CG_Chr07 : 30917190 .. 30917948 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTGCTGGTCCTGTGTCTTGATGAACGATGTTTCATTGGCACTTTCTGTTCCTTCGATCATTATGGTATTTCTTTCATTCATTCATTCATTATATATATTCCTATTATGCAAATTCTCATCAGAATTTTTAAAAATTTGTGCAGGGAGTATTGTTCTTGAGAGTGCTTTTGAAAGAACTGTTGTTGAGAATCAGTATTGTGATAACCCCATTGGCCTTTTGGTAGTTCGAGCCGAGAATATTATTTTAATTGGGGAGCTGGTAATCTCATTTTCTTTTTCCTTAATTTAATTTAATTTAATTTAATTAATTAATTTCTAACTCCAAATTCCTTCAATTTCAATTCTTAATTTCAGGACCTCAGCTTGCCCCAACTTCCTCCACATATGACTTCTGTCTCTCTCCCTCAGATTCTAACCGTAAGTAACTATCTACCTCTTCTGACCCTGTGTCAAATCCAACACAGAATCTCCTCCTCTAATACACAAACTTAACCCCGAGTTTGATAGTTTTTTTTTTTTTGTCTATTTTTGGACATGGAGATTCACATGTCTACTTACGAAAGATTTTAAAACCATTCGAAAGAATGAGCTTTGGAAGACAGTTCTGATTGTAACAAAATTTTGAACCTTACATTTGAGCAATTCTAAAAGACTGGCTGGGGATGAATGCAGGCTAGGAAAGCAGAAAGGGAGTCATTAGTGCTTAAAAGAACCTTGAAAAAATGGATGGAGGATCTCCTTGAAGAAGATATGTGA

mRNA sequence

AAATTGCTGGTCCTGTGTCTTGATGAACGATGTTTCATTGGCACTTTCTGTTCCTTCGATCATTATGGGAGTATTGTTCTTGAGAGTGCTTTTGAAAGAACTGTTGTTGAGAATCAGTATTGTGATAACCCCATTGGCCTTTTGGTAGTTCGAGCCGAGAATATTATTTTAATTGGGGAGCTGGACCTCAGCTTGCCCCAACTTCCTCCACATATGACTTCTGTCTCTCTCCCTCAGATTCTAACCGCTAGGAAAGCAGAAAGGGAGTCATTAGTGCTTAAAAGAACCTTGAAAAAATGGATGGAGGATCTCCTTGAAGAAGATATGTGA

Coding sequence (CDS)

AAATTGCTGGTCCTGTGTCTTGATGAACGATGTTTCATTGGCACTTTCTGTTCCTTCGATCATTATGGGAGTATTGTTCTTGAGAGTGCTTTTGAAAGAACTGTTGTTGAGAATCAGTATTGTGATAACCCCATTGGCCTTTTGGTAGTTCGAGCCGAGAATATTATTTTAATTGGGGAGCTGGACCTCAGCTTGCCCCAACTTCCTCCACATATGACTTCTGTCTCTCTCCCTCAGATTCTAACCGCTAGGAAAGCAGAAAGGGAGTCATTAGTGCTTAAAAGAACCTTGAAAAAATGGATGGAGGATCTCCTTGAAGAAGATATGTGA

Protein sequence

KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGELDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDLLEEDM

Homology

[Close]

BLAST of ClCG07G014510 vs. Swiss-Prot
Match: LSM1B_ARATH (Sm-like protein LSM1B OS=Arabidopsis thaliana GN=LSM1B PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.1e-22
Identity = 55/104 (52.88%), Postives = 68/104 (65.38%), Query Frame = 1


Query: 1   KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGE 60
           KLLVL  D R  +GT  SFD + + VLE A ER +V  QYCD P+GL V+R EN++LIGE
Sbjct: 22  KLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGENVVLIGE 81

Query: 61  LDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 105
           LD    +LPPHM  VS  +I  A+K ERE+  L+ T++K ME L
Sbjct: 82  LDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRKRMEFL 125

[Close]

BLAST of ClCG07G014510 vs. Swiss-Prot
Match: LSM1A_ARATH (Sm-like protein LSM1A OS=Arabidopsis thaliana GN=LSM1A PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-21
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 1


Query: 1   KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGE 60
           KLLVL  D R  +G   SFD + + VLE A+ER +V + YCD P+GL ++R EN++LIGE
Sbjct: 22  KLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGENVVLIGE 81

