Carg13926 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGATCGTTTCGTTCTATAGAGAAGGTTCTTGTACTACTTCGAGATGGTCGAAAGCTATTAGGAATTCTCCGGTCATTCGATCAATTTGGTATAGTTCTTCCTGAAATTTTATACAGTTTTAACATTCGCGTGGAGAACTAATTGTTTCTATGTTTCAGCAAATGCTGTTCTTGAAGGATCCTGTGAAAGAGTGATTGTTGGTGATCTTTACAGCGATATTCCTTTAGGTCTCTATGTAATTCGAGGCGAAAACGTCGTTTTACTGGGCGAGCTGGTAGGACAAAATCTTAGAGATTCACTTGTTTGTCTTCGTTATTTGTCTGTTAGCTGTCCAACCCTCTTAAAATTTTTGTTTTGGGCTTTATAGAACATGGAGAAAGAGGAGCTCCCTCCACACATGACTCATGTCTCTGCTGTGGAGATTAAAAGGGTAAGTGATGTTGACTCGTCCATTGGATTTCTTAAA ATGATCGTTTCGTTCTATAGAGAAGTTTTAACATTCGCGTGGAGAACTAATTGTTTCTATGTTTCAGCAAATGCTGTTCTTGAAGGATCCTGTGAAAGAGTGATTGTTGGTGATCTTTACAGCGATATTCCTTTAGGTCTCTATGTAATTCGAGGCGAAAACGTCGTTTTACTGGGCGAGCTGAACATGGAGAAAGAGGAGCTCCCTCCACACATGACTCATGTCTCTGCTGTGGAGATTAAAAGGGTAAGTGATGTTGACTCGTCCATTGGATTTCTTAAA ATGATCGTTTCGTTCTATAGAGAAGTTTTAACATTCGCGTGGAGAACTAATTGTTTCTATGTTTCAGCAAATGCTGTTCTTGAAGGATCCTGTGAAAGAGTGATTGTTGGTGATCTTTACAGCGATATTCCTTTAGGTCTCTATGTAATTCGAGGCGAAAACGTCGTTTTACTGGGCGAGCTGAACATGGAGAAAGAGGAGCTCCCTCCACACATGACTCATGTCTCTGCTGTGGAGATTAAAAGGGTAAGTGATGTTGACTCGTCCATTGGATTTCTTAAA MIVSFYREVLTFAWRTNCFYVSANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
BLAST of Carg13926 vs. NCBI nr
Match: XP_022964148.1 (sm-like protein LSM1B [Cucurbita moschata] >XP_022964149.1 sm-like protein LSM1B [Cucurbita moschata] >XP_022999982.1 sm-like protein LSM1B [Cucurbita maxima]) HSP 1 Score: 124.4 bits (311), Expect = 2.0e-25 Identity = 62/72 (86.11%), Postives = 63/72 (87.50%), Query Frame = 0
BLAST of Carg13926 vs. NCBI nr
Match: XP_023515193.1 (sm-like protein LSM1B isoform X1 [Cucurbita pepo subsp. pepo] >XP_023515194.1 sm-like protein LSM1B isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 123.2 bits (308), Expect = 4.6e-25 Identity = 61/72 (84.72%), Postives = 63/72 (87.50%), Query Frame = 0
BLAST of Carg13926 vs. NCBI nr
Match: XP_022154301.1 (sm-like protein LSM1B [Momordica charantia]) HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24 Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0
BLAST of Carg13926 vs. NCBI nr
Match: XP_004141715.1 (PREDICTED: sm-like protein LSM1B [Cucumis sativus] >XP_008462280.1 PREDICTED: sm-like protein LSM1B [Cucumis melo] >XP_022954404.1 sm-like protein LSM1B [Cucurbita moschata] >XP_022954405.1 sm-like protein LSM1B [Cucurbita moschata] >XP_022992441.1 sm-like protein LSM1B [Cucurbita maxima] >XP_022992442.1 sm-like protein LSM1B [Cucurbita maxima] >XP_023547534.1 sm-like protein LSM1B [Cucurbita pepo subsp. pepo] >XP_023547535.1 sm-like protein LSM1B [Cucurbita pepo subsp. pepo] >KGN45472.1 hypothetical protein Csa_7G448830 [Cucumis sativus]) HSP 1 Score: 121.3 bits (303), Expect = 1.7e-24 Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0
BLAST of Carg13926 vs. NCBI nr
Match: KDO64964.1 (hypothetical protein CISIN_1g0321082mg, partial [Citrus sinensis]) HSP 1 Score: 115.2 bits (287), Expect = 1.2e-22 Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 0
BLAST of Carg13926 vs. TAIR10
Match: AT3G14080.1 (Small nuclear ribonucleoprotein family protein) HSP 1 Score: 103.6 bits (257), Expect = 6.8e-23 Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 0
BLAST of Carg13926 vs. TAIR10
Match: AT1G19120.1 (Small nuclear ribonucleoprotein family protein) HSP 1 Score: 96.3 bits (238), Expect = 1.1e-20 Identity = 48/72 (66.67%), Postives = 54/72 (75.00%), Query Frame = 0
BLAST of Carg13926 vs. Swiss-Prot
Match: sp|Q8LFL8|LSM1B_ARATH (Sm-like protein LSM1B OS=Arabidopsis thaliana OX=3702 GN=LSM1B PE=1 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 1.2e-21 Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 0
BLAST of Carg13926 vs. Swiss-Prot
Match: sp|Q945P8|LSM1A_ARATH (Sm-like protein LSM1A OS=Arabidopsis thaliana OX=3702 GN=LSM1A PE=1 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 1.9e-19 Identity = 48/72 (66.67%), Postives = 54/72 (75.00%), Query Frame = 0
BLAST of Carg13926 vs. Swiss-Prot
Match: sp|Q8VC85|LSM1_MOUSE (U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus OX=10090 GN=Lsm1 PE=1 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 4.1e-09 Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0
BLAST of Carg13926 vs. Swiss-Prot
Match: sp|Q5E9Z8|LSM1_BOVIN (U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus OX=9913 GN=LSM1 PE=2 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 9.1e-09 Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 0
BLAST of Carg13926 vs. Swiss-Prot
Match: sp|O15116|LSM1_HUMAN (U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens OX=9606 GN=LSM1 PE=1 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 9.1e-09 Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 0
BLAST of Carg13926 vs. TrEMBL
Match: tr|A0A1S3CGJ0|A0A1S3CGJ0_CUCME (sm-like protein LSM1B OS=Cucumis melo OX=3656 GN=LOC103500677 PE=4 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 1.1e-24 Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0
BLAST of Carg13926 vs. TrEMBL
Match: tr|A0A0A0KAS4|A0A0A0KAS4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G448830 PE=4 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 1.1e-24 Identity = 60/72 (83.33%), Postives = 63/72 (87.50%), Query Frame = 0
BLAST of Carg13926 vs. TrEMBL
Match: tr|A0A0D2QGC5|A0A0D2QGC5_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_009G145700 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 8.2e-23 Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 0
BLAST of Carg13926 vs. TrEMBL
Match: tr|A0A067FC20|A0A067FC20_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0321082mg PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 8.2e-23 Identity = 55/71 (77.46%), Postives = 64/71 (90.14%), Query Frame = 0
BLAST of Carg13926 vs. TrEMBL
Match: tr|A0A251U0R4|A0A251U0R4_HELAN (Putative U6 snRNA-associated Sm-like protein LSm1 OS=Helianthus annuus OX=4232 GN=LSM1 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 1.4e-22 Identity = 57/72 (79.17%), Postives = 59/72 (81.94%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene: |