Query: 61  LDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 105
           LD+   +LP HM  V   +I  A+KAE+E ++LK T++K ME L
Sbjct: 82  LDVEKEELPAHMVQVPEAEIKRAQKAEKEEMLLKGTMRKRMEFL 125

[Close]

BLAST of ClCG07G014510 vs. Swiss-Prot
Match: LSM1_BOVIN (U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-09
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 1


Query: 1   KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGE 60
           K LVL  D R  IG   S D + ++VL    ER  V  +Y D P G+ VVR EN++L+GE
Sbjct: 17  KHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGE 76

Query: 61  LDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLK 99
           +DL      P +  VS+ +IL  ++ E+++ +    LK
Sbjct: 77  IDLEKESDTP-LQQVSIEEILEEQRVEQQTKLEAEKLK 113

[Close]

BLAST of ClCG07G014510 vs. Swiss-Prot
Match: LSM1_HUMAN (U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-09
Identity = 37/98 (37.76%), Postives = 53/98 (54.08%), Query Frame = 1


Query: 1   KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGE 60
           K LVL  D R  IG   S D + ++VL    ER  V  +Y D P G+ VVR EN++L+GE
Sbjct: 17  KHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGE 76

Query: 61  LDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLK 99
           +DL      P +  VS+ +IL  ++ E+++ +    LK
Sbjct: 77  IDLEKESDTP-LQQVSIEEILEEQRVEQQTKLEAEKLK 113

[Close]

BLAST of ClCG07G014510 vs. Swiss-Prot
Match: LSM1_MOUSE (U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-09
Identity = 36/98 (36.73%), Postives = 53/98 (54.08%), Query Frame = 1


Query: 1   KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGE 60
           K LVL  D R  IG   S D + ++VL    ER  V  +Y D P G+ VVR EN++L+GE
Sbjct: 17  KHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGE 76

Query: 61  LDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLK 99
           +DL      P +  VS+ +IL  ++ ++++ +    LK
Sbjct: 77  IDLEKESDTP-LQQVSIEEILEEQRVQQQTRLEAEKLK 113

[Close]

BLAST of ClCG07G014510 vs. TrEMBL
Match: A0A022Q0J9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016277mg PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 5.2e-23
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = 1


Query: 1   KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGE 60
           KLLVL  D R  +G   SFD + + VLE A ER +V   YCD P+GL V+R EN++LIGE
Sbjct: 22  KLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGELYCDIPLGLYVIRGENVVLIGE 81

Query: 61  LDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDLLEED 109
           LDL   +LPPHMT VS  +I  A+KAERE+  LK T+KKWM D L+ D
Sbjct: 82  LDLEKDELPPHMTRVSAEEIKRAQKAEREASELKGTMKKWM-DFLDMD 128

[Close]

BLAST of ClCG07G014510 vs. TrEMBL
Match: A0A067FNE1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0321082mg PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-22
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 1


Query: 1   KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGE 60
           KLLVL  D R  +GT CSFD + + VLE A ER +V + YCD P+GL V+R EN++LIGE
Sbjct: 1   KLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGE 60

Query: 61  LDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 105
           LDL   +LPPH+T VS+ +I  A+KAERE+  LK +++K ME L
Sbjct: 61  LDLERDELPPHLTHVSVAEIKRAQKAEREASDLKGSMRKRMEFL 104

[Close]

BLAST of ClCG07G014510 vs. TrEMBL
Match: V4SS25_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026767mg PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-22
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 1


Query: 1   KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGE 60
           KLLVL  D R  +GT CSFD + + VLE A ER +V + YCD P+GL V+R EN++LIGE
Sbjct: 22  KLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGE 81

Query: 61  LDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 105
           LDL   +LPPH+T VS+ +I  A+KAERE+  LK +++K ME L
Sbjct: 82  LDLERDELPPHLTHVSVAEIKRAQKAEREASDLKGSMRKRMEFL 125

[Close]

BLAST of ClCG07G014510 vs. TrEMBL
Match: A0A0D2TQ67_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G145700 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.3e-22
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1


Query: 1   KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGE 60
           KLLVL  D R  +GT  SFD + + VLE A ER +V + YCD P+GL V+R EN++LIGE
Sbjct: 22  KLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGE 81

Query: 61  LDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 105
           LDL   +LPPHMT VS+ +I  A+KAERE+  LK T++K ME L
Sbjct: 82  LDLEREELPPHMTHVSVAEIRRAQKAEREATDLKGTMRKRMEFL 125

[Close]

BLAST of ClCG07G014510 vs. TrEMBL
Match: A0A0B0P6G1_GOSAR (U6 snRNA-associated Sm-like protein LSm1 OS=Gossypium arboreum GN=F383_25771 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.3e-22
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1


Query: 1   KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGE 60
           KLLVL  D R  +GT  SFD + + VLE A ER +V + YCD P+GL V+R EN++LIGE
Sbjct: 22  KLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGE 81

Query: 61  LDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 105
           LDL   +LPPHMT VS+ +I  A+KAERE+  LK T++K ME L
Sbjct: 82  LDLEREELPPHMTHVSVAEIRRAQKAEREATDLKGTMRKRMEFL 125

[Close]

BLAST of ClCG07G014510 vs. TAIR10
Match: AT3G14080.1 (AT3G14080.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-23
Identity = 55/104 (52.88%), Postives = 68/104 (65.38%), Query Frame = 1


Query: 1   KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGE 60
           KLLVL  D R  +GT  SFD + + VLE A ER +V  QYCD P+GL V+R EN++LIGE
Sbjct: 22  KLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGENVVLIGE 81

Query: 61  LDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 105
           LD    +LPPHM  VS  +I  A+K ERE+  L+ T++K ME L
Sbjct: 82  LDTEREELPPHMIRVSEAEIKRAQKVEREASELRGTMRKRMEFL 125

[Close]

BLAST of ClCG07G014510 vs. TAIR10
Match: AT1G19120.1 (AT1G19120.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 103.6 bits (257), Expect = 7.9e-23
Identity = 51/104 (49.04%), Postives = 69/104 (66.35%), Query Frame = 1


Query: 1   KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGE 60
           KLLVL  D R  +G   SFD + + VLE A+ER +V + YCD P+GL ++R EN++LIGE
Sbjct: 22  KLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGENVVLIGE 81

Query: 61  LDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 105
           LD+   +LP HM  V   +I  A+KAE+E ++LK T++K ME L
Sbjct: 82  LDVEKEELPAHMVQVPEAEIKRAQKAEKEEMLLKGTMRKRMEFL 125

[Close]

BLAST of ClCG07G014510 vs. NCBI nr
Match: gi|659120707|ref|XP_008460317.1| (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm1 [Cucumis melo])

HSP 1 Score: 118.6 bits (296), Expect = 6.7e-24
Identity = 61/92 (66.30%), Postives = 70/92 (76.09%), Query Frame = 1


Query: 1   KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIG-LLVVRAENIILIG 60
           KLLVL LD R   G   SFDH+G++VLE+ FER VV N YCDNP+G LLV+RAENIILIG
Sbjct: 31  KLLVLLLDGRSIFGILRSFDHFGNLVLETVFERIVVGNHYCDNPMGGLLVLRAENIILIG 90

Query: 61  ELDLSLPQLPPHMTSVSLPQILTARKAERESL 92
           ELD  LPQLPPH+TS+ LPQILT  K    +L
Sbjct: 91  ELDPCLPQLPPHITSLPLPQILTVSKLSNSTL 122

[Close]

BLAST of ClCG07G014510 vs. NCBI nr
Match: gi|848919213|ref|XP_012856715.1| (PREDICTED: sm-like protein LSM1B [Erythranthe guttata])

HSP 1 Score: 115.2 bits (287), Expect = 7.4e-23
Identity = 60/108 (55.56%), Postives = 74/108 (68.52%), Query Frame = 1


Query: 1   KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGE 60
           KLLVL  D R  +G   SFD + + VLE A ER +V   YCD P+GL V+R EN++LIGE
Sbjct: 22  KLLVLLRDGRKLLGILRSFDQFANAVLEGACERVIVGELYCDIPLGLYVIRGENVVLIGE 81

Query: 61  LDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDLLEED 109
           LDL   +LPPHMT VS  +I  A+KAERE+  LK T+KKWM D L+ D
Sbjct: 82  LDLEKDELPPHMTRVSAEEIKRAQKAEREASELKGTMKKWM-DFLDMD 128

[Close]

BLAST of ClCG07G014510 vs. NCBI nr
Match: gi|641846078|gb|KDO64962.1| (hypothetical protein CISIN_1g0321082mg, partial [Citrus sinensis])

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-22
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 1


Query: 1   KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGE 60
           KLLVL  D R  +GT CSFD + + VLE A ER +V + YCD P+GL V+R EN++LIGE
Sbjct: 1   KLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGE 60

Query: 61  LDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 105
           LDL   +LPPH+T VS+ +I  A+KAERE+  LK +++K ME L
Sbjct: 61  LDLERDELPPHLTHVSVAEIKRAQKAEREASDLKGSMRKRMEFL 104

[Close]

BLAST of ClCG07G014510 vs. NCBI nr
Match: gi|567868157|ref|XP_006426701.1| (hypothetical protein CICLE_v10026767mg [Citrus clementina])

HSP 1 Score: 114.0 bits (284), Expect = 1.6e-22
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 1


Query: 1   KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGE 60
           KLLVL  D R  +GT CSFD + + VLE A ER +V + YCD P+GL V+R EN++LIGE
Sbjct: 22  KLLVLLRDGRKLMGTLCSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGE 81

Query: 61  LDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 105
           LDL   +LPPH+T VS+ +I  A+KAERE+  LK +++K ME L
Sbjct: 82  LDLERDELPPHLTHVSVAEIKRAQKAEREASDLKGSMRKRMEFL 125

[Close]

BLAST of ClCG07G014510 vs. NCBI nr
Match: gi|823223323|ref|XP_012444399.1| (PREDICTED: sm-like protein LSM1B [Gossypium raimondii])

HSP 1 Score: 112.5 bits (280), Expect = 4.8e-22
Identity = 58/104 (55.77%), Postives = 74/104 (71.15%), Query Frame = 1


Query: 1   KLLVLCLDERCFIGTFCSFDHYGSIVLESAFERTVVENQYCDNPIGLLVVRAENIILIGE 60
           KLLVL  D R  +GT  SFD + + VLE A ER +V + YCD P+GL V+R EN++LIGE
Sbjct: 22  KLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGE 81

Query: 61  LDLSLPQLPPHMTSVSLPQILTARKAERESLVLKRTLKKWMEDL 105
           LDL   +LPPHMT VS+ +I  A+KAERE+  LK T++K ME L
Sbjct: 82  LDLEREELPPHMTHVSVAEIRRAQKAEREATDLKGTMRKRMEFL 125

The following BLAST results are available for this feature:

BLAST of ClCG07G014510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSM1B_ARATH	2.1e-22	52.88	Sm-like protein LSM1B OS=Arabidopsis thaliana GN=LSM1B PE=1 SV=1	[more]
LSM1A_ARATH	1.4e-21	49.04	Sm-like protein LSM1A OS=Arabidopsis thaliana GN=LSM1A PE=1 SV=1	[more]
LSM1_BOVIN	1.2e-09	37.76	U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2 SV=1	[more]
LSM1_HUMAN	1.2e-09	37.76	U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1 PE=1 SV=1	[more]
LSM1_MOUSE	2.7e-09	36.73	U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1 PE=1 SV=1	[more]

BLAST of ClCG07G014510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A022Q0J9_ERYGU	5.2e-23	55.56	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016277mg PE=4 SV=1	[more]
A0A067FNE1_CITSI	1.1e-22	54.81	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0321082mg PE=4 ...	[more]
V4SS25_9ROSI	1.1e-22	54.81	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026767mg PE=4 SV=1	[more]
A0A0D2TQ67_GOSRA	3.3e-22	55.77	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G145700 PE=4 SV=1	[more]
A0A0B0P6G1_GOSAR	3.3e-22	55.77	U6 snRNA-associated Sm-like protein LSm1 OS=Gossypium arboreum GN=F383_25771 PE=...	[more]

BLAST of ClCG07G014510 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G14080.1	1.2e-23	52.88	Small nuclear ribonucleoprotein family protein	[more]
AT1G19120.1	7.9e-23	49.04	Small nuclear ribonucleoprotein family protein	[more]

BLAST of ClCG07G014510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120707\|ref\|XP_008460317.1\|	6.7e-24	66.30	PREDICTED: probable U6 snRNA-associated Sm-like protein LSm1 [Cucumis melo]	[more]
gi\|848919213\|ref\|XP_012856715.1\|	7.4e-23	55.56	PREDICTED: sm-like protein LSM1B [Erythranthe guttata]	[more]
gi\|641846078\|gb\|KDO64962.1\|	1.6e-22	54.81	hypothetical protein CISIN_1g0321082mg, partial [Citrus sinensis]	[more]
gi\|567868157\|ref\|XP_006426701.1\|	1.6e-22	54.81	hypothetical protein CICLE_v10026767mg [Citrus clementina]	[more]
gi\|823223323\|ref\|XP_012444399.1\|	4.8e-22	55.77	PREDICTED: sm-like protein LSM1B [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0016070	RNA metabolic process
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0007020	microtubule nucleation
biological_process	GO:0000290	deadenylation-dependent decapping of nuclear-transcribed mRNA
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000932	cytoplasmic mRNA processing body
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0000339	RNA cap binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG07G014510.1	ClCG07G014510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 2..59 score: 5.
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 2..62 score: 5.79
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 1..63 score: 2.1
None	No IPR available	PANTHER	PTHR15588	LSM1	coord: 1..102 score: 3.1
None	No IPR available	PANTHER	PTHR15588:SF10	SUBFAMILY NOT NAMED	coord: 1..102 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG07G014510	Csa7G448830	Cucumber (Chinese Long) v2	cuwcgB563
ClCG07G014510	MELO3C024338	Melon (DHL92) v3.5.1	mewcgB219
ClCG07G014510	Cla012534	Watermelon (97103) v1	wcgwmB371
ClCG07G014510	Cla97C07G141370	Watermelon (97103) v2	wcgwmbB307
ClCG07G014510	Cla97C09G163170	Watermelon (97103) v2	wcgwmbB311
ClCG07G014510	Bhi09G000238	Wax gourd	wcgwgoB598
ClCG07G014510	CSPI07G22370	Wild cucumber (PI 183967)	cpiwcgB595
ClCG07G014510	Cucsa.360100	Cucumber (Gy14) v1	cgywcgB614
ClCG07G014510	CmaCh17G006750	Cucurbita maxima (Rimu)	cmawcgB330
ClCG07G014510	CmoCh08G007810	Cucurbita moschata (Rifu)	cmowcgB807
ClCG07G014510	CmoCh17G006550	Cucurbita moschata (Rifu)	cmowcgB327
ClCG07G014510	Lsi02G028850	Bottle gourd (USVL1VR-Ls)	lsiwcgB205
ClCG07G014510	Lsi07G006630	Bottle gourd (USVL1VR-Ls)	lsiwcgB406
ClCG07G014510	Cp4.1LG03g15060	Cucurbita pepo (Zucchini)	cpewcgB571
ClCG07G014510	Cp4.1LG17g04060	Cucurbita pepo (Zucchini)	cpewcgB305
ClCG07G014510	CsGy7G020670	Cucumber (Gy14) v2	cgybwcgB524
ClCG07G014510	MELO3C030863.2	Melon (DHL92) v3.6.1	medwcgB343
ClCG07G014510	MELO3C024338.2	Melon (DHL92) v3.6.1	medwcgB211
ClCG07G014510	Carg18971	Silver-seed gourd	carwcgB0743
ClCG07G014510	Carg13926	Silver-seed gourd	carwcgB0587
ClCG07G014510	CsaV3_7G034290	Cucumber (Chinese Long) v3	cucwcgB594

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
ClCG07G014510	ClCG09G001110	Watermelon (Charleston Gray)	wcgwcgB035

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG07G014510	Cucumber (Gy14) v1	cgywcgB253
ClCG07G014510	Cucurbita maxima (Rimu)	cmawcgB242
ClCG07G014510	Cucurbita maxima (Rimu)	cmawcgB428
ClCG07G014510	Cucurbita maxima (Rimu)	cmawcgB812
ClCG07G014510	Cucurbita moschata (Rifu)	cmowcgB230
ClCG07G014510	Cucurbita moschata (Rifu)	cmowcgB427
ClCG07G014510	Wild cucumber (PI 183967)	cpiwcgB262
ClCG07G014510	Cucumber (Chinese Long) v2	cuwcgB253
ClCG07G014510	Melon (DHL92) v3.5.1	mewcgB347
ClCG07G014510	Watermelon (97103) v1	wcgwmB356
ClCG07G014510	Cucurbita pepo (Zucchini)	cpewcgB146
ClCG07G014510	Cucurbita pepo (Zucchini)	cpewcgB524
ClCG07G014510	Cucumber (Gy14) v2	cgybwcgB235
ClCG07G014510	Silver-seed gourd	carwcgB0199
ClCG07G014510	Silver-seed gourd	carwcgB0452
ClCG07G014510	Cucumber (Chinese Long) v3	cucwcgB261
ClCG07G014510	Wax gourd	wcgwgoB561
ClCG07G014510	Wax gourd	wcgwgoB579